MELO3C021565 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C021565
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Putative ATP-dependent DNA helicase HFM1
Location	chr9 : 3819058 .. 3820299 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAATCAAATCATTTGAGGCACTTGCTGAAGCTGATCCAAGGAAAATAGAGATAGTCACTGGCAGAAAATACCCATTTGGGAATCATATCAAGGAGTCATTATCATCTTTACCACCGAAAGTGGACCTGAAGCTTGAGGAAGCTGAATGCCCTAAGCAAGGGAAGGCCAAGCTCATAGTAACATTAACTAGAATGCCCCAGTCTTACCGACCAAATAAACGACATTATGCTGAAATGGTATGTTGACTTTAAATATCATTTCTATTTTTCAACCAGAACTGAAGAGAACTCTATCTCGCAGATTGTTGGCTCAGAAGAAGATAACCAGATCCTCTTTCATGAGAAAATAAGGTGATTATATTTGAAACTTTGACGTATAAATTTCAGCAAGAGACTAAGCCTGTATTTTATCAAGAAAAGGTACAAAGGTTAAGGTTTAGATATTTATAAGTTTAAATGCTTTTTGGGTAAGAATGCTTTAAACTTCTCGTGTGAATTTCGCTTGTTCCAAATGTAGCCTACTTAGTTTAACTCTATTTGTTTGGTGCTGCAGAGTAGATGAATTCTCCAGGTACTCAAGCCTTATCCTTCTGTAGCTCATTAACCAACAAAATTTTCTTAAACGCCATATTAGTTATCATTTCGATTATGGGTAAGTAAACATTATGGTCTTATTTCGGAGAGTTGTTATTTCTTTCCAATTCCATGACGTTTTTGAGGGAGTAAACATTTTAACCATTTTGACAAAATTTTTTTTGTGGAAAAGTCAACTTATGTTGCCTATCGATAATTTGACGAAAAAATAGTAATTATCGTATCAGTATAACATTTTAATGCTACTATGTTGCTCTTTCTGCAGCCCATACAGCACAGTTGTTCTTCTCTCACATCCTCAACAAGGAAAGTTGACTATCAAAGCTGATCTTATTTTTGATGAATACAGTAAGAATCAACACTGTTCCGGAAGTTCTGCAAACCCACTTGGATTATCAAATACTCTAGCGCCCCTATATACATTTTTAAGTGTTTCTTCGTACAGTTGGCATTGATCTCCACCGAAAACTGCAACTAATGGAACAAAATTTAAACGTGAGAAACAAATGGGGAAGAATGCCACCATCCTCCCATCCACCTGAGGAAGTATATGTCATTGATGACGACGGTGAACCTCTACCACAAGCTGCAACGAATGAGTTGCCCATTTCTGGCGACTTGAACCCATTACTTGACTCCATGTGA

mRNA sequence

ATGGGAATCAAATCATTTGAGGCACTTGCTGAAGCTGATCCAAGGAAAATAGAGATAGTCACTGGCAGAAAATACCCATTTGGGAATCATATCAAGGAGTCATTATCATCTTTACCACCGAAAGTGGACCTGAAGCTTGAGGAAGCTGAATGCCCTAAGCAAGGGAAGGCCAAGCTCATAGTAACATTAACTAGAATGCCCCAGTCTTACCGACCAAATAAACGACATTATGCTGAAATGCTCATTAACCAACAAAATTTTCTTAAACGCCATATTAGTTATCATTTCGATTATGGCCCATACAGCACAGTTGTTCTTCTCTCACATCCTCAACAAGGAAAGTTGACTATCAAAGCTGATCTTATTTTTGATGAATACATTGGCATTGATCTCCACCGAAAACTGCAACTAATGGAACAAAATTTAAACGTGAGAAACAAATGGGGAAGAATGCCACCATCCTCCCATCCACCTGAGGAAGTATATGTCATTGATGACGACGGTGAACCTCTACCACAAGCTGCAACGAATGAGTTGCCCATTTCTGGCGACTTGAACCCATTACTTGACTCCATGTGA

Coding sequence (CDS)

ATGGGAATCAAATCATTTGAGGCACTTGCTGAAGCTGATCCAAGGAAAATAGAGATAGTCACTGGCAGAAAATACCCATTTGGGAATCATATCAAGGAGTCATTATCATCTTTACCACCGAAAGTGGACCTGAAGCTTGAGGAAGCTGAATGCCCTAAGCAAGGGAAGGCCAAGCTCATAGTAACATTAACTAGAATGCCCCAGTCTTACCGACCAAATAAACGACATTATGCTGAAATGCTCATTAACCAACAAAATTTTCTTAAACGCCATATTAGTTATCATTTCGATTATGGCCCATACAGCACAGTTGTTCTTCTCTCACATCCTCAACAAGGAAAGTTGACTATCAAAGCTGATCTTATTTTTGATGAATACATTGGCATTGATCTCCACCGAAAACTGCAACTAATGGAACAAAATTTAAACGTGAGAAACAAATGGGGAAGAATGCCACCATCCTCCCATCCACCTGAGGAAGTATATGTCATTGATGACGACGGTGAACCTCTACCACAAGCTGCAACGAATGAGTTGCCCATTTCTGGCGACTTGAACCCATTACTTGACTCCATGTGA

