MELO3C021048 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C021048
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Protein kinase protein with tetratricopeptide repeat domain
Location	chr1 : 25198839 .. 25199153 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCATCAACTCCACCTAGGCCTTCGGCCAAATTTATCCGTCCTTTTGGCGGAGTCGTTCAAATGAAGCCTCCTGCCTCTCCTTCATCCAATAGGAAGTCTTCTACTCCTCCTACAACTTATTCTCAGGCTGTCACCCCCGATAAACGGTTTGTGCCAAGACCCGAAATAAAATCTTATTTTCAAAAGTCTATCGTTGTTTATGATCCTATCATAGAACCCGAATATCAAAGTCTCACTTTAGAAGAGACAGTTTCAAAAATCTTTCCAGAGGACTTTAATTTTCTTCCTGAAGACCTTAGAAAAATATGA

mRNA sequence

ATGGAGTCATCAACTCCACCTAGGCCTTCGGCCAAATTTATCCGTCCTTTTGGCGGAGTCGTTCAAATGAAGCCTCCTGCCTCTCCTTCATCCAATAGGAAGTCTTCTACTCCTCCTACAACTTATTCTCAGGCTGTCACCCCCGATAAACGGTTTGTGCCAAGACCCGAAATAAAATCTTATTTTCAAAAGTCTATCGTTGTTTATGATCCTATCATAGAACCCGAATATCAAAGTCTCACTTTAGAAGAGACAGTTTCAAAAATCTTTCCAGAGGACTTTAATTTTCTTCCTGAAGACCTTAGAAAAATATGA

Coding sequence (CDS)

ATGGAGTCATCAACTCCACCTAGGCCTTCGGCCAAATTTATCCGTCCTTTTGGCGGAGTCGTTCAAATGAAGCCTCCTGCCTCTCCTTCATCCAATAGGAAGTCTTCTACTCCTCCTACAACTTATTCTCAGGCTGTCACCCCCGATAAACGGTTTGTGCCAAGACCCGAAATAAAATCTTATTTTCAAAAGTCTATCGTTGTTTATGATCCTATCATAGAACCCGAATATCAAAGTCTCACTTTAGAAGAGACAGTTTCAAAAATCTTTCCAGAGGACTTTAATTTTCTTCCTGAAGACCTTAGAAAAATATGA

Protein sequence

MESSTPPRPSAKFIRPFGGVVQMKPPASPSSNRKSSTPPTTYSQAVTPDKRFVPRPEIKSYFQKSIVVYDPIIEPEYQSLTLEETVSKIFPEDFNFLPEDLRKI*

Homology

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BLAST of MELO3C021048 vs. TrEMBL
Match: E5GCE6_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 3.5e-45
Identity = 91/102 (89.22%), Postives = 96/102 (94.12%), Query Frame = 1


Query: 2   ESSTPPRPSAKFIRPFGGVVQMKPPASPSSNRKSSTPPTTYSQAVTPDKRFVPRPEIKSY 61
           ESSTPPRPS   IRP GGV+QM+PPASPSSNR+SSTPPTTYSQAVT DKRFVPRPEIKSY
Sbjct: 64  ESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYSQAVTLDKRFVPRPEIKSY 123

Query: 62  FQKSIVVYDPIIEPEYQSLTLEETVSKIFPEDFNFLPEDLRK 104
           FQKSIVVYDPIIEPEYQSLTLEE VSKIFP+DFNFLPEDL+K
Sbjct: 124 FQKSIVVYDPIIEPEYQSLTLEEMVSKIFPKDFNFLPEDLKK 165

[Close]

BLAST of MELO3C021048 vs. TrEMBL
Match: A0A0A0K595_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G361530 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-06
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = 1


Query: 2   ESSTPPRPSAKFIRPFGGVVQMKPPASPSSNRKSSTPPTTYS 44
           ESSTPPRPS   IRP G V+Q +P AS  SNR SS PPTTYS
Sbjct: 67  ESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSSPPPTTYS 108

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BLAST of MELO3C021048 vs. NCBI nr
Match: gi|307136323|gb|ADN34145.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 188.7 bits (478), Expect = 5.1e-45
Identity = 91/102 (89.22%), Postives = 96/102 (94.12%), Query Frame = 1


