MELO3C020682 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C020682
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionSET domain protein 25
Locationchr12 : 2522478 .. 2523327 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGACACCATCTTCTTCACCAAACCCTACTTCCAAACATAAAAGGTTCAAGATGATTTTGGCTCGTCATCCCTATCAACGTTTGCGCCGTACAAGTGAACTCCCACCTGCATCTTGTTCAAAATCTATCGAGGTTCTGCATGCTTAATGTACTTGTACACCAGCCTCAAGACGTCTCAAAACAGCATCAAAATGCACCACAGCTACTGTCTCTTAGGTATCTCCTTCTGCCTGTAGTAGACCTGATTCTCAACGTAAACCTAGGGTCATCATCTCCAATTCTGAGTCCGAAGAAGATGTTGCTTCTGAACCTTCGTCTTTAGATGAAGGCAACGTTGTCTTAGCTGATGTGCTCAAATGGAAAGCCACTACCTTTGCATCTGCCACTCATGTCAAGAGCCCTAAACCACAGACAAGAAGTTCAAACCCTTCAACCAAAAAACTCAGAAGAACTGTACGACGAACTGTTTGGTTTGCCTTCCTCCAGTTTAGGTTTTTCTCCTTCTGGCAAGTTTCCATCTTCTGCTACTCTTTTGTCCTCTCAAGTTCCCCATTCGTCTGATGAACCTATTGATGATCTATTTGTTGAGTTTCAGCATGTTCCTGCTCCCCATGGAGAAGGTACCTCCTATGCACCCCTTGCTATTAATTCGTTACCTGAGTCTGCACCATTGCAAACTATTACTACTCAAGAGCCTCTGCTTTCTACACCTACCTCATCTCATCACACTGCTGCTTCTAAAACTACTACTCACTTCCCCAATCTGGTTCTATTCCAGTCCCTTCTGAAAATCTGCCTCACAAGTTGTATCGGGCCCCCTCCACAACCAGAAAGTAATGACGACTAA

mRNA sequence

ATGTCGACACCATCTTCTTCACCAAACCCTACTTCCAAACATAAAAGGTTCAAGATGATTTTGGCTCGTCATCCCTATCAACGTTTGCGCCGTACAAGTGAACTCCCACCTGCATCTTGTTCAAAATCTATCGAGGTATCTCCTTCTGCCTGTAGTAGACCTGATTCTCAACGTAAACCTAGGGTCATCATCTCCAATTCTGAGTCCGAAGAAGATGTTGCTTCTGAACCTTCGTCTTTAGATGAAGGCAACGTTGTCTTAGCTGATGTGCTCAAATGGAAAGCCACTACCTTTGCATCTGCCACTCATGTCAAGAGCCCTAAACCACAGACAAGAAGTTCAAACCCTTCAACCAAAAAACTCAGAAGAACTCATGTTCCTGCTCCCCATGGAGAAGGTACCTCCTATGCACCCCTTGCTATTAATTCGTTACCTGAGTCTGCACCATTGCAAACTATTACTACTCAAGAGCCTCTGCTTTCTACACCTACCTCATCTCATCACACTGCTGCTTCTAAAACTACTACTCACTTCCCCAATCTGGTTCTATTCCAGTCCCTTCTGAAAATCTGCCTCACAAGTTGTATCGGGCCCCCTCCACAACCAGAAAGTAATGACGACTAA

Coding sequence (CDS)

