MELO3C021535 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C021535
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionMAU2 chromatid cohesion factor homolog
Locationchr9 : 3205165 .. 3208257 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTGTAAAAGTATTCTTCTTTCTTCTTCTTCTAGTAGGAGAGTCCACTCAGCTTCCATGGCAGCATCAGCATCGAACTCTGAAGCAGAAATGAAAAGGGAAGAACTACCAAAATCCATGGAAGAACCACAAGAACAAGTACACGAACAACCTCACCATAACCAATCAGATGAAGGCGAAAACGACAACGAATCCCATCTCCATCTCTCTGCCTGCTCTTCACCTCCTCATTCCCTCTCCACCAGCAAAGATCCCTCGCCGCCTCTCCACTCTCCCTCCATCTCCTCCGATTTCTCCGATCACACTTGTCACTCTCGTGGAAACTCCTCCATTGACGACGTTCAGGACTTACCTCCCTCCGCTAATCCTCCATCTCCCAGACCTGTAGCAGCCAACCGCGCGCAGCCATCTGAGCCGATTGTTGTGACGAAGGTGGATACTGAAATACAGGGGGTGCGGAAGGTGGAAGAGGTTAGCGATAGTAAGATGGCGATGAATAGAGAGTGCCGATGGCGGTAAGGTTGGGCGAGGACGGAAGTTGATGGAGAGTTTATCGATTAAGAAAATTAAGGAGGAGGAATTGAGGAAGAAGATCTTGTTAGGGTTTAGAATTTGTGGATTTTCCTTCTGTTTGGTCTCGGTTTCGGTTATGGCTTCTGATAAGGATCAGGGCTGGGCTTTGGATTCATTCTATCGCTATAAGGAATTCCGGTAATCAATTCGTTCAATGAAACCATTTCTTCCTATTGAAATTTCTTATGCAATTTCCTTTTAACTTCAATTGAATTGGATATTCTAAAGTTGATTCAATTTGGGAATTTCATTAAATTTGTAGGTACTGTATGGCAGTGAATGTTATTGGATTTGTTTACTCTGCACTTCAATCCTATGATCTTGTCTATTTTCTCTCTACTGGAAAACACATGATCCGTAATCACTTCAAGCAATACTTCGATTTCTTCATTGATCAGGCAAGTTTCTATTTTGGCTTGAAATTGGGTTTCTGAATTTCAATCTTTTTCATTATTAATTCTGTGATAATCTCAGTACCTAACCCAAAATACATCACACTCAACACATTGGATGGCTAAGATTAGGCCAATAGTTTAGTCCTGAATTTAGATGACATTATTGTGTACCGATTATGATAGCTTATAGGACCCACTGAAGATAGAAAAGTTATGCATAATTCCCAATAGTCATTAGATAGATGGTTCTCTTTCTGTATTCCTTTACTGAAAATTTTTCCATTCATCATGACGCTTTTTCTTACCTTTTTCATACCGAAGAAATCTGTAAGTTCTTCAATATTTAAAAAAATCTGCAAGCTCTTTCCATGAAGAGCTTACTAATACTTTTACCTTAAAGTCGCTCAATTTCTATATTAATAACAGAGTAGTGGTTGGAAAAACTTGGATTGGTTTGGTTTGGTTGAGTAACTTTCCTTATATTCTGTCCATTTTATTTGCTTTAGCTTTTGGGCATCCTTTTTATTACCTTTTCTCTGCTACTGCCGCCTTTCCCTCGCATCTTTCTTATTTTTCCTTTTTATTCTTAAAGTTCGTAAGGAAGCTAGCTTTATTTTGCAGCAAAGAATCTAGTATAGAAATTAATAATCACTTGGTTATAAAAAATTAAAGAAAAATGAACTTCTGGCCATAACTACTATAAGCTACAAAATAATAATAAATAAATAAAATAAAGGGAAAAATCCTTCACACTTTTGAACTTGTAATTTTAGGAATTTTCCACCAAGGTGAGCATATCTCAAGTGACATATGTAGGGCTGTGCATTGATTTCGACCTTGACCTTTGGGGAGTGCAAATCGGTTGTCGGCCAGTTTTAATTTTTTTTAATTTTTTTAAAAAGAAAACTGCTGTTTTGGACTTTCCGAAATCGATGTTAACCAAGTCCCTCCTTATCTCCGACCAACCACCTTTGGTTCCGTCGATTTTGGTTGGTTAGCTCGGTTTTTCAGTCTATTATGCTAACTCATAGATATATGTCTTTTGAATTCAAATAACTACTCTTGTTATGTACTTGAACAAAAAGAAACTTTCCTTTGAAATTGTATAATCATTCCAATTAATTCTTATTACACTTGCTATAAGTGGTTGAGTTTTAGTAGTCATCTGGCTTAAAAAATTCAATGGTGTTATTACAAAACAGTCCTTGTAATTTAAGAATGATTTAAGGTTTGGAATTGAAGTGTAACAATCTTAAACCTTGTAGTTAGAGGCAGGCTGCACATTTTTCAAGTTGCAACTATATGGAGTTTGGATTACTAAGTTTAATGATTGTTTAAAGTGAAAAAGCTAAGATACAATTGTAATAACTCTTGTAGTCTAAGGTAGTTTTTGAATTTTTAACTTTATGGATAGAACTGAGTCATGATCCAAACATTCAATCTCACATGAAGTTACTAATAAACATTTCATTAGTGTTCGAGGTTCGCTACATTTGGTGATAATCATAAAGAAATTGATAACTGTGTTGTTCTGCTGCAGATAATAGCATATCTTCTTCTATCAGCTTCGTCTTCGGCTGCCACCCGAATCGATGATTGGCAATCCAATTGGGGAAGGGACAAGTTTCCTGACATGGCTACCGGGTCGTTGGCATTGTCCATTGTTGCATTTGTTGCTTTTGCCTTGAGTTGTATAATCTCTGGTTATACCCTATGTAAATCTGCTTAGGTAACCTTTGCTGGACTTGCTTGTTGGCGAACTTGATTCAATGATGATGATAGCAACAAACAAACACAATGGTGATGAGGATATGCAAGAAGATTTGTTTCAACATTGTGCTGTGAATTAGGCATGCTTTCACTTGGAAAATATATTTGGGAGTTTACTTAATTCTTTGTAAATAGGATGAAGAACACTTGTTGTGCACTTTACATGCACTTTGAATCATTACAAGTTGAAGGGAAAGAGTGAATAGGGAAAAGTTAGAGGAAGTTATTCAATGTTTTTATAAATTGCTAAAATGGGAGAAAACCATGACTCAATTACATGATAAAACAATAGTATCTAAGTCAAGGTAAAGTTAATAAGAGGGATGTTTTTGGTTGACGATCCAATAAGTTTAAGA

