MELO3C021112 (gene) Melon (DHL92) v3.5.1

NameMELO3C021112
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Locationchr1 : 26524778 .. 26525014 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAGAGCGGGTAGAGTGAGCTTTGTCACATGGAAAAAGTTCCGCAAAGAGTTTAAAGACAAGTTTTATCCTCGCTTCTTTTGTGATGCAAAAAGAAAAGAATTCATGAATCTAGTTCAAGGCGAAATGACAGACGCAAAATCTGAGAAACGATTTATCGAATTGGTTAAATATGCTTTAGCCTTCGTAATTGATGAAGCTGATAAGTTCAAGTGGTTTGAAGAAGCCTTGTAA

mRNA sequence

ATGGCGAGAGCGGGTAGAGTGAGCTTTGTCACATGGAAAAAGTTCCGCAAAGAGTTTAAAGACAAGTTTTATCCTCGCTTCTTTTGTGATGCAAAAAGAAAAGAATTCATGAATCTAGTTCAAGGCGAAATGACAGACGCAAAATCTGAGAAACGATTTATCGAATTGGTTAAATATGCTTTAGCCTTCGTAATTGATGAAGCTGATAAGTTCAAGTGGTTTGAAGAAGCCTTGTAA

Coding sequence (CDS)

ATGGCGAGAGCGGGTAGAGTGAGCTTTGTCACATGGAAAAAGTTCCGCAAAGAGTTTAAAGACAAGTTTTATCCTCGCTTCTTTTGTGATGCAAAAAGAAAAGAATTCATGAATCTAGTTCAAGGCGAAATGACAGACGCAAAATCTGAGAAACGATTTATCGAATTGGTTAAATATGCTTTAGCCTTCGTAATTGATGAAGCTGATAAGTTCAAGTGGTTTGAAGAAGCCTTGTAA

Protein sequence

MARAGRVSFVTWKKFRKEFKDKFYPRFFCDAKRKEFMNLVQGEMTDAKSEKRFIELVKYALAFVIDEADKFKWFEEAL*
BLAST of MELO3C021112 vs. TrEMBL
Match: A0A0B0NVE0_GOSAR (1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2 OS=Gossypium arboreum GN=F383_22567 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-06
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = 1

Query: 10  VTWKKFRKEFKDKFYPRFFCDAKRKEFMNLVQGEMTDAKSEKRFIELVKYALAFVIDEAD 69
           VTW+ F+  FK K+    + DA+RKEF+NL+QG  T A+ E  F++L +YA+  V  E  
Sbjct: 188 VTWELFKTAFKGKYIGASYVDARRKEFLNLLQGGKTVAEYEAEFLKLSRYAVGIVATEYK 247

Query: 70  KFKWFEEAL 79
           +   FE+ L
Sbjct: 248 RSVHFEDGL 256

BLAST of MELO3C021112 vs. TrEMBL
Match: M5X4P9_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025968mg PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-06
Identity = 31/71 (43.66%), Postives = 41/71 (57.75%), Query Frame = 1

Query: 8   SFVTWKKFRKEFKDKFYPRFFCDAKRKEFMNLVQGEMTDAKSEKRFIELVKYALAFVIDE 67
           S +TW  FR  F ++FYP  + + K +EF+ L QG MT A+ EK+F EL KY    V DE
Sbjct: 156 SAITWPVFRTAFVEQFYPLAYQNMKMEEFLQLEQGIMTVAEYEKKFNELSKYCAPLVADE 215

Query: 68  ADKFKWFEEAL 79
             K + F   L
Sbjct: 216 RKKCQLFTRGL 226

BLAST of MELO3C021112 vs. TrEMBL
Match: M5XKU8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021588mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.2e-06
Identity = 29/69 (42.03%), Postives = 42/69 (60.87%), Query Frame = 1