Protein sequence

MGIKSFEALAEADPRKIEIVTGRKYPFGNHIKESLSSLPPKVDLKLEEAECPKQGKAKLIVTLTRMPQSYRPNKRHYAEMLINQQNFLKRHISYHFDYGPYSTVVLLSHPQQGKLTIKADLIFDEYIGIDLHRKLQLMEQNLNVRNKWGRMPPSSHPPEEVYVIDDDGEPLPQAATNELPISGDLNPLLDSM*

Homology

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BLAST of MELO3C021565 vs. Swiss-Prot
Match: MER3_ARATH (DExH-box ATP-dependent RNA helicase DExH17 OS=Arabidopsis thaliana GN=MER3 PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.6e-44
Identity = 99/191 (51.83%), Postives = 124/191 (64.92%), Query Frame = 1


Query: 1   MGIKSFEALAEADPRKIEIVTGRKYPFGNHIKESLSSLPPKVDLKLEEAECPKQGKAKLI 60
           MG++SFEALAEADPR+IEIVTGRKYPFGN IKESLSSLPPKV++K+EE +C KQG +KL 
Sbjct: 711 MGVRSFEALAEADPRRIEIVTGRKYPFGNTIKESLSSLPPKVEIKVEEVDCQKQGISKLA 770

Query: 61  VTLTRMPQSYRPNKRHYAEMLI--NQQNFLKRHISYHFD--YGPYSTVVLLSHP-QQGKL 120
           VTL+R+ Q  +  KRHYA++++   ++N +  H     +    PYS  VLL  P QQ K+
Sbjct: 771 VTLSRVSQPLQSTKRHYADLIVGSEEENLIHFHEKIRMEDFSSPYSVTVLLERPHQQTKV 830

Query: 121 TIKADLIFDEYIGIDLHRKLQLMEQNLN-VRNKWGRMPPSSHPPEEVYVIDDDGEPLPQA 180
           T+KADLIF+EYIGIDLH  L L + N N V  K     P  +PP     I DD  P+   
Sbjct: 831 TVKADLIFEEYIGIDLHETLLLKKANNNKVNYKSENRMPQYYPPMASACIADDDNPVTSG 890

Query: 181 ATNELPISGDL 186
            +N      D+
Sbjct: 891 PSNRKDKKDDM 901

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BLAST of MELO3C021565 vs. Swiss-Prot
Match: MER3_ORYSJ (ATP-dependent DNA helicase MER3 homolog OS=Oryza sativa subsp. japonica GN=MER3 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 5.1e-27
Identity = 72/194 (37.11%), Postives = 111/194 (57.22%), Query Frame = 1


Query: 2   GIKSFEALAEADPRKIEIVTGRKYPFGNHIKESLSSLPPKVDLKLEEAECPKQGKAKLIV 61
           GI SFE+LA AD RKIE VTGR YPFG+ IK  L SL PK+D+ +E+A   +QGK+ +IV
Sbjct: 719 GIDSFESLATADARKIESVTGRNYPFGDSIKSYLPSLGPKIDINIEDAG-NRQGKSTIIV 778

Query: 62  TLTRMPQSYRPNKRHYAEMLINQQN-----FLKRHISYHFDYGPYSTVVLLSHPQQGKLT 121
           TLTR+ Q+   +K++YA+M++  +      F ++  +  F   PYS  + +  P   + T
Sbjct: 779 TLTRLSQAVGSSKQNYADMVVGSEEDNAILFHEKIKTQEFS-SPYSVKLYVPCPPNARAT 838

Query: 122 IKADLIFDEYIGIDLHRKLQLMEQNLNVRNKWG--RMPPSSHPPEEVYVIDDDGEPLPQA 181
           +K D+IF+EY+G+D+H+K  +  ++ +V   +G  +  P  + P E  ++          
Sbjct: 839 LKVDVIFEEYVGLDIHKKHVVSREDFHVTKVFGIKKAEPLYNLPAESCLVSS-----KTT 898

Query: 182 ATNELPISGDLNPL 189
            TN+       NPL
Sbjct: 899 RTNQSKYHNGQNPL 905

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BLAST of MELO3C021565 vs. Swiss-Prot
Match: HFM1_MOUSE (Probable ATP-dependent DNA helicase HFM1 OS=Mus musculus GN=Hfm1 PE=3 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 9.1e-08
Identity = 42/147 (28.57%), Postives = 73/147 (49.66%), Query Frame = 1


