MELO3C021498 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C021498
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	DNA-directed RNA polymerase subunit beta''
Location	chr9 : 2740137 .. 2740532 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTTGAGATATGGTATGGACGCAGTCGATTTAATTTCACAGAAGTCAATGAGAACAAAGGAGGAAATATAAGAACAAGCTTCGAGAGAGGAGTTCATGGCGATTATCATCCTTTAACTAATGATACAAAAACTTTGGCACATACTTTTGCACCAACAGATGGGAGATTTCACTTTAATGCTGATAAACCTTTTTCAGTTGAAGCTACATATGGTGCGTATCATTTGAAGACTATGGCATTGCATGAGCTTGGACATGCATTTGGGTTGGCTCATAGCCCAAGTGAAGATTCCATTGTGTTTCCCACTGTACCTACTAATCTTGAAAAGGATTTAGATACAGATGATATTAAAGGATTGTGGGAGTTATATGATGGATTTGGTGTTGCTTAA

mRNA sequence

ATGGCATTTGAGATATGGTATGGACGCAGTCGATTTAATTTCACAGAAGTCAATGAGAACAAAGGAGGAAATATAAGAACAAGCTTCGAGAGAGGAGTTCATGGCGATTATCATCCTTTAACTAATGATACAAAAACTTTGGCACATACTTTTGCACCAACAGATGGGAGATTTCACTTTAATGCTGATAAACCTTTTTCAGTTGAAGCTACATATGGTGCGTATCATTTGAAGACTATGGCATTGCATGAGCTTGGACATGCATTTGGGTTGGCTCATAGCCCAAGTGAAGATTCCATTGTGTTTCCCACTGTACCTACTAATCTTGAAAAGGATTTAGATACAGATGATATTAAAGGATTGTGGGAGTTATATGATGGATTTGGTGTTGCTTAA

Coding sequence (CDS)

ATGGCATTTGAGATATGGTATGGACGCAGTCGATTTAATTTCACAGAAGTCAATGAGAACAAAGGAGGAAATATAAGAACAAGCTTCGAGAGAGGAGTTCATGGCGATTATCATCCTTTAACTAATGATACAAAAACTTTGGCACATACTTTTGCACCAACAGATGGGAGATTTCACTTTAATGCTGATAAACCTTTTTCAGTTGAAGCTACATATGGTGCGTATCATTTGAAGACTATGGCATTGCATGAGCTTGGACATGCATTTGGGTTGGCTCATAGCCCAAGTGAAGATTCCATTGTGTTTCCCACTGTACCTACTAATCTTGAAAAGGATTTAGATACAGATGATATTAAAGGATTGTGGGAGTTATATGATGGATTTGGTGTTGCTTAA

Protein sequence

MAFEIWYGRSRFNFTEVNENKGGNIRTSFERGVHGDYHPLTNDTKTLAHTFAPTDGRFHFNADKPFSVEATYGAYHLKTMALHELGHAFGLAHSPSEDSIVFPTVPTNLEKDLDTDDIKGLWELYDGFGVA*

Homology

[Close]

BLAST of MELO3C021498 vs. Swiss-Prot
Match: 2MMP_ARATH (Metalloendoproteinase 2-MMP OS=Arabidopsis thaliana GN=2MMP PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-17
Identity = 50/132 (37.88%), Postives = 69/132 (52.27%), Query Frame = 1


Query: 2   AFEIWYGRSRFNFTEVNENKGGNIRTSFERGVHGDYHPLTNDTKTLAHTFAPTDGRFHFN 61
           AF  W   +  NFT        +I   F  G HGD  P      TLAH F+P  G+FH +
Sbjct: 192 AFGRWSDVTALNFTLSESFSTSDITIGFYTGDHGDGEPFDGVLGTLAHAFSPPSGKFHLD 251

Query: 62  ADKPFSVE-------ATYGAYHLKTMALHELGHAFGLAHSPSEDSIVFPTVPTNLEK-DL 121
           AD+ + V        +   A  L+++A+HE+GH  GL HS  E+SI++PT+ T   K DL
Sbjct: 252 ADENWVVSGDLDSFLSVTAAVDLESVAVHEIGHLLGLGHSSVEESIMYPTITTGKRKVDL 311

Query: 122 DTDDIKGLWELY 126
             DD++G+  LY
Sbjct: 312 TNDDVEGIQYLY 323

[Close]