Query: 2   ESSTPPRPSAKFIRPFGGVVQMKPPASPSSNRKSSTPPTTYSQAVTPDKRFVPRPEIKSY 61
           ESSTPPRPS   IRP GGV+QM+PPASPSSNR+SSTPPTTYSQAVT DKRFVPRPEIKSY
Sbjct: 64  ESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYSQAVTLDKRFVPRPEIKSY 123

Query: 62  FQKSIVVYDPIIEPEYQSLTLEETVSKIFPEDFNFLPEDLRK 104
           FQKSIVVYDPIIEPEYQSLTLEE VSKIFP+DFNFLPEDL+K
Sbjct: 124 FQKSIVVYDPIIEPEYQSLTLEEMVSKIFPKDFNFLPEDLKK 165

[Close]

BLAST of MELO3C021048 vs. NCBI nr
Match: gi|659098578|ref|XP_008450208.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 136.3 bits (342), Expect = 3.0e-29
Identity = 67/84 (79.76%), Postives = 72/84 (85.71%), Query Frame = 1


Query: 2   ESSTPPRPSAKFIRPFGGVVQMKPPASPSSNRKSSTPPTTYSQAVTPDKRFVPRPEIKSY 61
           ESSTPPRPSA  IR   GVVQM+P ASPSSNR+SSTPPTTYS  VTPDKRFVPRP+IKSY
Sbjct: 64  ESSTPPRPSANLIRLSDGVVQMRPHASPSSNRESSTPPTTYSHTVTPDKRFVPRPKIKSY 123

Query: 62  FQKSIVVYDPIIEPEYQSLTLEET 86
           FQKSIVVYDPIIEP+YQ+L    T
Sbjct: 124 FQKSIVVYDPIIEPKYQTLAQATT 147

[Close]

BLAST of MELO3C021048 vs. NCBI nr
Match: gi|700189415|gb|KGN44648.1| (hypothetical protein Csa_7G361530 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-06
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = 1


Query: 2   ESSTPPRPSAKFIRPFGGVVQMKPPASPSSNRKSSTPPTTYS 44
           ESSTPPRPS   IRP G V+Q +P AS  SNR SS PPTTYS
Sbjct: 67  ESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSSPPPTTYS 108

The following BLAST results are available for this feature:

BLAST of MELO3C021048 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCE6_CUCME	3.5e-45	89.22	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0K595_CUCSA	1.1e-06	69.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G361530 PE=4 SV=1	[more]

BLAST of MELO3C021048 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136323\|gb\|ADN34145.1\|	5.1e-45	89.22	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|659098578\|ref\|XP_008450208.1\|	3.0e-29	79.76	PREDICTED: putative protein TPRXL [Cucumis melo]	[more]
gi\|700189415\|gb\|KGN44648.1\|	1.6e-06	69.05	hypothetical protein Csa_7G361530 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C021048T1	MELO3C021048T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C021048	CSPI07G14750	Wild cucumber (PI 183967)	cpimeB536

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C021048	Bottle gourd (USVL1VR-Ls)	lsimeB187
MELO3C021048	Cucumber (Gy14) v2	cgybmeB459
MELO3C021048	Silver-seed gourd	carmeB0083
MELO3C021048	Silver-seed gourd	carmeB0434
MELO3C021048	Cucumber (Chinese Long) v3	cucmeB539
MELO3C021048	Watermelon (97103) v2	mewmbB225
MELO3C021048	Wax gourd	mewgoB256
MELO3C021048	Cucumber (Gy14) v1	cgymeB084
MELO3C021048	Cucurbita maxima (Rimu)	cmameB321
MELO3C021048	Cucurbita maxima (Rimu)	cmameB826
MELO3C021048	Cucurbita moschata (Rifu)	cmomeB314
MELO3C021048	Cucurbita moschata (Rifu)	cmomeB810
MELO3C021048	Wild cucumber (PI 183967)	cpimeB527
MELO3C021048	Cucumber (Chinese Long) v2	cumeB523
MELO3C021048	Watermelon (Charleston Gray)	mewcgB177
MELO3C021048	Watermelon (97103) v1	mewmB200
MELO3C021048	Cucurbita pepo (Zucchini)	cpemeB119
MELO3C021048	Cucurbita pepo (Zucchini)	cpemeB294