ATGTCGACACCATCTTCTTCACCAAACCCTACTTCCAAACATAAAAGGTTCAAGATGATTTTGGCTCGTCATCCCTATCAACGTTTGCGCCGTACAAGTGAACTCCCACCTGCATCTTGTTCAAAATCTATCGAGGTATCTCCTTCTGCCTGTAGTAGACCTGATTCTCAACGTAAACCTAGGGTCATCATCTCCAATTCTGAGTCCGAAGAAGATGTTGCTTCTGAACCTTCGTCTTTAGATGAAGGCAACGTTGTCTTAGCTGATGTGCTCAAATGGAAAGCCACTACCTTTGCATCTGCCACTCATGTCAAGAGCCCTAAACCACAGACAAGAAGTTCAAACCCTTCAACCAAAAAACTCAGAAGAACTCATGTTCCTGCTCCCCATGGAGAAGGTACCTCCTATGCACCCCTTGCTATTAATTCGTTACCTGAGTCTGCACCATTGCAAACTATTACTACTCAAGAGCCTCTGCTTTCTACACCTACCTCATCTCATCACACTGCTGCTTCTAAAACTACTACTCACTTCCCCAATCTGGTTCTATTCCAGTCCCTTCTGAAAATCTGCCTCACAAGTTGTATCGGGCCCCCTCCACAACCAGAAAGTAATGACGACTAA

Protein sequence

MSTPSSSPNPTSKHKRFKMILARHPYQRLRRTSELPPASCSKSIEVSPSACSRPDSQRKPRVIISNSESEEDVASEPSSLDEGNVVLADVLKWKATTFASATHVKSPKPQTRSSNPSTKKLRRTHVPAPHGEGTSYAPLAINSLPESAPLQTITTQEPLLSTPTSSHHTAASKTTTHFPNLVLFQSLLKICLTSCIGPPPQPESNDD*
Homology
[Close]
BLAST of MELO3C020682 vs. NCBI nr
Match: gi|659116526|ref|XP_008458113.1| (PREDICTED: uncharacterized protein LOC103497643 [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 7.0e-14
Identity = 56/126 (44.44%), Postives = 68/126 (53.97%), Query Frame = 1 

Query: 62  VIISNSESEEDVASEPSSLDEGNVVLADVLKWKATT---FASATHVKSPKPQTRSSNPST 121
           VIIS+SESE+DV + P S DE  VV+ DVLK KA +   F+ +    S     RSS+   
Sbjct: 51  VIISDSESEDDVETAPVSFDEYGVVVVDVLKQKAISVKRFSPSRKFPSSLQVPRSSDEPI 110

Query: 122 KKL--RRTHVPAPHGEGTSYAPLAINSLPESAPLQTITTQEPLLSTPTSSHHTAASKTTT 181
             L     HV  PHGE +SYAP  ++S   S   QT   QEP   TP SSH T     TT
Sbjct: 111 DDLFDEFQHVSIPHGEESSYAPPTVDSFSGSTLSQTTAAQEPPFFTPASSHPTDVPDVTT 170

Query: 182 HFPNLV 183
           H P+ V
Sbjct: 171 HAPSSV 176

[Close]
BLAST of MELO3C020682 vs. NCBI nr
Match: gi|659114880|ref|XP_008457271.1| (PREDICTED: uncharacterized protein LOC103496999 [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-08
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = 1 

Query: 14  HKRFKMILARHPYQRLRRTSELPPASCSKS--IEVSPSACSRPDSQRKPRVIISNSESEE 73
           HK+   +L       L       P+ C+ +   +VSPSA SRP +QRKPRVIIS+SE E+
Sbjct: 174 HKKSTKVLHAQSTTTLASRHLKKPSKCNTATVFQVSPSASSRPATQRKPRVIISDSEFED 233

Query: 74  DVASEPSSLDEGNVVLADVLK 93
           DVA+E +S DE ++VLA+VLK
Sbjct: 234 DVATELASSDEDDIVLANVLK 254

The following BLAST results are available for this feature:
BLAST of MELO3C020682 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659116526|ref|XP_008458113.1|7.0e-1444.44PREDICTED: uncharacterized protein LOC103497643 [Cucumis melo][more]
gi|659114880|ref|XP_008457271.1|1.5e-0848.15PREDICTED: uncharacterized protein LOC103496999 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020682T1MELO3C020682T1mRNA


Synteny