BLAST of MELO3C021498 vs. Swiss-Prot
Match: 3MMP_ARATH (Metalloendoproteinase 3-MMP OS=Arabidopsis thaliana GN=3MMP PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-17
Identity = 50/133 (37.59%), Postives = 67/133 (50.38%), Query Frame = 1


Query: 2   AFEIWYGRSRFNFTEVNENKGGNIRTSFERGVHGDYHPLTNDTKTLAHTFAPTDGRFHFN 61
           AF  W   +   FT V      +I   F  G HGD  P     +TLAH F+P  G FH +
Sbjct: 196 AFTRWEEVTPLTFTRVERFSTSDISIGFYSGEHGDGEPFDGPMRTLAHAFSPPTGHFHLD 255

Query: 62  ADKPFSVEATYG--------AYHLKTMALHELGHAFGLAHSPSEDSIVFPTVPTNLEK-D 121
            ++ + V    G        A  L+++A+HE+GH  GL HS  E SI++PT+ T   K D
Sbjct: 256 GEENWIVSGEGGDGFISVSEAVDLESVAVHEIGHLLGLGHSSVEGSIMYPTIRTGRRKVD 315

Query: 122 LDTDDIKGLWELY 126
           L TDD++G+  LY
Sbjct: 316 LTTDDVEGVQYLY 328

[Close]

BLAST of MELO3C021498 vs. Swiss-Prot
Match: MEP1_SOYBN (Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-15
Identity = 47/131 (35.88%), Postives = 65/131 (49.62%), Query Frame = 1


Query: 2   AFEIWYGRSRFNFTEVNENKGGNIRTSFERGVHGDYHPLTNDTKTLAHTFAPTDGRFHFN 61
           AF  W       F E    +  NI+  F    HGD +P       L H FAPTDGR HF+
Sbjct: 171 AFSKWTPVVNIAFQETTSYETANIKILFASKNHGDPYPFDGPGGILGHAFAPTDGRCHFD 230

Query: 62  ADK------PFSVEATYGAYHLKTMALHELGHAFGLAHSPSEDSIVFPTVPTNLEK-DLD 121
           AD+        +      A+ L+++A+HE+GH  GL HS    +I++P++P    K +L 
Sbjct: 231 ADEYWVASGDVTKSPVTSAFDLESVAVHEIGHLLGLGHSSDLRAIMYPSIPPRTRKVNLA 290

Query: 122 TDDIKGLWELY 126
            DDI G+ +LY
Sbjct: 291 QDDIDGIRKLY 301

[Close]

BLAST of MELO3C021498 vs. Swiss-Prot
Match: 1MMP_ARATH (Metalloendoproteinase 1-MMP OS=Arabidopsis thaliana GN=1MMP PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.4e-15
Identity = 45/130 (34.62%), Postives = 70/130 (53.85%), Query Frame = 1


Query: 2   AFEIWYGRSRFNFTEVNENKGGNIRTSFERGVHGDYHPLTNDTKTLAHTFAPTDGRFHFN 61
           AF  W      +F EV++    +++  F  G HGD  P      TLAH FAP +GR H +
Sbjct: 189 AFSQWSSVIPVSFEEVDDFTTADLKIGFYAGDHGDGLPFDGVLGTLAHAFAPENGRLHLD 248

Query: 62  ADKPFSVE-----ATYGAYHLKTMALHELGHAFGLAHSPSEDSIVFPTV-PTNLEKDLDT 121
           A + + V+     ++  A  L+++A HE+GH  GL HS  E ++++P++ P   + DL  
Sbjct: 249 AAETWIVDDDLKGSSEVAVDLESVATHEIGHLLGLGHSSQESAVMYPSLRPRTKKVDLTV 308

Query: 122 DDIKGLWELY 126
           DD+ G+ +LY
Sbjct: 309 DDVAGVLKLY 318

[Close]

BLAST of MELO3C021498 vs. Swiss-Prot
Match: 4MMP_ARATH (Metalloendoproteinase 4-MMP OS=Arabidopsis thaliana GN=4MMP PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.6e-14
Identity = 44/129 (34.11%), Postives = 69/129 (53.49%), Query Frame = 1


Query: 2   AFEIWYGRSRFNFTEVNENKGGNIRTSFERGVHGDYHPLTNDTKTLAHTFAPTDGRFHFN 61
           AF  W      +F E  +    +I+  F  G HGD  P       LAHTF+P +GR H +
Sbjct: 167 AFGKWASVIPVSFIETEDYVIADIKIGFFNGDHGDGEPFDGVLGVLAHTFSPENGRLHLD 226