Query: 2    GIKSFEALAEADPRKIEIVTGRKYPFGNHIKESLSSLPPKVDLKLEEAECPKQGKAKLIV 61
            G+ SF+ + EA+ R++E++  R  PFG  IKE+++ L PK +L++E+       KA+++V
Sbjct: 947  GLTSFKKIEEANARELELILNRHPPFGTQIKEAVAHL-PKYELEVEQIARYSDIKAEILV 1006

Query: 62   TLTRMPQSYRPNKR-----HYAEMLINQQNFLKRHISYHFDYGPYSTVVLLSHPQQGKLT 121
            T+          KR     HYA ++I   +         F +    +V+L S     K+ 
Sbjct: 1007 TIILRNFEQLQTKRTAPDFHYATLIIGDAD-----NQVVFKHKIMDSVLLKSGNWVKKID 1066

Query: 122  IK---------ADLIFDEYIGIDLHRK 135
            +K          +LI  +Y+G+D+H+K
Sbjct: 1067 VKRALISEDLSINLISSDYVGLDIHQK 1087

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BLAST of MELO3C021565 vs. Swiss-Prot
Match: HFM1_HUMAN (Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1 PE=1 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 1.3e-06
Identity = 41/144 (28.47%), Postives = 71/144 (49.31%), Query Frame = 1


Query: 2    GIKSFEALAEADPRKIEIVTGRKYPFGNHIKESLSSLPPKVDLKLEEAECPKQGKAKLIV 61
            G+ SF+ + E D R++E++  R  PFG  IKE++  L PK +LK+E+        A+++V
Sbjct: 949  GLTSFKKIEETDARELELILNRHPPFGTQIKETVMYL-PKYELKVEQITRYSDTTAEILV 1008

Query: 62   TLTRMPQSYRPNKR-----HYAEMLI----NQQNFL-KRHISYHFDYGPYSTVVLLSHPQ 121
            T+          KR     HY  ++I    NQ  +L K   S     G ++  + +    
Sbjct: 1009 TVILRNFEQLQTKRTASDSHYVTLIIGDADNQVVYLHKITDSVLLKAGSWAKKIAVKRAL 1068

Query: 122  QGKLTIKADLIFDEYIGIDLHRKL 136
            + +  +  +LI  E++G+D+ +KL
Sbjct: 1069 KSE-DLSINLISSEFVGLDIQQKL 1090

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BLAST of MELO3C021565 vs. TrEMBL
Match: A0A0A0KSF5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G523170 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 3.6e-88
Identity = 167/196 (85.20%), Postives = 176/196 (89.80%), Query Frame = 1


Query: 1   MGIKSFEALAEADPRKIEIVTGRKYPFGNHIKESLSSLPPKVDLKLEEAECPKQGKAKLI 60
           MGI+SFEALAEADPRKIEIVTGRKYPFGNHIKESLSSLPPKVDLKLEEAECPKQGKAKLI
Sbjct: 668 MGIESFEALAEADPRKIEIVTGRKYPFGNHIKESLSSLPPKVDLKLEEAECPKQGKAKLI 727

Query: 61  VTLTRMPQSYRPNKRHYAEMLINQQ--NFLKRHISYHFDY--GPYSTVVLLSHPQQGKLT 120
           VTLTR+PQSYRPNKRHYAEM++  +  N +  H     D    PYSTV L+SHPQQGKLT
Sbjct: 728 VTLTRLPQSYRPNKRHYAEMIVGSEEDNQILFHEKIRVDEFSSPYSTVALISHPQQGKLT 787

Query: 121 IKADLIFDEYIGIDLHRKLQLMEQNLNVRNKWGRMPPSSHPPEEVYVIDDDGEPLPQAAT 180
           IKADLIFDEYIGIDLHRKLQLMEQNLNVRNKWG+MPPSSHPPEEV VIDDD EP PQAAT
Sbjct: 788 IKADLIFDEYIGIDLHRKLQLMEQNLNVRNKWGKMPPSSHPPEEVCVIDDDSEPPPQAAT 847

Query: 181 NELPISGDLNPLLDSM 193
           +ELPISGDLNPLLDSM
Sbjct: 848 DELPISGDLNPLLDSM 863

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BLAST of MELO3C021565 vs. TrEMBL
Match: M5X6Y6_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa018570mg PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 8.2e-56
Identity = 114/196 (58.16%), Postives = 147/196 (75.00%), Query Frame = 1


Query: 1   MGIKSFEALAEADPRKIEIVTGRKYPFGNHIKESLSSLPPKVDLKLEEAECPKQGKAKLI 60
           MG+KSF  LAEADPR+IEIVTGRKYPFGNH+K+SL SLPPKV++K+EE EC +QGK KL+
Sbjct: 717 MGVKSFGTLAEADPRRIEIVTGRKYPFGNHLKDSLHSLPPKVEMKVEETECQRQGKLKLV 776

