MELO3C021045 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C021045
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein, Ty3-gypsy subclass, putative
Location	chr1 : 25082973 .. 25083419 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACCATATGAGGCATTGTATGGTCGACGATGTAGAACTTCTGTTTGTTGGGATGAAGTTGGTGAAAGAAAGCTAATGGGGCTAGAATTGGTACGTTCCACCACAGAAAATGTGAAAGTAATCAAGGAAAAATTGAAAATGGCGCAAGATCGACAAAAACATTATGCTGATAAACAACGAAAAGATTTGGAATTTGAGGTTGGTGACAATGTTTTTCTTAAATTGTCACCATGGAAAGGCGTGCTAAGATTCAGAAGGAAGGGGAAACTAAGTCCAAGATATATTGGTCTATATGAAATTATTGAACGAATTGGACCGGTTGCATATCGATTAGCCCCGCCAATGGAACTTTCCAGAATCCATGATGTATTTCATGTATCGATGTTGCGTAAATACGTTCCTGACCCGACACACATCTTAGAATATCAACCAGTGCAGTTATAA

mRNA sequence

ATGGCACCATATGAGGCATTGTATGGTCGACGATGTAGAACTTCTGTTTGTTGGGATGAAGTTGGTGAAAGAAAGCTAATGGGGCTAGAATTGGTACGTTCCACCACAGAAAATGTGAAAGTAATCAAGGAAAAATTGAAAATGGCGCAAGATCGACAAAAACATTATGCTGATAAACAACGAAAAGATTTGGAATTTGAGGTTGGTGACAATGTTTTTCTTAAATTGTCACCATGGAAAGGCGTGCTAAGATTCAGAAGGAAGGGGAAACTAAGTCCAAGATATATTGGTCTATATGAAATTATTGAACGAATTGGACCGGTTGCATATCGATTAGCCCCGCCAATGGAACTTTCCAGAATCCATGATGTATTTCATGTATCGATGTTGCGTAAATACGTTCCTGACCCGACACACATCTTAGAATATCAACCAGTGCAGTTATAA

Coding sequence (CDS)

ATGGCACCATATGAGGCATTGTATGGTCGACGATGTAGAACTTCTGTTTGTTGGGATGAAGTTGGTGAAAGAAAGCTAATGGGGCTAGAATTGGTACGTTCCACCACAGAAAATGTGAAAGTAATCAAGGAAAAATTGAAAATGGCGCAAGATCGACAAAAACATTATGCTGATAAACAACGAAAAGATTTGGAATTTGAGGTTGGTGACAATGTTTTTCTTAAATTGTCACCATGGAAAGGCGTGCTAAGATTCAGAAGGAAGGGGAAACTAAGTCCAAGATATATTGGTCTATATGAAATTATTGAACGAATTGGACCGGTTGCATATCGATTAGCCCCGCCAATGGAACTTTCCAGAATCCATGATGTATTTCATGTATCGATGTTGCGTAAATACGTTCCTGACCCGACACACATCTTAGAATATCAACCAGTGCAGTTATAA

Protein sequence

MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQRKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL*

Homology

[Close]

BLAST of MELO3C021045 vs. TrEMBL
Match: M5VK25_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.7e-59
Identity = 110/148 (74.32%), Postives = 132/148 (89.19%), Query Frame = 1


Query: 1    MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ 60
            MAPYEALYGR+CRT +CW+EVG++KL  ++ +++TTE VK+IKEKLK+AQDRQK YAD +
Sbjct: 1287 MAPYEALYGRQCRTPICWNEVGDKKLEKVDSIQATTEKVKMIKEKLKIAQDRQKSYADNR 1346

Query: 61   RKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSR 120
             KDLEF VGD VFLKLSPWKGV+RF ++GKLSPRYIG YEI ERIGPVAYRLA P ELS+
Sbjct: 1347 SKDLEFAVGDWVFLKLSPWKGVMRFGKRGKLSPRYIGPYEITERIGPVAYRLALPAELSQ 1406

Query: 121  IHDVFHVSMLRKYVPDPTHILEYQPVQL 149
            +HDVFHVSMLRKY+ DP+HILEYQPV++
Sbjct: 1407 VHDVFHVSMLRKYMSDPSHILEYQPVEV 1434

[Close]

BLAST of MELO3C021045 vs. TrEMBL
Match: A0A061GZ31_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_040446 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.4e-58
Identity = 108/148 (72.97%), Postives = 130/148 (87.84%), Query Frame = 1


Query: 1   MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ 60
           MAPYEALYGR+CRT +CWDEVGERKL+ +EL+  T + VKVI+E+LK AQDRQK+Y+DK+
Sbjct: 1   MAPYEALYGRKCRTPLCWDEVGERKLVNVELIDLTNDKVKVIRERLKTAQDRQKNYSDKR 60