Query: 62  ADKPFSV----EATYGAYHLKTMALHELGHAFGLAHSPSEDSIVFPTV-PTNLEKDLDTD 121
             + ++V    E +  A  L+++A+HE+GH  GL HS  +D+ ++PT+ P + + +L+ D
Sbjct: 227 KAETWAVDFDEEKSSVAVDLESVAVHEIGHVLGLGHSSVKDAAMYPTLKPRSKKVNLNMD 286

Query: 122 DIKGLWELY 126
           D+ G+  LY
Sbjct: 287 DVVGVQSLY 295

[Close]

BLAST of MELO3C021498 vs. TrEMBL
Match: A0A0A0KS15_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G632090 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 2.8e-63
Identity = 112/130 (86.15%), Postives = 123/130 (94.62%), Query Frame = 1


Query: 2   AFEIWYGRSRFNFTEVNENKGGNIRTSFERGVHGDYHPLTNDTKTLAHTFAPTDGRFHFN 61
           AFEIWYGRSRFNFTEV+EN+GGNIR SFERGVHGDYHP T ++KTLAHTFAP DGRFHFN
Sbjct: 184 AFEIWYGRSRFNFTEVSENEGGNIRISFERGVHGDYHPFTKNSKTLAHTFAPIDGRFHFN 243

Query: 62  ADKPFSVEATYGAYHLKTMALHELGHAFGLAHSPSEDSIVFPTVPTNLEKDLDTDDIKGL 121
           ADKPFSV+ TY AYHL+T+ALHELGHAFGLAHSPSED+I+FPT+PTNLEKDLD DDI+GL
Sbjct: 244 ADKPFSVDVTYNAYHLRTVALHELGHAFGLAHSPSEDAIMFPTIPTNLEKDLDMDDIEGL 303

Query: 122 WELYDGFGVA 132
           WELYDGFGVA
Sbjct: 304 WELYDGFGVA 313

[Close]

BLAST of MELO3C021498 vs. TrEMBL
Match: A0A0A0KX75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G632100 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 4.6e-34
Identity = 70/129 (54.26%), Postives = 89/129 (68.99%), Query Frame = 1


Query: 2   AFEIWYGRSRFNFTEVNENKGGNIRTSFERGVHGDYHPLTNDTKTLAHTFAPTDGRFHFN 61
           AF  WY RSRF FTEV E +  +I+ SFE G HGD HP       LAH F PTDGR HFN
Sbjct: 184 AFLAWYERSRFFFTEVPEGEESDIKISFEVGDHGDGHPFR--VGVLAHAFTPTDGRLHFN 243

Query: 62  ADKPFSVEATYGAYHLKTMALHELGHAFGLAHSPSEDSIVFPTVPTNLEKDLDTDDIKGL 121
            D+PFS E   G YH++++ALHELGH+ GLAH+   D+I++PT+P N  K +++DD+ GL
Sbjct: 244 GDEPFSSEVAEGKYHVRSVALHELGHSLGLAHTEILDAIMYPTLPPNFAKSINSDDVNGL 303

Query: 122 WELYDGFGV 131
           W LYD F +
Sbjct: 304 WALYDNFHI 310

[Close]

BLAST of MELO3C021498 vs. TrEMBL
Match: M5X9G2_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016355mg PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 6.7e-25
Identity = 55/124 (44.35%), Postives = 79/124 (63.71%), Query Frame = 1


Query: 2   AFEIWYGRSRFNFTEVNENKGGNIRTSFERGVHGDYHPLTNDTKTLAHTFAPTDGRFHFN 61
           AF  W   ++F F++   N+  ++  SF R  HGD HP       LAH+FAP DGRFH++
Sbjct: 127 AFNTWAAHTQFKFSQARRNQKPDLTVSFHRRSHGDGHPFDGPGGILAHSFAPKDGRFHYD 186

Query: 62  ADKPFSVEATYGAYHLKTMALHELGHAFGLAHSPSEDSIVFPTVPTNLEKDLDTDDIKGL 121
           AD+ +SV    GA+HL+T+ALHE+GH  GL HS    +I++PT+ +   K L+ DDI+G+
Sbjct: 187 ADEKWSVGVVRGAFHLETVALHEIGHLLGLGHSSVRRAIMYPTISSGETKGLNRDDIQGI 246

Query: 122 WELY 126
             LY
Sbjct: 247 KALY 250

[Close]