Query: 61  VTLTRMPQSYRPNKRHYAEMLI--NQQNFLKRH--ISYHFDYGPYSTVVLLSHPQQGKLT 120
           VTLTR+ Q+++P KRHYA+M++   + N +  H  I       PY+  +LLS+PQQGKLT
Sbjct: 777 VTLTRLSQTFQPTKRHYADMIVGSEEDNLILFHEKIRVQEFSSPYNATILLSNPQQGKLT 836

Query: 121 IKADLIFDEYIGIDLHRKLQLMEQNLNVRNKWGRMPPSSHPPEEVYVIDDDGEPLPQAAT 180
           +KA+LIF+EYIGID+++KL  M+ NL+V NK G+ PPS  PPEEV +I+DD   + Q  T
Sbjct: 837 VKANLIFEEYIGIDIYQKLIFMKDNLSVNNKRGKKPPSFPPPEEVCIIEDDA--IHQPPT 896

Query: 181 NELPISGDLNPLLDSM 193
            ELP S     L DSM
Sbjct: 897 KELPNSTKSKRLNDSM 910

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BLAST of MELO3C021565 vs. TrEMBL
Match: A5BSN4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001171 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 7.2e-52
Identity = 112/194 (57.73%), Postives = 145/194 (74.74%), Query Frame = 1


Query: 1   MGIKSFEALAEADPRKIEIVTGRKYPFGNHIKESLSSLPPKVDLKLEEAECPKQGKAKLI 60
           MGI SFEALAEADPR+IEIVTGRKYPFGNHIKESLSSLPPKV+LK+EE EC +QGK+K++
Sbjct: 608 MGIVSFEALAEADPRRIEIVTGRKYPFGNHIKESLSSLPPKVELKIEEIECQRQGKSKIV 667

Query: 61  VTLTRMPQSYRPNKRHYAEMLINQQNFLKRHISYHFDYGPYSTVVLLSHPQQGKLTIKAD 120
           + LTR+ QS++  KR+YA+M++  +      I +H    PYST +LLS PQQGKLT+KAD
Sbjct: 668 LILTRLSQSFQSIKRYYADMVVGLEE--DNLILFHEKISPYSTTILLSTPQQGKLTVKAD 727

Query: 121 LIFDEYIGIDLHRKLQLMEQ-NLNVRNKWGRMPPSSHP-PEEVYVIDDDGEPLPQAATNE 180
           LIF+EYIGIDLH+KL ++++ N N+ +  G    SS P P+EVYVI+DD E     ++  
Sbjct: 728 LIFEEYIGIDLHQKLLVVKEINSNMIHXRGSKQLSSFPLPKEVYVIEDDNEDXSHXSSKG 787

Query: 181 LPISGDLNPLLDSM 193
           L IS      +DS+
Sbjct: 788 LDISKKSKREMDSL 799

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BLAST of MELO3C021565 vs. TrEMBL
Match: A0A067EMW8_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0016681mg PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.2e-51
Identity = 110/185 (59.46%), Postives = 135/185 (72.97%), Query Frame = 1


Query: 1   MGIKSFEALAEADPRKIEIVTGRKYPFGNHIKESLSSLPPKVDLKLEEAECPKQGKAKLI 60
           MGIKSFE LAEADPR+IEIVTGRKYPFGNHIKESL SLPPKVD+K+EE +C  QGK+KL+
Sbjct: 305 MGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSLPPKVDMKIEEIKCQGQGKSKLL 364

Query: 61  VTLTRMPQSYRPNKRHYAEMLI--NQQNFLKRHISYHFD--YGPYSTVVLLSHPQQGKLT 120
           +TLTR+ QS +  KRHYA+M++   + N +  H     D    PYS  VL S+PQQGKLT
Sbjct: 365 ITLTRLSQSVQSTKRHYADMIVGAEENNMVLFHEKIRVDEFSSPYSVTVLSSNPQQGKLT 424

Query: 121 IKADLIFDEYIGIDLHRKLQLM-EQNLNVRNKWG-RMPPSSHPPEEVYVIDDDGEPLPQA 180
           +KADLIF+EYIG+D+H+KL L+ E N NV  K G +  P  H PEEV VI+D+ E   Q 
Sbjct: 425 VKADLIFEEYIGVDIHQKLVLVKESNSNVNRKCGHKQSPLFHTPEEVCVIEDENETAAQT 484

[Close]

BLAST of MELO3C021565 vs. TrEMBL
Match: F6HUX6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0066g00880 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 7.9e-51
Identity = 114/199 (57.29%), Postives = 150/199 (75.38%), Query Frame = 1