Query: 61  RKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSR 120
           RKDLEFEV D VFLK+SPWKGV+RF ++GKL+PRYIG + IIERIGPVAYRL  P EL R
Sbjct: 61  RKDLEFEVDDKVFLKVSPWKGVIRFAKRGKLNPRYIGPFRIIERIGPVAYRLELPPELDR 120

Query: 121 IHDVFHVSMLRKYVPDPTHILEYQPVQL 149
           IH+VFHVSML+KYVPDP+HILE  P++L
Sbjct: 121 IHNVFHVSMLKKYVPDPSHILETPPIEL 148

[Close]

BLAST of MELO3C021045 vs. TrEMBL
Match: A0A061EV23_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_023017 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.8e-58
Identity = 108/148 (72.97%), Postives = 130/148 (87.84%), Query Frame = 1


Query: 1   MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ 60
           MAPYEALYGR+CRT +CWDEVGERKL+ +EL+  T + VKVI+E+LK AQDRQK+Y+DK+
Sbjct: 34  MAPYEALYGRKCRTLLCWDEVGERKLVNVELIDLTNDKVKVIRERLKTAQDRQKNYSDKR 93

Query: 61  RKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSR 120
           RKDLEFEV D VFLK+SPWKGV+RF ++GKL+PRYIG + IIERIGPVAYRL  P EL R
Sbjct: 94  RKDLEFEVDDKVFLKVSPWKGVIRFAKRGKLNPRYIGPFRIIERIGPVAYRLELPPELDR 153

Query: 121 IHDVFHVSMLRKYVPDPTHILEYQPVQL 149
           IH+VFHVSML+KYVPDP+HILE  P++L
Sbjct: 154 IHNVFHVSMLKKYVPDPSHILETPPIEL 181

[Close]

BLAST of MELO3C021045 vs. TrEMBL
Match: A0A061FQL0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_043494 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 3.0e-58
Identity = 107/148 (72.30%), Postives = 129/148 (87.16%), Query Frame = 1


Query: 1   MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ 60
           MAPYEALYGR+CRT +CWDEVGERKL+ +EL+  T + +KVI+E+LK+AQDRQK YADKQ
Sbjct: 61  MAPYEALYGRKCRTPLCWDEVGERKLVSVELIELTNDKIKVIRERLKVAQDRQKSYADKQ 120

Query: 61  RKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSR 120
           RKDLEFE+ D VFLK+SPWKGV+RF ++GKL+ RYIG + IIERIGPVAYRL  P EL R
Sbjct: 121 RKDLEFEIDDKVFLKVSPWKGVIRFAKRGKLNLRYIGPFRIIERIGPVAYRLELPPELDR 180

Query: 121 IHDVFHVSMLRKYVPDPTHILEYQPVQL 149
           IH+VFHVSML+KYVPDP+HILE  P++L
Sbjct: 181 IHNVFHVSMLKKYVPDPSHILETPPIEL 208

[Close]

BLAST of MELO3C021045 vs. TrEMBL
Match: A0A061E5E3_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009998 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 4.0e-58
Identity = 107/148 (72.30%), Postives = 129/148 (87.16%), Query Frame = 1


Query: 1    MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ 60
            MAPYEALYGR+CRT +CWDEVGERKL+ +EL+  T + VKVI+E+LK AQDRQK+Y+DK+
Sbjct: 1314 MAPYEALYGRKCRTPLCWDEVGERKLVNVELIDLTNDKVKVIRERLKTAQDRQKNYSDKR 1373

Query: 61   RKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSR 120
            RKDLEFEV D VFLK+SPWKGV+RF ++GKL+PRYIG + IIERIGPVAYRL  P EL R
Sbjct: 1374 RKDLEFEVDDKVFLKVSPWKGVIRFAKRGKLNPRYIGPFHIIERIGPVAYRLELPPELDR 1433

Query: 121  IHDVFHVSMLRKYVPDPTHILEYQPVQL 149
            IH+ FHVSML+KYVPDP+HILE  P++L
Sbjct: 1434 IHNAFHVSMLKKYVPDPSHILETPPIEL 1461

[Close]

BLAST of MELO3C021045 vs. NCBI nr
Match: gi|595793033|ref|XP_007200265.1| (hypothetical protein PRUPE_ppa015000mg [Prunus persica])

HSP 1 Score: 236.1 bits (601), Expect = 3.9e-59
Identity = 110/148 (74.32%), Postives = 132/148 (89.19%), Query Frame = 1