BLAST of MELO3C021498 vs. TrEMBL
Match: A0A0D2PWZ0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G258900 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 8.7e-25
Identity = 58/125 (46.40%), Postives = 77/125 (61.60%), Query Frame = 1


Query: 2   AFEIWYGRSRFNFTEVNENKGGNIRTSFERGVHGDYHPLTNDTKTLAHTFAPTDGRFHFN 61
           AF+ W   + F F+   +    +I+ SFE G HGD  P      TLAH FAPTDGRFH++
Sbjct: 182 AFQTWSENTHFRFSMTEDYVNADIKVSFESGDHGDGSPFDGPNGTLAHAFAPTDGRFHYD 241

Query: 62  ADKPFSVEATYGAYHLKTMALHELGHAFGLAHSPSEDSIVFPTVPTNLEKDLDTDDIKGL 121
           AD+ +SV     AYHL+T+ALHE+GH  GL HS  E +I++PT      K L  DDI+G+
Sbjct: 242 ADESWSVTPDPSAYHLETLALHEIGHLLGLDHSSIEAAIMYPTFTLGESKGLHEDDIQGI 301

Query: 122 WELYD 127
             LY+
Sbjct: 302 KALYN 306

[Close]

BLAST of MELO3C021498 vs. TrEMBL
Match: B9RUG6_RICCO (Metalloendoproteinase 1, putative OS=Ricinus communis GN=RCOM_0852690 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-24
Identity = 55/125 (44.00%), Postives = 79/125 (63.20%), Query Frame = 1


Query: 2   AFEIWYGRSRFNFTEVNENKGGNIRTSFERGVHGDYHPLTNDTKTLAHTFAPTDGRFHFN 61
           AF+ W   + F FT V + +  +I   F RG HGD  P      TLAH FAP DGRFH++
Sbjct: 186 AFQTWAANTHFRFTRVQDYRAADITIGFHRGDHGDGSPFDGRGGTLAHAFAPQDGRFHYD 245

Query: 62  ADKPFSVEATYGAYHLKTMALHELGHAFGLAHSPSEDSIVFPTVPTNLEKDLDTDDIKGL 121
            D+ ++V AT GA+ ++T+ALHE+GH  GL HS  E +I+ P++ +   K L +DDI+G+
Sbjct: 246 GDEHWAVGATQGAFDVETVALHEIGHLLGLGHSSVEGAIMHPSIQSGATKGLHSDDIQGI 305

Query: 122 WELYD 127
             LY+
Sbjct: 306 RALYN 310

[Close]

BLAST of MELO3C021498 vs. TAIR10
Match: AT1G70170.1 (AT1G70170.1 matrix metalloproteinase)

HSP 1 Score: 90.5 bits (223), Expect = 8.3e-19
Identity = 50/132 (37.88%), Postives = 69/132 (52.27%), Query Frame = 1


Query: 2   AFEIWYGRSRFNFTEVNENKGGNIRTSFERGVHGDYHPLTNDTKTLAHTFAPTDGRFHFN 61
           AF  W   +  NFT        +I   F  G HGD  P      TLAH F+P  G+FH +
Sbjct: 192 AFGRWSDVTALNFTLSESFSTSDITIGFYTGDHGDGEPFDGVLGTLAHAFSPPSGKFHLD 251

Query: 62  ADKPFSVE-------ATYGAYHLKTMALHELGHAFGLAHSPSEDSIVFPTVPTNLEK-DL 121
           AD+ + V        +   A  L+++A+HE+GH  GL HS  E+SI++PT+ T   K DL
Sbjct: 252 ADENWVVSGDLDSFLSVTAAVDLESVAVHEIGHLLGLGHSSVEESIMYPTITTGKRKVDL 311

Query: 122 DTDDIKGLWELY 126
             DD++G+  LY
Sbjct: 312 TNDDVEGIQYLY 323

[Close]

BLAST of MELO3C021498 vs. TAIR10
Match: AT1G24140.1 (AT1G24140.1 Matrixin family protein)

HSP 1 Score: 90.5 bits (223), Expect = 8.3e-19
Identity = 50/133 (37.59%), Postives = 67/133 (50.38%), Query Frame = 1


Query: 2   AFEIWYGRSRFNFTEVNENKGGNIRTSFERGVHGDYHPLTNDTKTLAHTFAPTDGRFHFN 61
           AF  W   +   FT V      +I   F  G HGD  P     +TLAH F+P  G FH +
Sbjct: 196 AFTRWEEVTPLTFTRVERFSTSDISIGFYSGEHGDGEPFDGPMRTLAHAFSPPTGHFHLD 255