Query: 1   MGIKSFEALAEADPRKIEIVTGRKYPFGNHIKESLSSLPPKVDLKLEEAECPKQGKAKLI 60
           MGI SFEALAEADPR+IEIVTGRKYPFGNHIKESLSSLPPKV+LK+EE EC +QGK+K++
Sbjct: 714 MGIVSFEALAEADPRRIEIVTGRKYPFGNHIKESLSSLPPKVELKIEEIECQRQGKSKIV 773

Query: 61  VTLTRMPQSYRPNKRHYAEMLI--NQQNFLKRH--ISYHFDY-GPYSTVVLLSHPQQGKL 120
           + LTR+ QS++  KR+YA+M++   + N +  H  IS   ++  PYST +LLS PQQGKL
Sbjct: 774 LILTRLSQSFQSIKRYYADMVVGLEEDNLILFHEKISRVDEFSSPYSTTILLSTPQQGKL 833

Query: 121 TIKADLIFDEYIGIDLHRKLQLMEQ-NLNVRNKWGRMPPSSHP-PEEVYVIDDDGEPLPQ 180
           T+KADLIF+EYIGIDLH+KL ++++ N N+ +  G    SS P P+EVYVI+DD E    
Sbjct: 834 TVKADLIFEEYIGIDLHQKLLVVKEINSNMIHARGSKQLSSFPLPKEVYVIEDDNEDASH 893

Query: 181 AATNELPISGDLNPLLDSM 193
           +++  L IS      +DS+
Sbjct: 894 SSSKGLDISKKSKREMDSL 912

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BLAST of MELO3C021565 vs. TAIR10
Match: AT3G27730.1 (AT3G27730.1 ATP binding;ATP-dependent helicases;DNA helicases)

HSP 1 Score: 180.6 bits (457), Expect = 8.9e-46
Identity = 99/191 (51.83%), Postives = 124/191 (64.92%), Query Frame = 1


Query: 1   MGIKSFEALAEADPRKIEIVTGRKYPFGNHIKESLSSLPPKVDLKLEEAECPKQGKAKLI 60
           MG++SFEALAEADPR+IEIVTGRKYPFGN IKESLSSLPPKV++K+EE +C KQG +KL 
Sbjct: 711 MGVRSFEALAEADPRRIEIVTGRKYPFGNTIKESLSSLPPKVEIKVEEVDCQKQGISKLA 770

Query: 61  VTLTRMPQSYRPNKRHYAEMLI--NQQNFLKRHISYHFD--YGPYSTVVLLSHP-QQGKL 120
           VTL+R+ Q  +  KRHYA++++   ++N +  H     +    PYS  VLL  P QQ K+
Sbjct: 771 VTLSRVSQPLQSTKRHYADLIVGSEEENLIHFHEKIRMEDFSSPYSVTVLLERPHQQTKV 830

Query: 121 TIKADLIFDEYIGIDLHRKLQLMEQNLN-VRNKWGRMPPSSHPPEEVYVIDDDGEPLPQA 180
           T+KADLIF+EYIGIDLH  L L + N N V  K     P  +PP     I DD  P+   
Sbjct: 831 TVKADLIFEEYIGIDLHETLLLKKANNNKVNYKSENRMPQYYPPMASACIADDDNPVTSG 890

Query: 181 ATNELPISGDL 186
            +N      D+
Sbjct: 891 PSNRKDKKDDM 901

[Close]

BLAST of MELO3C021565 vs. NCBI nr
Match: gi|659117787|ref|XP_008458787.1| (PREDICTED: probable ATP-dependent DNA helicase HFM1 isoform X2 [Cucumis melo])

HSP 1 Score: 349.0 bits (894), Expect = 5.4e-93
Identity = 176/196 (89.80%), Postives = 180/196 (91.84%), Query Frame = 1


Query: 1   MGIKSFEALAEADPRKIEIVTGRKYPFGNHIKESLSSLPPKVDLKLEEAECPKQGKAKLI 60
           MGIKSFEALAEADPRKIEIVTGRKYPFGNHIKESLSSLPPKVDLKLEEAECPKQGKAKLI
Sbjct: 525 MGIKSFEALAEADPRKIEIVTGRKYPFGNHIKESLSSLPPKVDLKLEEAECPKQGKAKLI 584

Query: 61  VTLTRMPQSYRPNKRHYAEMLINQQ--NFLKRHISYHFDY--GPYSTVVLLSHPQQGKLT 120
           VTLTRMPQSYRPNKRHYAEM++  +  N +  H     D    PYSTVVLLSHPQQGKLT
Sbjct: 585 VTLTRMPQSYRPNKRHYAEMIVGSEEDNQILFHEKIRVDEFSSPYSTVVLLSHPQQGKLT 644