Query: 1    MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ 60
            MAPYEALYGR+CRT +CW+EVG++KL  ++ +++TTE VK+IKEKLK+AQDRQK YAD +
Sbjct: 1287 MAPYEALYGRQCRTPICWNEVGDKKLEKVDSIQATTEKVKMIKEKLKIAQDRQKSYADNR 1346

Query: 61   RKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSR 120
             KDLEF VGD VFLKLSPWKGV+RF ++GKLSPRYIG YEI ERIGPVAYRLA P ELS+
Sbjct: 1347 SKDLEFAVGDWVFLKLSPWKGVMRFGKRGKLSPRYIGPYEITERIGPVAYRLALPAELSQ 1406

Query: 121  IHDVFHVSMLRKYVPDPTHILEYQPVQL 149
            +HDVFHVSMLRKY+ DP+HILEYQPV++
Sbjct: 1407 VHDVFHVSMLRKYMSDPSHILEYQPVEV 1434

[Close]

BLAST of MELO3C021045 vs. NCBI nr
Match: gi|659129924|ref|XP_008464914.1| (PREDICTED: uncharacterized protein LOC103502672 [Cucumis melo])

HSP 1 Score: 233.8 bits (595), Expect = 1.9e-58
Identity = 113/148 (76.35%), Postives = 127/148 (85.81%), Query Frame = 1


Query: 1   MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ 60
           M PYEALYGRRCRT VCWDEVGERKL+G ELV++T+ENVK I+E+LK  +DRQK YADK 
Sbjct: 356 MTPYEALYGRRCRTPVCWDEVGERKLVGPELVQTTSENVKFIRERLKTVKDRQKRYADKH 415

Query: 61  RKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSR 120
           ++DLEFEV D VFLKLSPWKGVLRF RK KLSP++IG YEI+E IG  AY LA PMELS 
Sbjct: 416 QRDLEFEVSDKVFLKLSPWKGVLRFGRKEKLSPKFIGSYEILECIGYAAYHLASPMELSS 475

Query: 121 IHDVFHVSMLRKYVPDPTHILEYQPVQL 149
           I+DVFHVSMLRKYVPDP+HILE QPV L
Sbjct: 476 INDVFHVSMLRKYVPDPSHILEAQPVHL 503

[Close]

BLAST of MELO3C021045 vs. NCBI nr
Match: gi|590583343|ref|XP_007014875.1| (Uncharacterized protein TCM_040446 [Theobroma cacao])

HSP 1 Score: 233.8 bits (595), Expect = 1.9e-58
Identity = 108/148 (72.97%), Postives = 130/148 (87.84%), Query Frame = 1


Query: 1   MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ 60
           MAPYEALYGR+CRT +CWDEVGERKL+ +EL+  T + VKVI+E+LK AQDRQK+Y+DK+
Sbjct: 1   MAPYEALYGRKCRTPLCWDEVGERKLVNVELIDLTNDKVKVIRERLKTAQDRQKNYSDKR 60

Query: 61  RKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSR 120
           RKDLEFEV D VFLK+SPWKGV+RF ++GKL+PRYIG + IIERIGPVAYRL  P EL R
Sbjct: 61  RKDLEFEVDDKVFLKVSPWKGVIRFAKRGKLNPRYIGPFRIIERIGPVAYRLELPPELDR 120

Query: 121 IHDVFHVSMLRKYVPDPTHILEYQPVQL 149
           IH+VFHVSML+KYVPDP+HILE  P++L
Sbjct: 121 IHNVFHVSMLKKYVPDPSHILETPPIEL 148

[Close]

BLAST of MELO3C021045 vs. NCBI nr
Match: gi|590633041|ref|XP_007028011.1| (Uncharacterized protein TCM_023017 [Theobroma cacao])

HSP 1 Score: 233.4 bits (594), Expect = 2.5e-58
Identity = 108/148 (72.97%), Postives = 130/148 (87.84%), Query Frame = 1


Query: 1   MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ 60
           MAPYEALYGR+CRT +CWDEVGERKL+ +EL+  T + VKVI+E+LK AQDRQK+Y+DK+
Sbjct: 34  MAPYEALYGRKCRTLLCWDEVGERKLVNVELIDLTNDKVKVIRERLKTAQDRQKNYSDKR 93

Query: 61  RKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSR 120
           RKDLEFEV D VFLK+SPWKGV+RF ++GKL+PRYIG + IIERIGPVAYRL  P EL R
Sbjct: 94  RKDLEFEVDDKVFLKVSPWKGVIRFAKRGKLNPRYIGPFRIIERIGPVAYRLELPPELDR 153

Query: 121 IHDVFHVSMLRKYVPDPTHILEYQPVQL 149
           IH+VFHVSML+KYVPDP+HILE  P++L
Sbjct: 154 IHNVFHVSMLKKYVPDPSHILETPPIEL 181

