MELO3C021166 (gene) Melon (DHL92) v3.5.1

NameMELO3C021166
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPol polyprotein
Locationchr11 : 28750642 .. 28750890 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCCTTGTCCTTCTTCTCGTGGATTTAAATATATTCTTCTCGTTGTGGACTTTGTTTCCAAATGGGTGGAAGCAAAAGCCACTGTTACTGATGATTCTAAAGTGGTTGCAGGTTTTTTGAAGTCTAACATCCTTAACAAGTTTGGTTTTCCACGAGCTATCATTAGTGACCAGGGTCTAAAGAAATATGGTGTTCAACACCGCATTGCCACTCCATACCATCCTCAGACAAACAGGCAGGTGTAG

mRNA sequence

ATGGGTCCTTGTCCTTCTTCTCGTGGATTTAAATATATTCTTCTCGTTGTGGACTTTGTTTCCAAATGGGTGGAAGCAAAAGCCACTGTTACTGATGATTCTAAAGTGGTTGCAGGTTTTTTGAAGTCTAACATCCTTAACAAGTTTGGTTTTCCACGAGCTATCATTAGTGACCAGGGTCTAAAGAAATATGGTGTTCAACACCGCATTGCCACTCCATACCATCCTCAGACAAACAGGCAGGTGTAG

Coding sequence (CDS)

ATGGGTCCTTGTCCTTCTTCTCGTGGATTTAAATATATTCTTCTCGTTGTGGACTTTGTTTCCAAATGGGTGGAAGCAAAAGCCACTGTTACTGATGATTCTAAAGTGGTTGCAGGTTTTTTGAAGTCTAACATCCTTAACAAGTTTGGTTTTCCACGAGCTATCATTAGTGACCAGGGTCTAAAGAAATATGGTGTTCAACACCGCATTGCCACTCCATACCATCCTCAGACAAACAGGCAGGTGTAG

Protein sequence

MGPCPSSRGFKYILLVVDFVSKWVEAKATVTDDSKVVAGFLKSNILNKFGFPRAIISDQGLKKYGVQHRIATPYHPQTNRQV*
BLAST of MELO3C021166 vs. Swiss-Prot
Match: POL_XMRV4 (Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP42) GN=gag-pol PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.2e-06
Identity = 30/89 (33.71%), Postives = 43/89 (48.31%), Query Frame = 1

Query: 5    PSSRGFKYILLVVDFVSKWVEAKATVTDDSKVVAGFLKSNILNKFGFPRAIISDQG---- 64
            P   G+KY+L+ VD  S WVEA  T  + +KVV+  L  +I  +FG P+ + SD G    
Sbjct: 1459 PGLYGYKYLLVFVDTFSGWVEAFPTKRETAKVVSKKLLEDIFPRFGMPQVLGSDNGPAFA 1518

Query: 65   -------LKKYGVQHRIATPYHPQTNRQV 83
                       G+  ++   Y PQ++ QV
Sbjct: 1519 SQVSQSVADLLGIDWKLHCAYRPQSSGQV 1547

BLAST of MELO3C021166 vs. Swiss-Prot
Match: POL_XMRV6 (Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP62) GN=gag-pol PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.2e-06
Identity = 30/89 (33.71%), Postives = 43/89 (48.31%), Query Frame = 1

Query: 5    PSSRGFKYILLVVDFVSKWVEAKATVTDDSKVVAGFLKSNILNKFGFPRAIISDQG---- 64
            P   G+KY+L+ VD  S WVEA  T  + +KVV+  L  +I  +FG P+ + SD G    
Sbjct: 1459 PGLYGYKYLLVFVDTFSGWVEAFPTKRETAKVVSKKLLEDIFPRFGMPQVLGSDNGPAFA 1518

Query: 65   -------LKKYGVQHRIATPYHPQTNRQV 83
                       G+  ++   Y PQ++ QV
Sbjct: 1519 SQVSQSVADLLGIDWKLHCAYRPQSSGQV 1547