Query: 62  ADKPFSVEATYG--------AYHLKTMALHELGHAFGLAHSPSEDSIVFPTVPTNLEK-D 121
            ++ + V    G        A  L+++A+HE+GH  GL HS  E SI++PT+ T   K D
Sbjct: 256 GEENWIVSGEGGDGFISVSEAVDLESVAVHEIGHLLGLGHSSVEGSIMYPTIRTGRRKVD 315

Query: 122 LDTDDIKGLWELY 126
           L TDD++G+  LY
Sbjct: 316 LTTDDVEGVQYLY 328

[Close]

BLAST of MELO3C021498 vs. TAIR10
Match: AT4G16640.1 (AT4G16640.1 Matrixin family protein)

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-16
Identity = 45/130 (34.62%), Postives = 70/130 (53.85%), Query Frame = 1


Query: 2   AFEIWYGRSRFNFTEVNENKGGNIRTSFERGVHGDYHPLTNDTKTLAHTFAPTDGRFHFN 61
           AF  W      +F EV++    +++  F  G HGD  P      TLAH FAP +GR H +
Sbjct: 189 AFSQWSSVIPVSFEEVDDFTTADLKIGFYAGDHGDGLPFDGVLGTLAHAFAPENGRLHLD 248

Query: 62  ADKPFSVE-----ATYGAYHLKTMALHELGHAFGLAHSPSEDSIVFPTV-PTNLEKDLDT 121
           A + + V+     ++  A  L+++A HE+GH  GL HS  E ++++P++ P   + DL  
Sbjct: 249 AAETWIVDDDLKGSSEVAVDLESVATHEIGHLLGLGHSSQESAVMYPSLRPRTKKVDLTV 308

Query: 122 DDIKGLWELY 126
           DD+ G+ +LY
Sbjct: 309 DDVAGVLKLY 318

[Close]

BLAST of MELO3C021498 vs. TAIR10
Match: AT2G45040.1 (AT2G45040.1 Matrixin family protein)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-15
Identity = 44/129 (34.11%), Postives = 69/129 (53.49%), Query Frame = 1


Query: 2   AFEIWYGRSRFNFTEVNENKGGNIRTSFERGVHGDYHPLTNDTKTLAHTFAPTDGRFHFN 61
           AF  W      +F E  +    +I+  F  G HGD  P       LAHTF+P +GR H +
Sbjct: 167 AFGKWASVIPVSFIETEDYVIADIKIGFFNGDHGDGEPFDGVLGVLAHTFSPENGRLHLD 226

Query: 62  ADKPFSV----EATYGAYHLKTMALHELGHAFGLAHSPSEDSIVFPTV-PTNLEKDLDTD 121
             + ++V    E +  A  L+++A+HE+GH  GL HS  +D+ ++PT+ P + + +L+ D
Sbjct: 227 KAETWAVDFDEEKSSVAVDLESVAVHEIGHVLGLGHSSVKDAAMYPTLKPRSKKVNLNMD 286

Query: 122 DIKGLWELY 126
           D+ G+  LY
Sbjct: 287 DVVGVQSLY 295

[Close]

BLAST of MELO3C021498 vs. TAIR10
Match: AT1G59970.1 (AT1G59970.1 Matrixin family protein)

HSP 1 Score: 74.7 bits (182), Expect = 4.7e-14
Identity = 45/136 (33.09%), Postives = 61/136 (44.85%), Query Frame = 1


Query: 2   AFEIWYGRSRFNFTEVNENKGGNIRTSFERGVHGDYHPLTNDTKTLAHTFAPTDGRFHFN 61
           AF  W   +  NFT        +I   F  G HGD  P      TLAH  +P  G  H +
Sbjct: 180 AFTRWAEVTPLNFTRSESILRADIVIGFFSGEHGDGEPFDGAMGTLAHASSPPTGMLHLD 239

Query: 62  ADKPFSVE---------ATYGAYHLKTMALHELGHAFGLAHSPSEDSIVFPTVPTNLEK- 121
            D+ + +                 L+++A+HE+GH  GL HS  ED+I+FP +     K 
Sbjct: 240 GDEDWLISNGEISRRILPVTTVVDLESVAVHEIGHLLGLGHSSVEDAIMFPAISGGDRKV 299