mRNA sequence

GGTGTAAAAGTATTCTTCTTTCTTCTTCTTCTAGTAGGAGAGTCCACTCAGCTTCCATGGCAGCATCAGCATCGAACTCTGAAGCAGAAATGAAAAGGGAAGAACTACCAAAATCCATGGAAGAACCACAAGAACAAGTACACGAACAACCTCACCATAACCAATCAGATGAAGGCGAAAACGACAACGAATCCCATCTCCATCTCTCTGCCTGCTCTTCACCTCCTCATTCCCTCTCCACCAGCAAAGATCCCTCGCCGCCTCTCCACTCTCCCTCCATCTCCTCCGATTTCTCCGATCACACTTGTCACTCTCGTGGAAACTCCTCCATTGACGACGTTCAGGACTTACCTCCCTCCGCTAATCCTCCATCTCCCAGACCTGTAGCAGCCAACCGCGCGCAGCCATCTGAGCCGATTGTTGTGACGAAGGTGGATACTGAAATACAGGGGGTGCGGAAGGTGGAAGAGGTTAGCGATAGTAAGATGGCGATGAATAGAGAGTGCCGATGGCGGTAAGGTTGGGCGAGGACGGAAGTTGATGGAGAGTTTATCGATTAAGAAAATTAAGGAGGAGGAATTGAGGAAGAAGATCTTGTTAGGGTTTAGAATTTGTGGATTTTCCTTCTGTTTGGTCTCGGTTTCGGTTATGGCTTCTGATAAGGATCAGGGCTGGGCTTTGGATTCATTCTATCGCTATAAGGAATTCCGGTAATCAATTCGTTCAATGAAACCATTTCTTCCTATTGAAATTTCTTATGCAATTTCCTTTTAACTTCAATTGAATTGGATATTCTAAAGTTGATTCAATTTGGGAATTTCATTAAATTTGTAGGTACTGTATGGCAGTGAATGTTATTGGATTTGTTTACTCTGCACTTCAATCCTATGATCTTGTCTATTTTCTCTCTACTGGAAAACACATGATCCGTAATCACTTCAAGCAATACTTCGATTTCTTCATTGATCAGATAATAGCATATCTTCTTCTATCAGCTTCGTCTTCGGCTGCCACCCGAATCGATGATTGGCAATCCAATTGGGGAAGGGACAAGTTTCCTGACATGGCTACCGGGTCGTTGGCATTGTCCATTGTTGCATTTGTTGCTTTTGCCTTGAGTTGTATAATCTCTGGTTATACCCTATGTAAATCTGCTTAGGTAACCTTTGCTGGACTTGCTTGTTGGCGAACTTGATTCAATGATGATGATAGCAACAAACAAACACAATGGTGATGAGGATATGCAAGAAGATTTGTTTCAACATTGTGCTGTGAATTAGGCATGCTTTCACTTGGAAAATATATTTGGGAGTTTACTTAATTCTTTGTAAATAGGATGAAGAACACTTGTTGTGCACTTTACATGCACTTTGAATCATTACAAGTTGAAGGGAAAGAGTGAATAGGGAAAAGTTAGAGGAAGTTATTCAATGTTTTTATAAATTGCTAAAATGGGAGAAAACCATGACTCAATTACATGATAAAACAATAGTATCTAAGTCAAGGTAAAGTTAATAAGAGGGATGTTTTTGGTTGACGATCCAATAAGTTTAAGA