BLAST of MELO3C021166 vs. Swiss-Prot
Match: POL_XMRV3 (Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP35) GN=gag-pol PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 8.2e-06
Identity = 30/89 (33.71%), Postives = 42/89 (47.19%), Query Frame = 1

Query: 5    PSSRGFKYILLVVDFVSKWVEAKATVTDDSKVVAGFLKSNILNKFGFPRAIISDQG---- 64
            P   G+KY+L+ VD  S WVEA  T  + +KVV   L  +I  +FG P+ + SD G    
Sbjct: 1459 PGLYGYKYLLVFVDTFSGWVEAFPTKRETAKVVTKKLLEDIFPRFGMPQVLGSDNGPAFA 1518

Query: 65   -------LKKYGVQHRIATPYHPQTNRQV 83
                       G+  ++   Y PQ++ QV
Sbjct: 1519 SQVSQSVADLLGIDWKLHCAYRPQSSGQV 1547

BLAST of MELO3C021166 vs. Swiss-Prot
Match: POL_MLVRK (Pol polyprotein (Fragment) OS=Radiation murine leukemia virus (strain Kaplan) GN=pol PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 8.2e-06
Identity = 29/89 (32.58%), Postives = 42/89 (47.19%), Query Frame = 1

Query: 5   PSSRGFKYILLVVDFVSKWVEAKATVTDDSKVVAGFLKSNILNKFGFPRAIISDQG---- 64
           P   G+KY+L+ VD  S WVEA  T  + +K+V   L   I  +FG P+ + +D G    
Sbjct: 307 PGLYGYKYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMPQVLGTDNGPAFV 366

Query: 65  -------LKKYGVQHRIATPYHPQTNRQV 83
                   K  G+  ++   Y PQ++ QV
Sbjct: 367 SQVSQSVAKLLGIDWKLHCAYRPQSSGQV 395

BLAST of MELO3C021166 vs. Swiss-Prot
Match: POL_MLVRD (Pol polyprotein OS=Radiation murine leukemia virus GN=pol PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 8.2e-06
Identity = 29/89 (32.58%), Postives = 42/89 (47.19%), Query Frame = 1

Query: 5    PSSRGFKYILLVVDFVSKWVEAKATVTDDSKVVAGFLKSNILNKFGFPRAIISDQG---- 64
            P   G+KY+L+ VD  S WVEA  T  + +K+V   L   I  +FG P+ + +D G    
Sbjct: 922  PGLYGYKYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMPQVLGTDNGPAFV 981

Query: 65   -------LKKYGVQHRIATPYHPQTNRQV 83
                    K  G+  ++   Y PQ++ QV
Sbjct: 982  SQVSQSVAKLLGIDWKLHCAYRPQSSGQV 1010

BLAST of MELO3C021166 vs. TrEMBL
Match: A0A151QZW2_CAJCA (Transposon Ty3-G Gag-Pol polyprotein (Fragment) OS=Cajanus cajan GN=KK1_043040 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.3e-23
Identity = 59/92 (64.13%), Postives = 68/92 (73.91%), Query Frame = 1

Query: 1    MGPCPSSRGFKYILLVVDFVSKWVEAKATVTDDSKVVAGFLKSNILNKFGFPRAIISDQG 60
            MGP P S GF YILL VD+VSKWVEAKAT T+D++VV  F++SNI  +FG PRAI+SDQG
Sbjct: 945  MGPFPVSFGFSYILLAVDYVSKWVEAKATRTNDARVVVDFVRSNIFCRFGVPRAIVSDQG 1004

Query: 61   -----------LKKYGVQHRIATPYHPQTNRQ 82
                       LKKYGV HRI+TPYHPQTN Q
Sbjct: 1005 THFCNRSMQALLKKYGVVHRISTPYHPQTNGQ 1036

BLAST of MELO3C021166 vs. TrEMBL
Match: A0A151UFE1_CAJCA (Retrotransposable element Tf2 OS=Cajanus cajan GN=KK1_049464 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.1e-23
Identity = 59/92 (64.13%), Postives = 68/92 (73.91%), Query Frame = 1