Query: 121 IKADLIFDEYIGIDLHRKLQLMEQNLNVRNKWGRMPPSSHPPEEVYVIDDDGEPLPQAAT 180
           IKADLIFDEYIGIDLHRKLQLMEQNLNVRNKWGRMPPSSHPPEEVYVIDDDGEPLPQAAT
Sbjct: 645 IKADLIFDEYIGIDLHRKLQLMEQNLNVRNKWGRMPPSSHPPEEVYVIDDDGEPLPQAAT 704

Query: 181 NELPISGDLNPLLDSM 193
           NELPISGDLNPLLDSM
Sbjct: 705 NELPISGDLNPLLDSM 720

[Close]

BLAST of MELO3C021565 vs. NCBI nr
Match: gi|659117785|ref|XP_008458786.1| (PREDICTED: probable ATP-dependent DNA helicase HFM1 isoform X1 [Cucumis melo])

HSP 1 Score: 349.0 bits (894), Expect = 5.4e-93
Identity = 176/196 (89.80%), Postives = 180/196 (91.84%), Query Frame = 1


Query: 1   MGIKSFEALAEADPRKIEIVTGRKYPFGNHIKESLSSLPPKVDLKLEEAECPKQGKAKLI 60
           MGIKSFEALAEADPRKIEIVTGRKYPFGNHIKESLSSLPPKVDLKLEEAECPKQGKAKLI
Sbjct: 710 MGIKSFEALAEADPRKIEIVTGRKYPFGNHIKESLSSLPPKVDLKLEEAECPKQGKAKLI 769

Query: 61  VTLTRMPQSYRPNKRHYAEMLINQQ--NFLKRHISYHFDY--GPYSTVVLLSHPQQGKLT 120
           VTLTRMPQSYRPNKRHYAEM++  +  N +  H     D    PYSTVVLLSHPQQGKLT
Sbjct: 770 VTLTRMPQSYRPNKRHYAEMIVGSEEDNQILFHEKIRVDEFSSPYSTVVLLSHPQQGKLT 829

Query: 121 IKADLIFDEYIGIDLHRKLQLMEQNLNVRNKWGRMPPSSHPPEEVYVIDDDGEPLPQAAT 180
           IKADLIFDEYIGIDLHRKLQLMEQNLNVRNKWGRMPPSSHPPEEVYVIDDDGEPLPQAAT
Sbjct: 830 IKADLIFDEYIGIDLHRKLQLMEQNLNVRNKWGRMPPSSHPPEEVYVIDDDGEPLPQAAT 889

Query: 181 NELPISGDLNPLLDSM 193
           NELPISGDLNPLLDSM
Sbjct: 890 NELPISGDLNPLLDSM 905

[Close]

BLAST of MELO3C021565 vs. NCBI nr
Match: gi|659117791|ref|XP_008458789.1| (PREDICTED: probable ATP-dependent DNA helicase HFM1 isoform X3 [Cucumis melo])

HSP 1 Score: 349.0 bits (894), Expect = 5.4e-93
Identity = 176/196 (89.80%), Postives = 180/196 (91.84%), Query Frame = 1


Query: 1   MGIKSFEALAEADPRKIEIVTGRKYPFGNHIKESLSSLPPKVDLKLEEAECPKQGKAKLI 60
           MGIKSFEALAEADPRKIEIVTGRKYPFGNHIKESLSSLPPKVDLKLEEAECPKQGKAKLI
Sbjct: 523 MGIKSFEALAEADPRKIEIVTGRKYPFGNHIKESLSSLPPKVDLKLEEAECPKQGKAKLI 582

Query: 61  VTLTRMPQSYRPNKRHYAEMLINQQ--NFLKRHISYHFDY--GPYSTVVLLSHPQQGKLT 120
           VTLTRMPQSYRPNKRHYAEM++  +  N +  H     D    PYSTVVLLSHPQQGKLT
Sbjct: 583 VTLTRMPQSYRPNKRHYAEMIVGSEEDNQILFHEKIRVDEFSSPYSTVVLLSHPQQGKLT 642

Query: 121 IKADLIFDEYIGIDLHRKLQLMEQNLNVRNKWGRMPPSSHPPEEVYVIDDDGEPLPQAAT 180
           IKADLIFDEYIGIDLHRKLQLMEQNLNVRNKWGRMPPSSHPPEEVYVIDDDGEPLPQAAT
Sbjct: 643 IKADLIFDEYIGIDLHRKLQLMEQNLNVRNKWGRMPPSSHPPEEVYVIDDDGEPLPQAAT 702

Query: 181 NELPISGDLNPLLDSM 193
           NELPISGDLNPLLDSM
Sbjct: 703 NELPISGDLNPLLDSM 718

[Close]

BLAST of MELO3C021565 vs. NCBI nr
Match: gi|778703688|ref|XP_011655409.1| (PREDICTED: ATP-dependent DNA helicase MER3 homolog [Cucumis sativus])