Coding sequence (CDS)

ATGGCAGCATCAGCATCGAACTCTGAAGCAGAAATGAAAAGGGAAGAACTACCAAAATCCATGGAAGAACCACAAGAACAAGTACACGAACAACCTCACCATAACCAATCAGATGAAGGCGAAAACGACAACGAATCCCATCTCCATCTCTCTGCCTGCTCTTCACCTCCTCATTCCCTCTCCACCAGCAAAGATCCCTCGCCGCCTCTCCACTCTCCCTCCATCTCCTCCGATTTCTCCGATCACACTTGTCACTCTCGTGGAAACTCCTCCATTGACGACGTTCAGGACTTACCTCCCTCCGCTAATCCTCCATCTCCCAGACCTGTAGCAGCCAACCGCGCGCAGCCATCTGAGCCGATTGTTGTGACGAAGGTGGATACTGAAATACAGGGGGTGCGGAAGGTGGAAGAGGTTAGCGATAGTAAGATGGCGATGAATAGAGAGTGCCGATGGCGGTAA

Protein sequence

MAASASNSEAEMKREELPKSMEEPQEQVHEQPHHNQSDEGENDNESHLHLSACSSPPHSLSTSKDPSPPLHSPSISSDFSDHTCHSRGNSSIDDVQDLPPSANPPSPRPVAANRAQPSEPIVVTKVDTEIQGVRKVEEVSDSKMAMNRECRWR*
Homology
[Close]
BLAST of MELO3C021535 vs. TrEMBL
Match: A0A0A0KS01_CUCSA (CASP-like protein OS=Cucumis sativus GN=Csa_5G630810 PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.2e-62
Identity = 127/149 (85.23%), Postives = 133/149 (89.26%), Query Frame = 1 

Query: 2   AASASNSEAEMKREELPKSMEEPQEQVHEQPHHNQSDEGENDNESHLHLSACSSPPHSLS 61
           +ASASNSEAEMK+EELPKSMEEP EQ H  PHHNQSDEGE+DNESHLHLSACSSPPHSLS
Sbjct: 4   SASASNSEAEMKKEELPKSMEEPPEQEH--PHHNQSDEGEDDNESHLHLSACSSPPHSLS 63

Query: 62  TSKDPSPPLHSPSISSDFSDHTCHSRGNSSID------DVQD--LPPSANPPSPRPVAAN 121
           T+KDPSPPLHSPSISSDFSDHTCHS GNSSID       +QD  LPPSAN PSPRPVAAN
Sbjct: 64  TNKDPSPPLHSPSISSDFSDHTCHSPGNSSIDHALSITPLQDLHLPPSANSPSPRPVAAN 123

Query: 122 RAQPSEPIVVTKVDTEIQGVRKVEEVSDS 143
           RAQPSEPIVVTKVDTEIQG+RKVEEV DS
Sbjct: 124 RAQPSEPIVVTKVDTEIQGIRKVEEVIDS 150