Query: 1   MGPCPSSRGFKYILLVVDFVSKWVEAKATVTDDSKVVAGFLKSNILNKFGFPRAIISDQG 60
           MG  P S GF YILLVVD+VSKWVEAKAT T+D++VV  F++SNI  +FG PRAI+SDQG
Sbjct: 228 MGSFPVSFGFSYILLVVDYVSKWVEAKATRTNDAQVVVDFVRSNIFCRFGVPRAIVSDQG 287

Query: 61  -----------LKKYGVQHRIATPYHPQTNRQ 82
                      LKKYGV HRI+TPYHPQTN Q
Sbjct: 288 THFCNRSMQALLKKYGVVHRISTPYHPQTNGQ 319

BLAST of MELO3C021166 vs. TrEMBL
Match: A0A151UEQ4_CAJCA (Pro-Pol polyprotein OS=Cajanus cajan GN=KK1_049505 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.7e-23
Identity = 57/92 (61.96%), Postives = 69/92 (75.00%), Query Frame = 1

Query: 1   MGPCPSSRGFKYILLVVDFVSKWVEAKATVTDDSKVVAGFLKSNILNKFGFPRAIISDQG 60
           MGP P S GF YILLVVD+VSKWVEAKAT T+D++VV  F++S++  +FG PRAI+SDQG
Sbjct: 82  MGPFPVSFGFSYILLVVDYVSKWVEAKATRTNDAQVVVDFVRSHLFCRFGVPRAIVSDQG 141

Query: 61  -----------LKKYGVQHRIATPYHPQTNRQ 82
                      LKKYGV H+I+TPYHPQTN Q
Sbjct: 142 THFCNKSMQALLKKYGVVHKISTPYHPQTNGQ 173

BLAST of MELO3C021166 vs. TrEMBL
Match: X2JK86_SOYBN (Integrase OS=Glycine max PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.5e-22
Identity = 56/92 (60.87%), Postives = 68/92 (73.91%), Query Frame = 1

Query: 1   MGPCPSSRGFKYILLVVDFVSKWVEAKATVTDDSKVVAGFLKSNILNKFGFPRAIISDQG 60
           MGP P S G+ YILL VD+VSKWVEAK T T+D+KVVA F++SN+  +FG P+AI+SDQG
Sbjct: 20  MGPFPVSFGYVYILLAVDYVSKWVEAKLTRTNDAKVVADFVRSNLFCRFGVPKAIVSDQG 79

Query: 61  -----------LKKYGVQHRIATPYHPQTNRQ 82
                      LKKYGV HR++TPYHPQTN Q
Sbjct: 80  THFCNRTMHALLKKYGVVHRVSTPYHPQTNGQ 111

BLAST of MELO3C021166 vs. TrEMBL
Match: A0A151QTC2_CAJCA (Pol polyprotein (Fragment) OS=Cajanus cajan GN=KK1_045623 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.5e-22
Identity = 56/88 (63.64%), Postives = 66/88 (75.00%), Query Frame = 1

Query: 5   PSSRGFKYILLVVDFVSKWVEAKATVTDDSKVVAGFLKSNILNKFGFPRAIISDQG---- 64
           P S GF YILL VD+VSKWVEAKAT+T+DS+VV  F++SNI  +FG PRAI+SDQG    
Sbjct: 98  PVSFGFSYILLAVDYVSKWVEAKATITNDSRVVVDFVRSNIFCRFGVPRAIVSDQGTHFC 157

Query: 65  -------LKKYGVQHRIATPYHPQTNRQ 82
                  LKKYGV HR++TPYHPQTN Q
Sbjct: 158 NRSMHALLKKYGVVHRLSTPYHPQTNGQ 185

BLAST of MELO3C021166 vs. NCBI nr
Match: gi|720093695|ref|XP_010246129.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104589483 [Nelumbo nucifera])

HSP 1 Score: 122.5 bits (306), Expect = 3.5e-25
Identity = 63/92 (68.48%), Postives = 68/92 (73.91%), Query Frame = 1

