MELO3C021086 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C021086
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionBEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family .
Locationchr1 : 25925659 .. 25925868 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCACAATTACTGGAGCAAAGTCTGAAGCAGACCTCCATGTGGTCATGAAAACAGTTGTCAACAATAATTCCGACGACAAAAAACAAGAAGGCCCTGAAGACATCACCAATCTCTCAAATTCATCTGTCAATGATATCGATTTTGAAAATAATCCTTACTACAATTTCGATATTTTCGATCCCTATTTGAATTCCCAACCAGAATGA

mRNA sequence

ATGACCACAATTACTGGAGCAAAGTCTGAAGCAGACCTCCATGTGGTCATGAAAACAGTTGTCAACAATAATTCCGACGACAAAAAACAAGAAGGCCCTGAAGACATCACCAATCTCTCAAATTCATCTGTCAATGATATCGATTTTGAAAATAATCCTTACTACAATTTCGATATTTTCGATCCCTATTTGAATTCCCAACCAGAATGA

Coding sequence (CDS)

ATGACCACAATTACTGGAGCAAAGTCTGAAGCAGACCTCCATGTGGTCATGAAAACAGTTGTCAACAATAATTCCGACGACAAAAAACAAGAAGGCCCTGAAGACATCACCAATCTCTCAAATTCATCTGTCAATGATATCGATTTTGAAAATAATCCTTACTACAATTTCGATATTTTCGATCCCTATTTGAATTCCCAACCAGAATGA

Protein sequence

MTTITGAKSEADLHVVMKTVVNNNSDDKKQEGPEDITNLSNSSVNDIDFENNPYYNFDIFDPYLNSQPE*
Homology
[Close]
BLAST of MELO3C021086 vs. TrEMBL
Match: A0A0A0KXT5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G097660 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.4e-13
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 1 

Query: 1   MTTITGAKSEADLHVVMKTVVNNNSDDKKQEGPEDITNLSNSSVNDIDFENNPYYNFDIF 60
           MT I GAKSEADL  VM+TV++   DD K+   ED    SNS  NDIDF+N+PYYNFDI 
Sbjct: 74  MTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDIDFDNDPYYNFDIS 133

Query: 61  DPYLNS 67
           DPY +S
Sbjct: 134 DPYFDS 139

[Close]
BLAST of MELO3C021086 vs. NCBI nr
Match: gi|700198501|gb|KGN53659.1| (hypothetical protein Csa_4G097660 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 3.4e-13
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 1 

Query: 1   MTTITGAKSEADLHVVMKTVVNNNSDDKKQEGPEDITNLSNSSVNDIDFENNPYYNFDIF 60
           MT I GAKSEADL  VM+TV++   DD K+   ED    SNS  NDIDF+N+PYYNFDI 
Sbjct: 74  MTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDIDFDNDPYYNFDIS 133

Query: 61  DPYLNS 67
           DPY +S
Sbjct: 134 DPYFDS 139

The following BLAST results are available for this feature:
BLAST of MELO3C021086 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXT5_CUCSA2.4e-1360.61Uncharacterized protein OS=Cucumis sativus GN=Csa_4G097660 PE=4 SV=1[more]
BLAST of MELO3C021086 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198501|gb|KGN53659.1|3.4e-1360.61hypothetical protein Csa_4G097660 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C021086T1MELO3C021086T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C021086Cucumber (Gy14) v1cgymeB084
MELO3C021086Cucurbita maxima (Rimu)cmameB321
MELO3C021086Cucurbita maxima (Rimu)cmameB826
MELO3C021086Cucurbita moschata (Rifu)cmomeB314
MELO3C021086Cucurbita moschata (Rifu)cmomeB810
MELO3C021086Wild cucumber (PI 183967)cpimeB527
MELO3C021086Cucumber (Chinese Long) v2cumeB523
MELO3C021086Watermelon (Charleston Gray)mewcgB177
MELO3C021086Watermelon (97103) v1mewmB200
MELO3C021086Cucurbita pepo (Zucchini)cpemeB119
MELO3C021086Cucurbita pepo (Zucchini)cpemeB294
MELO3C021086Bottle gourd (USVL1VR-Ls)lsimeB187
MELO3C021086Cucumber (Gy14) v2cgybmeB459
MELO3C021086Silver-seed gourdcarmeB0011
MELO3C021086Silver-seed gourdcarmeB0083
MELO3C021086Cucumber (Chinese Long) v3cucmeB539
MELO3C021086Watermelon (97103) v2mewmbB225
MELO3C021086Wax gourdmewgoB256