HSP 1 Score: 332.4 bits (851), Expect = 5.2e-88
Identity = 167/196 (85.20%), Postives = 176/196 (89.80%), Query Frame = 1


Query: 1   MGIKSFEALAEADPRKIEIVTGRKYPFGNHIKESLSSLPPKVDLKLEEAECPKQGKAKLI 60
           MGI+SFEALAEADPRKIEIVTGRKYPFGNHIKESLSSLPPKVDLKLEEAECPKQGKAKLI
Sbjct: 710 MGIESFEALAEADPRKIEIVTGRKYPFGNHIKESLSSLPPKVDLKLEEAECPKQGKAKLI 769

Query: 61  VTLTRMPQSYRPNKRHYAEMLINQQ--NFLKRHISYHFDY--GPYSTVVLLSHPQQGKLT 120
           VTLTR+PQSYRPNKRHYAEM++  +  N +  H     D    PYSTV L+SHPQQGKLT
Sbjct: 770 VTLTRLPQSYRPNKRHYAEMIVGSEEDNQILFHEKIRVDEFSSPYSTVALISHPQQGKLT 829

Query: 121 IKADLIFDEYIGIDLHRKLQLMEQNLNVRNKWGRMPPSSHPPEEVYVIDDDGEPLPQAAT 180
           IKADLIFDEYIGIDLHRKLQLMEQNLNVRNKWG+MPPSSHPPEEV VIDDD EP PQAAT
Sbjct: 830 IKADLIFDEYIGIDLHRKLQLMEQNLNVRNKWGKMPPSSHPPEEVCVIDDDSEPPPQAAT 889

Query: 181 NELPISGDLNPLLDSM 193
           +ELPISGDLNPLLDSM
Sbjct: 890 DELPISGDLNPLLDSM 905

[Close]

BLAST of MELO3C021565 vs. NCBI nr
Match: gi|700196195|gb|KGN51372.1| (hypothetical protein Csa_5G523170 [Cucumis sativus])

HSP 1 Score: 332.4 bits (851), Expect = 5.2e-88
Identity = 167/196 (85.20%), Postives = 176/196 (89.80%), Query Frame = 1


Query: 1   MGIKSFEALAEADPRKIEIVTGRKYPFGNHIKESLSSLPPKVDLKLEEAECPKQGKAKLI 60
           MGI+SFEALAEADPRKIEIVTGRKYPFGNHIKESLSSLPPKVDLKLEEAECPKQGKAKLI
Sbjct: 668 MGIESFEALAEADPRKIEIVTGRKYPFGNHIKESLSSLPPKVDLKLEEAECPKQGKAKLI 727

Query: 61  VTLTRMPQSYRPNKRHYAEMLINQQ--NFLKRHISYHFDY--GPYSTVVLLSHPQQGKLT 120
           VTLTR+PQSYRPNKRHYAEM++  +  N +  H     D    PYSTV L+SHPQQGKLT
Sbjct: 728 VTLTRLPQSYRPNKRHYAEMIVGSEEDNQILFHEKIRVDEFSSPYSTVALISHPQQGKLT 787

Query: 121 IKADLIFDEYIGIDLHRKLQLMEQNLNVRNKWGRMPPSSHPPEEVYVIDDDGEPLPQAAT 180
           IKADLIFDEYIGIDLHRKLQLMEQNLNVRNKWG+MPPSSHPPEEV VIDDD EP PQAAT
Sbjct: 788 IKADLIFDEYIGIDLHRKLQLMEQNLNVRNKWGKMPPSSHPPEEVCVIDDDSEPPPQAAT 847

Query: 181 NELPISGDLNPLLDSM 193
           +ELPISGDLNPLLDSM
Sbjct: 848 DELPISGDLNPLLDSM 863

The following BLAST results are available for this feature:

BLAST of MELO3C021565 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MER3_ARATH	1.6e-44	51.83	DExH-box ATP-dependent RNA helicase DExH17 OS=Arabidopsis thaliana GN=MER3 PE=2 ...	[more]
MER3_ORYSJ	5.1e-27	37.11	ATP-dependent DNA helicase MER3 homolog OS=Oryza sativa subsp. japonica GN=MER3 ...	[more]
HFM1_MOUSE	9.1e-08	28.57	Probable ATP-dependent DNA helicase HFM1 OS=Mus musculus GN=Hfm1 PE=3 SV=2	[more]
HFM1_HUMAN	1.3e-06	28.47	Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1 PE=1 SV=2	[more]

BLAST of MELO3C021565 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSF5_CUCSA	3.6e-88	85.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G523170 PE=4 SV=1	[more]
M5X6Y6_PRUPE	8.2e-56	58.16	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa018570mg PE=4 S...	[more]
A5BSN4_VITVI	7.2e-52	57.73	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001171 PE=4 SV=1	[more]
A0A067EMW8_CITSI	1.2e-51	59.46	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0016681mg PE=4 ...	[more]
F6HUX6_VITVI	7.9e-51	57.29	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0066g00880 PE=4 SV=...	[more]