Query: 1   MGPCPSSRGFKYILLVVDFVSKWVEAKATVTDDSKVVAGFLKSNILNKFGFPRAIISDQG 60
           MGP P S GF YILLVVD+VSKWVEAKAT TDDSK V GF+KSNI N+FG PRAIISDQG
Sbjct: 406 MGPFPPSCGFAYILLVVDYVSKWVEAKATNTDDSKCVVGFIKSNIFNRFGIPRAIISDQG 465

Query: 61  -----------LKKYGVQHRIATPYHPQTNRQ 82
                      L++YGV HRIAT Y PQTN Q
Sbjct: 466 THFYNRAVEVLLRRYGVHHRIATAYRPQTNGQ 497

BLAST of MELO3C021166 vs. NCBI nr
Match: gi|720093695|ref|XP_010246129.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104589483 [Nelumbo nucifera])

HSP 1 Score: 104.4 bits (259), Expect = 9.9e-20
Identity = 53/92 (57.61%), Postives = 67/92 (72.83%), Query Frame = 1

Query: 1    MGPCPSSRGFKYILLVVDFVSKWVEAKATVTDDSKVVAGFLKSNILNKFGFPRAIISDQG 60
            MGP   S G+ YILLVV++VSKWVEAKAT TDDS VV GF+KSNI ++FG PRA+ISD+G
Sbjct: 1678 MGPFLVSFGYVYILLVVNYVSKWVEAKATRTDDSMVVIGFIKSNIFSRFGIPRALISDRG 1737

Query: 61   -----------LKKYGVQHRIATPYHPQTNRQ 82
                       L++Y V H+++T YHPQT+ Q
Sbjct: 1738 THFCNRTMEALLRQYHVTHKVSTAYHPQTSGQ 1769


HSP 2 Score: 116.7 bits (291), Expect = 1.9e-23
Identity = 59/92 (64.13%), Postives = 68/92 (73.91%), Query Frame = 1

Query: 1    MGPCPSSRGFKYILLVVDFVSKWVEAKATVTDDSKVVAGFLKSNILNKFGFPRAIISDQG 60
            MGP P S GF YILL VD+VSKWVEAKAT T+D++VV  F++SNI  +FG PRAI+SDQG
Sbjct: 945  MGPFPVSFGFSYILLAVDYVSKWVEAKATRTNDARVVVDFVRSNIFCRFGVPRAIVSDQG 1004

Query: 61   -----------LKKYGVQHRIATPYHPQTNRQ 82
                       LKKYGV HRI+TPYHPQTN Q
Sbjct: 1005 THFCNRSMQALLKKYGVVHRISTPYHPQTNGQ 1036

BLAST of MELO3C021166 vs. NCBI nr
Match: gi|658046860|ref|XP_008359095.1| (PREDICTED: uncharacterized protein LOC103422814 [Malus domestica])

HSP 1 Score: 116.7 bits (291), Expect = 1.9e-23
Identity = 58/92 (63.04%), Postives = 68/92 (73.91%), Query Frame = 1

Query: 1   MGPCPSSRGFKYILLVVDFVSKWVEAKATVTDDSKVVAGFLKSNILNKFGFPRAIISDQG 60
           MGP PSS GF YILL VD+VSKWVEA+AT T+DSKVVA F+K+NI  +FG PR +ISD G
Sbjct: 182 MGPFPSSHGFVYILLAVDYVSKWVEARATRTNDSKVVADFVKTNIFARFGMPRVLISDXG 241

Query: 61  -----------LKKYGVQHRIATPYHPQTNRQ 82
                      LKKYGV H++ATPYHPQT+ Q
Sbjct: 242 SHFCNRTIEALLKKYGVTHKVATPYHPQTSGQ 273

BLAST of MELO3C021166 vs. NCBI nr
Match: gi|657998510|ref|XP_008391660.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103453854 [Malus domestica])

HSP 1 Score: 115.9 bits (289), Expect = 3.3e-23
Identity = 58/92 (63.04%), Postives = 68/92 (73.91%), Query Frame = 1