[Close]
BLAST of MELO3C021535 vs. NCBI nr
Match: gi|659117721|ref|XP_008458753.1| (PREDICTED: CASP-like protein At5g40300 [Cucumis melo])

HSP 1 Score: 292.0 bits (746), Expect = 6.2e-76
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MAASASNSEAEMKREELPKSMEEPQEQVHEQPHHNQSDEGENDNESHLHLSACSSPPHSL 60
           MAASASNSEAEMKREELPKSMEEPQEQVHEQPHHNQSDEGENDNESHLHLSACSSPPHSL
Sbjct: 1   MAASASNSEAEMKREELPKSMEEPQEQVHEQPHHNQSDEGENDNESHLHLSACSSPPHSL 60

Query: 61  STSKDPSPPLHSPSISSDFSDHTCHSRGNSSIDDVQDLPPSANPPSPRPVAANRAQPSEP 120
           STSKDPSPPLHSPSISSDFSDHTCHSRGNSSIDDVQDLPPSANPPSPRPVAANRAQPSEP
Sbjct: 61  STSKDPSPPLHSPSISSDFSDHTCHSRGNSSIDDVQDLPPSANPPSPRPVAANRAQPSEP 120

Query: 121 IVVTKVDTEIQGVRKVEEVSDS 143
           IVVTKVDTEIQGVRKVEEVSDS
Sbjct: 121 IVVTKVDTEIQGVRKVEEVSDS 142

[Close]
BLAST of MELO3C021535 vs. NCBI nr
Match: gi|449449210|ref|XP_004142358.1| (PREDICTED: CASP-like protein 4A3 [Cucumis sativus])

HSP 1 Score: 247.3 bits (630), Expect = 1.8e-62
Identity = 127/149 (85.23%), Postives = 133/149 (89.26%), Query Frame = 1 

Query: 2   AASASNSEAEMKREELPKSMEEPQEQVHEQPHHNQSDEGENDNESHLHLSACSSPPHSLS 61
           +ASASNSEAEMK+EELPKSMEEP EQ H  PHHNQSDEGE+DNESHLHLSACSSPPHSLS
Sbjct: 4   SASASNSEAEMKKEELPKSMEEPPEQEH--PHHNQSDEGEDDNESHLHLSACSSPPHSLS 63

Query: 62  TSKDPSPPLHSPSISSDFSDHTCHSRGNSSID------DVQD--LPPSANPPSPRPVAAN 121
           T+KDPSPPLHSPSISSDFSDHTCHS GNSSID       +QD  LPPSAN PSPRPVAAN
Sbjct: 64  TNKDPSPPLHSPSISSDFSDHTCHSPGNSSIDHALSITPLQDLHLPPSANSPSPRPVAAN 123

Query: 122 RAQPSEPIVVTKVDTEIQGVRKVEEVSDS 143
           RAQPSEPIVVTKVDTEIQG+RKVEEV DS
Sbjct: 124 RAQPSEPIVVTKVDTEIQGIRKVEEVIDS 150

[Close]
BLAST of MELO3C021535 vs. NCBI nr
Match: gi|659116420|ref|XP_008458064.1| (PREDICTED: CASP-like protein At5g40300 [Cucumis melo])

HSP 1 Score: 70.1 bits (170), Expect = 3.9e-09
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = 1 

Query: 99  PPSANPPSPRPVAANRAQPSEPIVVTKVDTEIQGVRKVEEVSDS 143
           P +  P   R VAANRAQPSEPIVVTKVDTEIQGVRKVEEVSDS
Sbjct: 44  PYAGTPVRSRSVAANRAQPSEPIVVTKVDTEIQGVRKVEEVSDS 87

[Close]
BLAST of MELO3C021535 vs. NCBI nr
Match: gi|659121218|ref|XP_008460552.1| (PREDICTED: CASP-like protein ARALYDRAFT_482607 [Cucumis melo])

HSP 1 Score: 67.8 bits (164), Expect = 1.9e-08
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 1 

Query: 108 RPVAANRAQPSEPIVVTKVDTEIQGVRKVEEVSDS 143
           RPVAANRAQP EPIVVTKVDTEIQGVRKVEEVSDS
Sbjct: 48  RPVAANRAQPFEPIVVTKVDTEIQGVRKVEEVSDS 82