Query: 122 DLDTDDIKGLWELYDG 128
           +L  DDI+G+  LY G
Sbjct: 300 ELAKDDIEGIQHLYGG 315

[Close]

BLAST of MELO3C021498 vs. NCBI nr
Match: gi|449449423|ref|XP_004142464.1| (PREDICTED: metalloendoproteinase 1-like [Cucumis sativus])

HSP 1 Score: 249.2 bits (635), Expect = 4.0e-63
Identity = 112/130 (86.15%), Postives = 123/130 (94.62%), Query Frame = 1


Query: 2   AFEIWYGRSRFNFTEVNENKGGNIRTSFERGVHGDYHPLTNDTKTLAHTFAPTDGRFHFN 61
           AFEIWYGRSRFNFTEV+EN+GGNIR SFERGVHGDYHP T ++KTLAHTFAP DGRFHFN
Sbjct: 184 AFEIWYGRSRFNFTEVSENEGGNIRISFERGVHGDYHPFTKNSKTLAHTFAPIDGRFHFN 243

Query: 62  ADKPFSVEATYGAYHLKTMALHELGHAFGLAHSPSEDSIVFPTVPTNLEKDLDTDDIKGL 121
           ADKPFSV+ TY AYHL+T+ALHELGHAFGLAHSPSED+I+FPT+PTNLEKDLD DDI+GL
Sbjct: 244 ADKPFSVDVTYNAYHLRTVALHELGHAFGLAHSPSEDAIMFPTIPTNLEKDLDMDDIEGL 303

Query: 122 WELYDGFGVA 132
           WELYDGFGVA
Sbjct: 304 WELYDGFGVA 313

[Close]

BLAST of MELO3C021498 vs. NCBI nr
Match: gi|700197234|gb|KGN52411.1| (hypothetical protein Csa_5G632100 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 6.6e-34
Identity = 70/129 (54.26%), Postives = 89/129 (68.99%), Query Frame = 1


Query: 2   AFEIWYGRSRFNFTEVNENKGGNIRTSFERGVHGDYHPLTNDTKTLAHTFAPTDGRFHFN 61
           AF  WY RSRF FTEV E +  +I+ SFE G HGD HP       LAH F PTDGR HFN
Sbjct: 184 AFLAWYERSRFFFTEVPEGEESDIKISFEVGDHGDGHPFR--VGVLAHAFTPTDGRLHFN 243

Query: 62  ADKPFSVEATYGAYHLKTMALHELGHAFGLAHSPSEDSIVFPTVPTNLEKDLDTDDIKGL 121
            D+PFS E   G YH++++ALHELGH+ GLAH+   D+I++PT+P N  K +++DD+ GL
Sbjct: 244 GDEPFSSEVAEGKYHVRSVALHELGHSLGLAHTEILDAIMYPTLPPNFAKSINSDDVNGL 303

Query: 122 WELYDGFGV 131
           W LYD F +
Sbjct: 304 WALYDNFHI 310

[Close]

BLAST of MELO3C021498 vs. NCBI nr
Match: gi|778708743|ref|XP_011656274.1| (PREDICTED: metalloendoproteinase 1-like [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 6.6e-34
Identity = 70/129 (54.26%), Postives = 89/129 (68.99%), Query Frame = 1


Query: 2   AFEIWYGRSRFNFTEVNENKGGNIRTSFERGVHGDYHPLTNDTKTLAHTFAPTDGRFHFN 61
           AF  WY RSRF FTEV E +  +I+ SFE G HGD HP       LAH F PTDGR HFN
Sbjct: 68  AFLAWYERSRFFFTEVPEGEESDIKISFEVGDHGDGHPFR--VGVLAHAFTPTDGRLHFN 127

Query: 62  ADKPFSVEATYGAYHLKTMALHELGHAFGLAHSPSEDSIVFPTVPTNLEKDLDTDDIKGL 121
            D+PFS E   G YH++++ALHELGH+ GLAH+   D+I++PT+P N  K +++DD+ GL
Sbjct: 128 GDEPFSSEVAEGKYHVRSVALHELGHSLGLAHTEILDAIMYPTLPPNFAKSINSDDVNGL 187

Query: 122 WELYDGFGV 131
           W LYD F +
Sbjct: 188 WALYDNFHI 194

[Close]

BLAST of MELO3C021498 vs. NCBI nr
Match: gi|659118021|ref|XP_008458908.1| (PREDICTED: metalloendoproteinase 1-like [Cucumis melo])