Query: 1    MGPCPSSRGFKYILLVVDFVSKWVEAKATVTDDSKVVAGFLKSNILNKFGFPRAIISDQG 60
            MGP PSS GF YILL VD+VSKWVEAKAT T+DSKVV+ F+KSNI  +FG PRAIISD G
Sbjct: 1037 MGPFPSSNGFLYILLAVDYVSKWVEAKATKTNDSKVVSDFIKSNIFARFGIPRAIISDGG 1096

Query: 61   -----------LKKYGVQHRIATPYHPQTNRQ 82
                       L+KY V H+++TPYHPQT+ Q
Sbjct: 1097 SHFCNQTFEALLRKYNVTHKVSTPYHPQTSGQ 1128

BLAST of MELO3C021166 vs. NCBI nr
Match: gi|658031872|ref|XP_008351425.1| (PREDICTED: uncharacterized protein LOC103414836 [Malus domestica])

HSP 1 Score: 115.5 bits (288), Expect = 4.3e-23
Identity = 57/92 (61.96%), Postives = 68/92 (73.91%), Query Frame = 1

Query: 1   MGPCPSSRGFKYILLVVDFVSKWVEAKATVTDDSKVVAGFLKSNILNKFGFPRAIISDQG 60
           MGP PSS GF YILL +D+VSKWVEAKAT T+DSKVVA F+K+NI ++FG PR +ISD G
Sbjct: 861 MGPFPSSFGFTYILLAIDYVSKWVEAKATRTNDSKVVANFVKTNIFSRFGMPRVLISDGG 920

Query: 61  -----------LKKYGVQHRIATPYHPQTNRQ 82
                      LKKY V H+++TPYHPQTN Q
Sbjct: 921 SHFCNRTIEALLKKYHVTHKVSTPYHPQTNGQ 952

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
POL_XMRV46.2e-0633.71Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP42) GN=gag-pol P... [more]
POL_XMRV66.2e-0633.71Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP62) GN=gag-pol P... [more]
POL_XMRV38.2e-0633.71Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP35) GN=gag-pol P... [more]
POL_MLVRK8.2e-0632.58Pol polyprotein (Fragment) OS=Radiation murine leukemia virus (strain Kaplan) GN... [more]
POL_MLVRD8.2e-0632.58Pol polyprotein OS=Radiation murine leukemia virus GN=pol PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A151QZW2_CAJCA1.3e-2364.13Transposon Ty3-G Gag-Pol polyprotein (Fragment) OS=Cajanus cajan GN=KK1_043040 P... [more]
A0A151UFE1_CAJCA5.1e-2364.13Retrotransposable element Tf2 OS=Cajanus cajan GN=KK1_049464 PE=4 SV=1[more]
A0A151UEQ4_CAJCA8.7e-2361.96Pro-Pol polyprotein OS=Cajanus cajan GN=KK1_049505 PE=4 SV=1[more]
X2JK86_SOYBN1.5e-2260.87Integrase OS=Glycine max PE=4 SV=1[more]
A0A151QTC2_CAJCA1.5e-2263.64Pol polyprotein (Fragment) OS=Cajanus cajan GN=KK1_045623 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|720093695|ref|XP_010246129.1|3.5e-2568.48PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104589483 [Nelumbo nu... [more]
gi|720093695|ref|XP_010246129.1|9.9e-2057.61PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104589483 [Nelumbo nu... [more]
gi|658046860|ref|XP_008359095.1|1.9e-2363.04PREDICTED: uncharacterized protein LOC103422814 [Malus domestica][more]
gi|657998510|ref|XP_008391660.1|3.3e-2363.04PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103453854 [Malus dome... [more]
gi|658031872|ref|XP_008351425.1|4.3e-2361.96PREDICTED: uncharacterized protein LOC103414836 [Malus domestica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C021166T1MELO3C021166T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 2..79
score: 5.
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 3..82
score: 6.6
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 2..82
score: 5.94
NoneNo IPR availablePANTHERPTHR24559FAMILY NOT NAMEDcoord: 5..82
score: 8.4