The following BLAST results are available for this feature:
BLAST of MELO3C021535 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KS01_CUCSA1.2e-6285.23CASP-like protein OS=Cucumis sativus GN=Csa_5G630810 PE=3 SV=1[more]
BLAST of MELO3C021535 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659117721|ref|XP_008458753.1|6.2e-76100.00PREDICTED: CASP-like protein At5g40300 [Cucumis melo][more]
gi|449449210|ref|XP_004142358.1|1.8e-6285.23PREDICTED: CASP-like protein 4A3 [Cucumis sativus][more]
gi|659116420|ref|XP_008458064.1|3.9e-0981.82PREDICTED: CASP-like protein At5g40300 [Cucumis melo][more]
gi|659121218|ref|XP_008460552.1|1.9e-0897.14PREDICTED: CASP-like protein ARALYDRAFT_482607 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005575 cellular_component
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0008270 zinc ion binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU53582melon EST collection version 4.0transcribed_cluster
MU58591melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C021535T1MELO3C021535T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU53582MU53582transcribed_cluster
MU58591MU58591transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C021535Csa5G630810Cucumber (Chinese Long) v2cumeB358
MELO3C021535Cla010397Watermelon (97103) v1mewmB003
MELO3C021535ClCG09G018890Watermelon (Charleston Gray)mewcgB002
MELO3C021535Cla97C09G180350Watermelon (97103) v2mewmbB038
MELO3C021535Bhi06G000424Wax gourdmewgoB022
MELO3C021535CSPI05G28160Wild cucumber (PI 183967)cpimeB349
MELO3C021535Cucsa.159030Cucumber (Gy14) v1cgymeB265
MELO3C021535CmaCh15G003310Cucurbita maxima (Rimu)cmameB251
MELO3C021535CmoCh15G003420Cucurbita moschata (Rifu)cmomeB239
MELO3C021535Lsi02G015590Bottle gourd (USVL1VR-Ls)lsimeB162
MELO3C021535Cp4.1LG13g08920Cucurbita pepo (Zucchini)cpemeB155
MELO3C021535CsGy5G027510Cucumber (Gy14) v2cgybmeB299
MELO3C021535Carg02296Silver-seed gourdcarmeB0260
MELO3C021535CsaV3_5G037240Cucumber (Chinese Long) v3cucmeB358
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C021535Watermelon (97103) v2mewmbB013
MELO3C021535Wax gourdmewgoB002
MELO3C021535Wax gourdmewgoB044
MELO3C021535Melon (DHL92) v3.5.1memeB012
MELO3C021535Melon (DHL92) v3.5.1memeB013
MELO3C021535Cucumber (Gy14) v1cgymeB114
MELO3C021535Cucumber (Gy14) v1cgymeB549
MELO3C021535Cucurbita maxima (Rimu)cmameB081
MELO3C021535Cucurbita maxima (Rimu)cmameB212
MELO3C021535Cucurbita maxima (Rimu)cmameB634
MELO3C021535Cucurbita moschata (Rifu)cmomeB075
MELO3C021535Cucurbita moschata (Rifu)cmomeB196
MELO3C021535Cucurbita moschata (Rifu)cmomeB624
MELO3C021535Wild cucumber (PI 183967)cpimeB000
MELO3C021535Wild cucumber (PI 183967)cpimeB162
MELO3C021535Cucumber (Chinese Long) v2cumeB005
MELO3C021535Cucumber (Chinese Long) v2cumeB172
MELO3C021535Watermelon (Charleston Gray)mewcgB006
MELO3C021535Watermelon (Charleston Gray)mewcgB017
MELO3C021535Watermelon (97103) v1mewmB007
MELO3C021535Cucurbita pepo (Zucchini)cpemeB358
MELO3C021535Cucurbita pepo (Zucchini)cpemeB467
MELO3C021535Cucurbita pepo (Zucchini)cpemeB550
MELO3C021535Cucurbita pepo (Zucchini)cpemeB594
MELO3C021535Bottle gourd (USVL1VR-Ls)lsimeB163
MELO3C021535Bottle gourd (USVL1VR-Ls)lsimeB234
MELO3C021535Cucumber (Gy14) v2cgybmeB001
MELO3C021535Cucumber (Gy14) v2cgybmeB140
MELO3C021535Silver-seed gourdcarmeB0370
MELO3C021535Silver-seed gourdcarmeB0441
MELO3C021535Silver-seed gourdcarmeB0682
MELO3C021535Cucumber (Chinese Long) v3cucmeB000
MELO3C021535Cucumber (Chinese Long) v3cucmeB164