[Close]

BLAST of MELO3C021045 vs. NCBI nr
Match: gi|590566158|ref|XP_007010152.1| (Uncharacterized protein TCM_043494 [Theobroma cacao])

HSP 1 Score: 232.6 bits (592), Expect = 4.3e-58
Identity = 107/148 (72.30%), Postives = 129/148 (87.16%), Query Frame = 1


Query: 1   MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDRQKHYADKQ 60
           MAPYEALYGR+CRT +CWDEVGERKL+ +EL+  T + +KVI+E+LK+AQDRQK YADKQ
Sbjct: 61  MAPYEALYGRKCRTPLCWDEVGERKLVSVELIELTNDKIKVIRERLKVAQDRQKSYADKQ 120

Query: 61  RKDLEFEVGDNVFLKLSPWKGVLRFRRKGKLSPRYIGLYEIIERIGPVAYRLAPPMELSR 120
           RKDLEFE+ D VFLK+SPWKGV+RF ++GKL+ RYIG + IIERIGPVAYRL  P EL R
Sbjct: 121 RKDLEFEIDDKVFLKVSPWKGVIRFAKRGKLNLRYIGPFRIIERIGPVAYRLELPPELDR 180

Query: 121 IHDVFHVSMLRKYVPDPTHILEYQPVQL 149
           IH+VFHVSML+KYVPDP+HILE  P++L
Sbjct: 181 IHNVFHVSMLKKYVPDPSHILETPPIEL 208

The following BLAST results are available for this feature:

BLAST of MELO3C021045 vs. TrEMBL


Match Name	E-value	Identity	Description
M5VK25_PRUPE	2.7e-59	74.32	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1	[more]
A0A061GZ31_THECC	1.4e-58	72.97	Uncharacterized protein OS=Theobroma cacao GN=TCM_040446 PE=4 SV=1	[more]
A0A061EV23_THECC	1.8e-58	72.97	Uncharacterized protein OS=Theobroma cacao GN=TCM_023017 PE=4 SV=1	[more]
A0A061FQL0_THECC	3.0e-58	72.30	Uncharacterized protein OS=Theobroma cacao GN=TCM_043494 PE=4 SV=1	[more]
A0A061E5E3_THECC	4.0e-58	72.30	DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009998 PE=4 SV...	[more]

BLAST of MELO3C021045 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|595793033\|ref\|XP_007200265.1\|	3.9e-59	74.32	hypothetical protein PRUPE_ppa015000mg [Prunus persica]	[more]
gi\|659129924\|ref\|XP_008464914.1\|	1.9e-58	76.35	PREDICTED: uncharacterized protein LOC103502672 [Cucumis melo]	[more]
gi\|590583343\|ref\|XP_007014875.1\|	1.9e-58	72.97	Uncharacterized protein TCM_040446 [Theobroma cacao]	[more]
gi\|590633041\|ref\|XP_007028011.1\|	2.5e-58	72.97	Uncharacterized protein TCM_023017 [Theobroma cacao]	[more]
gi\|590566158\|ref\|XP_007010152.1\|	4.3e-58	72.30	Uncharacterized protein TCM_043494 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C021045T1	MELO3C021045T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 32..52 scor
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 1..148 score: 1.9
None	No IPR available	PANTHER	PTHR24559:SF207	SUBFAMILY NOT NAMED	coord: 1..148 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C021045	Cucumber (Gy14) v1	cgymeB084
MELO3C021045	Cucurbita maxima (Rimu)	cmameB321
MELO3C021045	Cucurbita maxima (Rimu)	cmameB826
MELO3C021045	Cucurbita moschata (Rifu)	cmomeB314
MELO3C021045	Cucurbita moschata (Rifu)	cmomeB810
MELO3C021045	Wild cucumber (PI 183967)	cpimeB536
MELO3C021045	Wild cucumber (PI 183967)	cpimeB527
MELO3C021045	Cucumber (Chinese Long) v2	cumeB523
MELO3C021045	Watermelon (Charleston Gray)	mewcgB177
MELO3C021045	Watermelon (97103) v1	mewmB200
MELO3C021045	Cucurbita pepo (Zucchini)	cpemeB119
MELO3C021045	Cucurbita pepo (Zucchini)	cpemeB294
MELO3C021045	Bottle gourd (USVL1VR-Ls)	lsimeB187
MELO3C021045	Cucumber (Gy14) v2	cgybmeB459
MELO3C021045	Silver-seed gourd	carmeB0083
MELO3C021045	Silver-seed gourd	carmeB0434
MELO3C021045	Cucumber (Chinese Long) v3	cucmeB539
MELO3C021045	Watermelon (97103) v2	mewmbB225