BLAST of MELO3C021565 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G27730.1	8.9e-46	51.83	ATP binding;ATP-dependent helicases;DNA helicases	[more]

BLAST of MELO3C021565 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659117787\|ref\|XP_008458787.1\|	5.4e-93	89.80	PREDICTED: probable ATP-dependent DNA helicase HFM1 isoform X2 [Cucumis melo]	[more]
gi\|659117785\|ref\|XP_008458786.1\|	5.4e-93	89.80	PREDICTED: probable ATP-dependent DNA helicase HFM1 isoform X1 [Cucumis melo]	[more]
gi\|659117791\|ref\|XP_008458789.1\|	5.4e-93	89.80	PREDICTED: probable ATP-dependent DNA helicase HFM1 isoform X3 [Cucumis melo]	[more]
gi\|778703688\|ref\|XP_011655409.1\|	5.2e-88	85.20	PREDICTED: ATP-dependent DNA helicase MER3 homolog [Cucumis sativus]	[more]
gi\|700196195\|gb\|KGN51372.1\|	5.2e-88	85.20	hypothetical protein Csa_5G523170 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007131	reciprocal meiotic recombination
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C021565T1	MELO3C021565T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C021565	Cucurbita pepo (Zucchini)	cpemeB155
MELO3C021565	Cucurbita pepo (Zucchini)	cpemeB358
MELO3C021565	Cucurbita pepo (Zucchini)	cpemeB467
MELO3C021565	Cucurbita pepo (Zucchini)	cpemeB550
MELO3C021565	Cucurbita pepo (Zucchini)	cpemeB594
MELO3C021565	Bottle gourd (USVL1VR-Ls)	lsimeB162
MELO3C021565	Bottle gourd (USVL1VR-Ls)	lsimeB163
MELO3C021565	Bottle gourd (USVL1VR-Ls)	lsimeB234
MELO3C021565	Cucumber (Gy14) v2	cgybmeB001
MELO3C021565	Cucumber (Gy14) v2	cgybmeB140
MELO3C021565	Cucumber (Gy14) v2	cgybmeB300
MELO3C021565	Silver-seed gourd	carmeB0260
MELO3C021565	Silver-seed gourd	carmeB0370
MELO3C021565	Silver-seed gourd	carmeB0441
MELO3C021565	Silver-seed gourd	carmeB0682
MELO3C021565	Wax gourd	mewgoB022
MELO3C021565	Cucumber (Chinese Long) v3	cucmeB000
MELO3C021565	Cucumber (Chinese Long) v3	cucmeB164
MELO3C021565	Cucumber (Chinese Long) v3	cucmeB359
MELO3C021565	Watermelon (97103) v2	mewmbB013
MELO3C021565	Watermelon (97103) v2	mewmbB038
MELO3C021565	Wax gourd	mewgoB002
MELO3C021565	Wax gourd	mewgoB044
MELO3C021565	Melon (DHL92) v3.5.1	memeB012
MELO3C021565	Melon (DHL92) v3.5.1	memeB013
MELO3C021565	Cucumber (Gy14) v1	cgymeB114
MELO3C021565	Cucumber (Gy14) v1	cgymeB336
MELO3C021565	Cucumber (Gy14) v1	cgymeB549
MELO3C021565	Cucurbita maxima (Rimu)	cmameB081
MELO3C021565	Cucurbita maxima (Rimu)	cmameB212
MELO3C021565	Cucurbita maxima (Rimu)	cmameB251
MELO3C021565	Cucurbita maxima (Rimu)	cmameB634
MELO3C021565	Cucurbita moschata (Rifu)	cmomeB075
MELO3C021565	Cucurbita moschata (Rifu)	cmomeB196
MELO3C021565	Cucurbita moschata (Rifu)	cmomeB239
MELO3C021565	Cucurbita moschata (Rifu)	cmomeB624
MELO3C021565	Wild cucumber (PI 183967)	cpimeB000
MELO3C021565	Wild cucumber (PI 183967)	cpimeB162
MELO3C021565	Wild cucumber (PI 183967)	cpimeB350
MELO3C021565	Cucumber (Chinese Long) v2	cumeB005
MELO3C021565	Cucumber (Chinese Long) v2	cumeB172
MELO3C021565	Cucumber (Chinese Long) v2	cumeB360
MELO3C021565	Watermelon (Charleston Gray)	mewcgB002
MELO3C021565	Watermelon (Charleston Gray)	mewcgB006
MELO3C021565	Watermelon (Charleston Gray)	mewcgB017
MELO3C021565	Watermelon (97103) v1	mewmB003
MELO3C021565	Watermelon (97103) v1	mewmB007