HSP 1 Score: 136.3 bits (342), Expect = 3.8e-29
Identity = 64/124 (51.61%), Postives = 82/124 (66.13%), Query Frame = 1


Query: 2   AFEIWYGRSRFNFTEVNENKGGNIRTSFERGVHGDYHPLTNDTKTLAHTFAPTDGRFHFN 61
           AF +W+ RSRF FT V+E +  +I  SFE G HGD HP       LAH F+P DGR HFN
Sbjct: 181 AFMLWFLRSRFCFTYVSEGQKSDITISFEVGDHGDGHPFKGGV--LAHAFSPEDGRLHFN 240

Query: 62  ADKPFSVEATYGAYHLKTMALHELGHAFGLAHSPSEDSIVFPTVPTNLEKDLDTDDIKGL 121
            DK FS +   G YH++T+A HELGH+ GLAH+  E +I++PT+P+N  K L  DD+ GL
Sbjct: 241 GDKSFSSDLEEGKYHIRTVAAHELGHSLGLAHTNIEAAIMYPTLPSNFSKILSQDDVDGL 300

Query: 122 WELY 126
           W  Y
Sbjct: 301 WNFY 302

[Close]

BLAST of MELO3C021498 vs. NCBI nr
Match: gi|1009124722|ref|XP_015879223.1| (PREDICTED: metalloendoproteinase 3-MMP-like [Ziziphus jujuba])

HSP 1 Score: 127.5 bits (319), Expect = 1.7e-26
Identity = 61/125 (48.80%), Postives = 83/125 (66.40%), Query Frame = 1


Query: 2   AFEIWYGRSRFNFTEVNEN-KGGNIRTSFERGVHGDYHPLTNDTKTLAHTFAPTDGRFHF 61
           AF  W   + F FT V +  K  +I  SF RG HGD  P   +  TLAH +APTDGRFH+
Sbjct: 179 AFRTWAHNTHFRFTHVQDKRKKADITISFNRGNHGDGVPFDGEGGTLAHAYAPTDGRFHY 238

Query: 62  NADKPFSVEATYGAYHLKTMALHELGHAFGLAHSPSEDSIVFPTVPTNLEKDLDTDDIKG 121
           +AD+P+ V A++GAY L+T+ALHE+GH  GL HS  E +I++PT+ + + K L  DDI+G
Sbjct: 239 DADEPWCVGASHGAYDLETVALHEIGHLLGLLHSSVEGAIMYPTIDSGVTKGLHRDDIQG 298

Query: 122 LWELY 126
           +  LY
Sbjct: 299 IKALY 303

The following BLAST results are available for this feature:

BLAST of MELO3C021498 vs. Swiss-Prot


Match Name	E-value	Identity	Description
2MMP_ARATH	1.5e-17	37.88	Metalloendoproteinase 2-MMP OS=Arabidopsis thaliana GN=2MMP PE=1 SV=1	[more]
3MMP_ARATH	1.5e-17	37.59	Metalloendoproteinase 3-MMP OS=Arabidopsis thaliana GN=3MMP PE=1 SV=1	[more]
MEP1_SOYBN	1.1e-15	35.88	Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2	[more]
1MMP_ARATH	2.4e-15	34.62	Metalloendoproteinase 1-MMP OS=Arabidopsis thaliana GN=1MMP PE=1 SV=1	[more]
4MMP_ARATH	2.6e-14	34.11	Metalloendoproteinase 4-MMP OS=Arabidopsis thaliana GN=4MMP PE=1 SV=1	[more]

BLAST of MELO3C021498 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KS15_CUCSA	2.8e-63	86.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G632090 PE=3 SV=1	[more]
A0A0A0KX75_CUCSA	4.6e-34	54.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G632100 PE=3 SV=1	[more]
M5X9G2_PRUPE	6.7e-25	44.35	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016355mg PE=3 S...	[more]
A0A0D2PWZ0_GOSRA	8.7e-25	46.40	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G258900 PE=3 SV=1	[more]
B9RUG6_RICCO	1.9e-24	44.00	Metalloendoproteinase 1, putative OS=Ricinus communis GN=RCOM_0852690 PE=3 SV=1	[more]

BLAST of MELO3C021498 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G70170.1	8.3e-19	37.88	matrix metalloproteinase	[more]
AT1G24140.1	8.3e-19	37.59	Matrixin family protein	[more]
AT4G16640.1	1.3e-16	34.62	Matrixin family protein	[more]
AT2G45040.1	1.5e-15	34.11	Matrixin family protein	[more]
AT1G59970.1	4.7e-14	33.09	Matrixin family protein	[more]