Query: 10  VTWKKFRKEFKDKFYPRFFCDAKRKEFMNLVQGEMTDAKSEKRFIELVKYALAFVIDEAD 69
           +TW+ FR  F  ++YP+ + + K +EF+ L QG MT  + EKRF +L KY L  V DE+ 
Sbjct: 105 ITWQVFRAAFDSQYYPQAYQNLKMQEFLQLEQGMMTVLEYEKRFHDLSKYCLPLVEDESK 164

Query: 70  KFKWFEEAL 79
           K + F   L
Sbjct: 165 KCQLFTMGL 173

BLAST of MELO3C021112 vs. TrEMBL
Match: M5VT03_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb020037mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.2e-06
Identity = 29/69 (42.03%), Postives = 42/69 (60.87%), Query Frame = 1

Query: 10  VTWKKFRKEFKDKFYPRFFCDAKRKEFMNLVQGEMTDAKSEKRFIELVKYALAFVIDEAD 69
           +TW+ FR  F  ++YP+ + + K +EF+ L QG MT  + EKRF +L KY L  V DE+ 
Sbjct: 159 ITWQVFRAAFDSQYYPQAYQNLKMQEFLQLEQGMMTVLEYEKRFHDLSKYCLPLVKDESK 218

Query: 70  KFKWFEEAL 79
           K + F   L
Sbjct: 219 KCQLFTMGL 227

BLAST of MELO3C021112 vs. TrEMBL
Match: M5WQG1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa023432mg PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.2e-06
Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 1

Query: 8   SFVTWKKFRKEFKDKFYPRFFCDAKRKEFMNLVQGEMTDAKSEKRFIELVKYALAFVIDE 67
           S ++W  FR  F  ++YP+ + + K +EF+ L QG MT  + EK+F EL KY +  V DE
Sbjct: 98  SVISWPVFRAVFNSQYYPQAYQNLKMQEFLQLDQGLMTVLEYEKKFNELSKYCIPLVEDE 157

Query: 68  ADKFKWFEEAL 79
           + K + F + L
Sbjct: 158 SKKCQLFTKGL 168

BLAST of MELO3C021112 vs. NCBI nr
Match: gi|659098594|ref|XP_008450217.1| (PREDICTED: uncharacterized protein LOC103491879 [Cucumis melo])

HSP 1 Score: 98.6 bits (244), Expect = 5.2e-18
Identity = 46/77 (59.74%), Postives = 57/77 (74.03%), Query Frame = 1

Query: 2   ARAGRVSFVTWKKFRKEFKDKFYPRFFCDAKRKEFMNLVQGEMTDAKSEKRFIELVKYAL 61
           AR G V+ V W+ FRK F++KFYP  F D KRKEF+NL QG MT A+ E +FIELVKY +
Sbjct: 116 ARVGGVNIVMWEGFRKGFQEKFYPHLFVDTKRKEFLNLKQGNMTIAEYENKFIELVKYVI 175

Query: 62  AFVIDEADKFKWFEEAL 79
           +F++DE DK K FEE L
Sbjct: 176 SFIMDEEDKCKCFEEGL 192

BLAST of MELO3C021112 vs. NCBI nr
Match: gi|659111571|ref|XP_008455797.1| (PREDICTED: uncharacterized protein LOC103495893 [Cucumis melo])

HSP 1 Score: 93.6 bits (231), Expect = 1.7e-16
Identity = 45/77 (58.44%), Postives = 54/77 (70.13%), Query Frame = 1

Query: 2   ARAGRVSFVTWKKFRKEFKDKFYPRFFCDAKRKEFMNLVQGEMTDAKSEKRFIELVKYAL 61
           AR G   +V W++FRK  +DKFYP  FCD KRK+FM+L+QG+MT  + EK F EL KY L
Sbjct: 54  ARVGGTKYVMWEEFRKALRDKFYPCSFCDEKRKKFMSLLQGDMTVIEYEKIFTELAKYTL 113

