MELO3C020734 (gene) Melon (DHL92) v3.5.1

NameMELO3C020734
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA-directed RNA polymerase subunit beta'
Locationchr8 : 9667252 .. 9667419 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATTGCGAGGACGTTAACGACGTGGACGAGGGGGACTCCACGTATGCGACGACGACTGCTTCAGAAGACATTCACTACATTGAGACAACAAACGAGTGGTCTCAATGGCACGACGAACTAGCCGAATCGATGTTCACTGATTGGCAGTTGCGTAACGCTTAG

mRNA sequence

ATGACATATTGCGAGGACGTTAACGACGTGGACGAGGGGGACTCCACGTATGCGACGACGACTGCTTCAGAAGACATTCACTACATTGAGACAACAAACGAGTGGTCTCAATGGCACGACGAACTAGCCGAATCGATGTTCACTGATTGGCAGTTGCGTAACGCTTAG

Coding sequence (CDS)

ATGACATATTGCGAGGACGTTAACGACGTGGACGAGGGGGACTCCACGTATGCGACGACGACTGCTTCAGAAGACATTCACTACATTGAGACAACAAACGAGTGGTCTCAATGGCACGACGAACTAGCCGAATCGATGTTCACTGATTGGCAGTTGCGTAACGCTTAG

Protein sequence

MTYCEDVNDVDEGDSTYATTTASEDIHYIETTNEWSQWHDELAESMFTDWQLRNA*
BLAST of MELO3C020734 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 4.0e-19
Identity = 45/53 (84.91%), Postives = 46/53 (86.79%), Query Frame = 1

Query: 1   MTYCEDVNDVDEGDSTYATTTASEDIHYIETTNEWSQWHDELAESMFTDWQLR 54
           MTYC DV D DEGDSTYATTTASEDI YIETTNEWSQW D+LA SMFTDWQ R
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

BLAST of MELO3C020734 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.7e-07
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 1

Query: 1   MTYCEDVNDVDEGDSTYATTTASEDIHYIETTNEWSQWHDELAESMFT 49
           MT  +  +++DE DST+AT TA++DIHYIET+NEWSQW D LAE + T
Sbjct: 311 MTNFDIEDNIDEVDSTHAT-TAADDIHYIETSNEWSQWRDNLAEEIMT 357

BLAST of MELO3C020734 vs. TrEMBL
Match: A0A0A0M0G4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690220 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.0e-06
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 1

Query: 1  MTYCEDVNDVDEGDSTYATTTASEDIHYIETTNEWSQWHDELAESMFTDWQLRN 55
          +T  + + DVDE D  YATT  + +I+Y E +N+WSQW D+L E+MF  WQL N
Sbjct: 14 ITNVKILKDVDEVDLNYATTEGN-NINYNEASNKWSQWRDDLVEAMFNGWQLCN 66

BLAST of MELO3C020734 vs. NCBI nr
Match: gi|659099182|ref|XP_008450472.1| (PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo])

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-19
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 1

Query: 1   MTYCEDVNDVDEGDSTYATTTASEDIHYIETTNEWSQWHDELAESMFTDWQLRNA 56
           MTYC+DV+DVDEGD  YATTT  E+IHYIE TNEWSQW D+LAESMFTDWQLRNA
Sbjct: 142 MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA 196

BLAST of MELO3C020734 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 101.3 bits (251), Expect = 5.7e-19
Identity = 45/53 (84.91%), Postives = 46/53 (86.79%), Query Frame = 1

Query: 1   MTYCEDVNDVDEGDSTYATTTASEDIHYIETTNEWSQWHDELAESMFTDWQLR 54
           MTYC DV D DEGDSTYATTTASEDI YIETTNEWSQW D+LA SMFTDWQ R
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

BLAST of MELO3C020734 vs. NCBI nr
Match: gi|659121362|ref|XP_008460622.1| (PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo])

HSP 1 Score: 79.7 bits (195), Expect = 1.8e-12
Identity = 36/54 (66.67%), Postives = 46/54 (85.19%), Query Frame = 1

Query: 1   MTYCEDVNDVDEGDSTYATTTASEDIHYIETTNEWSQWHDELAESMFTDWQLRN 55
           MT  +  +++DE DST+AT TA++DIHYIET+NEWSQW D+LAE MFTDW+LRN
Sbjct: 150 MTNFDIEDNIDEVDSTHAT-TAADDIHYIETSNEWSQWRDDLAEEMFTDWELRN 202

BLAST of MELO3C020734 vs. NCBI nr
Match: gi|659125597|ref|XP_008462767.1| (PREDICTED: uncharacterized protein LOC103501052 [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 5.1e-12
Identity = 33/53 (62.26%), Postives = 43/53 (81.13%), Query Frame = 1

Query: 1   MTYCEDVNDVDEGDSTYATTTASEDIHYIETTNEWSQWHDELAESMFTDWQLR 54
           MT  ED+ D++E DS YATTT  ++I YIETTNEW+QW DEL+++MF +WQLR
Sbjct: 107 MTNGEDLYDINEEDSAYATTTTGDNIQYIETTNEWTQWQDELSKAMFIEWQLR 159

BLAST of MELO3C020734 vs. NCBI nr
Match: gi|659126170|ref|XP_008463047.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-11
Identity = 32/49 (65.31%), Postives = 41/49 (83.67%), Query Frame = 1

Query: 1   MTYCEDVNDVDEGDSTYATTTASEDIHYIETTNEWSQWHDELAESMFTD 50
           MT C+D++DVDEG+S Y  T A EDI YIETTNEWSQW+D+LAE++F +
Sbjct: 203 MTNCDDIDDVDEGNSAYTKTIAIEDIKYIETTNEWSQWYDKLAEALFIE 251

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GBB2_CUCME4.0e-1984.91Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCB5_CUCME2.7e-0760.42Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0M0G4_CUCSA5.0e-0650.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690220 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659099182|ref|XP_008450472.1|1.5e-1981.82PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo][more]
gi|307135889|gb|ADN33754.1|5.7e-1984.91retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659121362|ref|XP_008460622.1|1.8e-1266.67PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo][more]
gi|659125597|ref|XP_008462767.1|5.1e-1262.26PREDICTED: uncharacterized protein LOC103501052 [Cucumis melo][more]
gi|659126170|ref|XP_008463047.1|1.5e-1165.31PREDICTED: putative nuclease HARBI1 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020734T1MELO3C020734T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C020734Cucurbita moschata (Rifu)cmomeB608
MELO3C020734Wild cucumber (PI 183967)cpimeB339
MELO3C020734Cucumber (Chinese Long) v2cumeB278
MELO3C020734Watermelon (Charleston Gray)mewcgB528
MELO3C020734Watermelon (97103) v1mewmB590
MELO3C020734Bottle gourd (USVL1VR-Ls)lsimeB154
MELO3C020734Watermelon (97103) v2mewmbB536
MELO3C020734Wax gourdmewgoB662