BLAST of MELO3C021498 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449449423\|ref\|XP_004142464.1\|	4.0e-63	86.15	PREDICTED: metalloendoproteinase 1-like [Cucumis sativus]	[more]
gi\|700197234\|gb\|KGN52411.1\|	6.6e-34	54.26	hypothetical protein Csa_5G632100 [Cucumis sativus]	[more]
gi\|778708743\|ref\|XP_011656274.1\|	6.6e-34	54.26	PREDICTED: metalloendoproteinase 1-like [Cucumis sativus]	[more]
gi\|659118021\|ref\|XP_008458908.1\|	3.8e-29	51.61	PREDICTED: metalloendoproteinase 1-like [Cucumis melo]	[more]
gi\|1009124722\|ref\|XP_015879223.1\|	1.7e-26	48.80	PREDICTED: metalloendoproteinase 3-MMP-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001818	Pept_M10_metallopeptidase
IPR021190	Pept_M10A
IPR024079	MetalloPept_cat_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0004222	metalloendopeptidase activity
GO:0008270	zinc ion binding
GO:0008237	metallopeptidase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

Vocabulary: **Cellular Component**
Term	Definition
GO:0031012	extracellular matrix

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0031012	extracellular matrix
molecular_function	GO:0004222	metalloendopeptidase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0008237	metallopeptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C021498T1	MELO3C021498T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001818	Peptidase M10, metallopeptidase	PFAM	PF00413	Peptidase_M10	coord: 2..125 score: 1.2
IPR021190	Peptidase M10A	PRINTS	PR00138	MATRIXIN	coord: 113..126 score: 3.3E-17coord: 23..51 score: 3.3E-17coord: 80..105 score: 3.3
IPR024079	Metallopeptidase, catalytic domain	GENE3D	G3DSA:3.40.390.10		coord: 2..125 score: 7.4
None	No IPR available	PANTHER	PTHR10201	MATRIX METALLOPROTEINASE	coord: 2..125 score: 1.3
None	No IPR available	PANTHER	PTHR10201:SF152	SUBFAMILY NOT NAMED	coord: 2..125 score: 1.3
None	No IPR available	unknown	SSF55486	Metalloproteases ("zincins"), catalytic domain	coord: 2..126 score: 7.34

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C021498	Watermelon (97103) v2	mewmbB011
MELO3C021498	Watermelon (97103) v2	mewmbB038
MELO3C021498	Melon (DHL92) v3.5.1	memeB012
MELO3C021498	Cucumber (Gy14) v1	cgymeB114
MELO3C021498	Cucumber (Gy14) v1	cgymeB265
MELO3C021498	Cucurbita maxima (Rimu)	cmameB251
MELO3C021498	Cucurbita maxima (Rimu)	cmameB634
MELO3C021498	Cucurbita moschata (Rifu)	cmomeB239
MELO3C021498	Cucurbita moschata (Rifu)	cmomeB624
MELO3C021498	Wild cucumber (PI 183967)	cpimeB000
MELO3C021498	Wild cucumber (PI 183967)	cpimeB349
MELO3C021498	Cucumber (Chinese Long) v2	cumeB005
MELO3C021498	Cucumber (Chinese Long) v2	cumeB358
MELO3C021498	Watermelon (Charleston Gray)	mewcgB002
MELO3C021498	Watermelon (97103) v1	mewmB003
MELO3C021498	Cucurbita pepo (Zucchini)	cpemeB155
MELO3C021498	Cucurbita pepo (Zucchini)	cpemeB358
MELO3C021498	Cucurbita pepo (Zucchini)	cpemeB467
MELO3C021498	Bottle gourd (USVL1VR-Ls)	lsimeB162
MELO3C021498	Bottle gourd (USVL1VR-Ls)	lsimeB163
MELO3C021498	Cucumber (Gy14) v2	cgybmeB001
MELO3C021498	Cucumber (Gy14) v2	cgybmeB299
MELO3C021498	Silver-seed gourd	carmeB0260
MELO3C021498	Silver-seed gourd	carmeB0682
MELO3C021498	Wax gourd	mewgoB022
MELO3C021498	Cucumber (Chinese Long) v3	cucmeB000
MELO3C021498	Cucumber (Chinese Long) v3	cucmeB358