Query: 62  AFVIDEADKFKWFEEAL 79
            FVIDE DK K F E L
Sbjct: 114 DFVIDEVDKCKQFGEGL 130

BLAST of MELO3C021112 vs. NCBI nr
Match: gi|659131051|ref|XP_008465483.1| (PREDICTED: uncharacterized protein LOC103503101 [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 7.8e-14
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 1

Query: 7   VSFVTWKKFRKEFKDKFYPRFFCDAKRKEFMNLVQGEMTDAKSEKRFIELVKYALAFVID 66
           V FVTW+ F++EF+ KFYP  F D KR+EF+ LVQG+ T A+  K+F+EL +YA+ F+++
Sbjct: 53  VEFVTWRYFQREFQKKFYPHLFVDEKRREFLRLVQGDETVAQYGKKFMELARYAITFIMN 112

Query: 67  EADKFKWFEEAL 79
           E DK   FE+ L
Sbjct: 113 EEDKCMHFEDGL 124

BLAST of MELO3C021112 vs. NCBI nr
Match: gi|659116534|ref|XP_008458118.1| (PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo])

HSP 1 Score: 75.9 bits (185), Expect = 3.6e-11
Identity = 34/69 (49.28%), Postives = 49/69 (71.01%), Query Frame = 1

Query: 10  VTWKKFRKEFKDKFYPRFFCDAKRKEFMNLVQGEMTDAKSEKRFIELVKYALAFVIDEAD 69
           ++W +F+K F +K+YPR + DAKR EF  LV G MT A+ EK++I+L KYA + + DE D
Sbjct: 141 ISWNEFKKAFYEKYYPRSYKDAKRSEFFRLVLGSMTIAEYEKKYIKLSKYATSMIEDEID 200

Query: 70  KFKWFEEAL 79
           + K FE+ L
Sbjct: 201 RCKRFEDGL 209

BLAST of MELO3C021112 vs. NCBI nr
Match: gi|985461745|ref|XP_015388537.1| (PREDICTED: uncharacterized protein LOC107178182 [Citrus sinensis])

HSP 1 Score: 71.6 bits (174), Expect = 6.8e-10
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 1

Query: 10  VTWKKFRKEFKDKFYPRFFCDAKRKEFMNLVQGEMTDAKSEKRFIELVKYALAFVIDEAD 69
           +TW  FRKEF D ++P  + D KR EF  LVQG MT  + EK+FI+L K+A++ V DE +
Sbjct: 37  ITWAIFRKEFYDHYFPVVYQDIKRSEFPRLVQGSMTVEEYEKKFIDLSKFAISTVDDERE 96

Query: 70  KFKWFEEAL 79
           + + FEE L
Sbjct: 97  RCRQFEEGL 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0B0NVE0_GOSAR1.4e-0642.031-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2 OS=Gossypium ar... [more]
M5X4P9_PRUPE1.9e-0643.66Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025968mg PE=4 S... [more]
M5XKU8_PRUPE3.2e-0642.03Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021588mg PE=4 SV=1[more]
M5VT03_PRUPE3.2e-0642.03Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb020037mg PE=4 SV=1[more]
M5WQG1_PRUPE9.2e-0639.44Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa023432mg PE=4 S... [more]
Match NameE-valueIdentityDescription
gi|659098594|ref|XP_008450217.1|5.2e-1859.74PREDICTED: uncharacterized protein LOC103491879 [Cucumis melo][more]
gi|659111571|ref|XP_008455797.1|1.7e-1658.44PREDICTED: uncharacterized protein LOC103495893 [Cucumis melo][more]
gi|659131051|ref|XP_008465483.1|7.8e-1451.39PREDICTED: uncharacterized protein LOC103503101 [Cucumis melo][more]
gi|659116534|ref|XP_008458118.1|3.6e-1149.28PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo][more]
gi|985461745|ref|XP_015388537.1|6.8e-1049.28PREDICTED: uncharacterized protein LOC107178182 [Citrus sinensis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C021112T1MELO3C021112T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 9..73
score: 1.

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None