MELO3C020640.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020640.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	ATP synthase epsilon chain, chloroplastic
Location	chr12 : 1841754 .. 1841960 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGATTCCTAGGATGGTTAACGATGGCTTTGATGGGTGGTTTTGCTAGAATAGGGAATAATGAGGCCACTATTTTAGTCAATGATGGGGAGAAGGTTGGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCGGTAGCCAACTTGAGGAAAGGTCAGGGCAAGAGACAAAGAATCGAGGCAAATTGAGCTCTCAGACGA

mRNA sequence

TGATTCCTAGGATGGTTAACGATGGCTTTGATGGGTGGTTTTGCTAGAATAGGGAATAATGAGGCCACTATTTTAGTCAATGATGGGGAGAAGGTTGGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCGGTAGCCAACTTGAGGAAAGGTCAGGGCAAGAGACAAAGAATCGAGGCAAATTGAGCTCTCAGACGA

Coding sequence (CDS)

ATGGCTTTGATGGGTGGTTTTGCTAGAATAGGGAATAATGAGGCCACTATTTTAGTCAATGATGGGGAGAAGGTTGGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCGGTAGCCAACTTGAGGAAAGGTCAGGGCAAGAGACAAAGAATCGAGGCAAATTGA

Protein sequence

MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN

Homology

[Close]

BLAST of MELO3C020640.2 vs. NCBI nr
Match: ADM63624.1 (ATP synthase CF1 epsilon subunit, partial (chloroplast) [Abrophyllum ornans])

HSP 1 Score: 98.6 bits (244), Expect = 7.3e-18
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 58
          MALMGGFARIGNNE T+LVND EK GDIDPQEAQQTLEIA ANLRK +GKRQ+IEAN
Sbjct: 43 MALMGGFARIGNNEITVLVNDAEKSGDIDPQEAQQTLEIAEANLRKAEGKRQKIEAN 99

[Close]

BLAST of MELO3C020640.2 vs. NCBI nr
Match: ADM63635.1 (ATP synthase CF1 epsilon subunit, partial (chloroplast) [Cuttsia viburnea])

HSP 1 Score: 98.6 bits (244), Expect = 7.3e-18
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1   MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 58
           MALMGGFARIGNNE T+LVND EK GDIDPQEAQQTLEIA ANLRK +GKRQ+IEAN
Sbjct: 53  MALMGGFARIGNNEITVLVNDAEKSGDIDPQEAQQTLEIAEANLRKAEGKRQKIEAN 109

[Close]

BLAST of MELO3C020640.2 vs. NCBI nr
Match: AKZ30339.1 (ATP synthase CF1 epsilon subunit (chloroplast) [Goodenia hassallii])

HSP 1 Score: 98.2 bits (243), Expect = 9.5e-18
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1   MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 58
           MALMGGFARIGNNE T+LVND EK GDIDPQEA+QTLEIA ANLRK +GKRQRIEAN
Sbjct: 60  MALMGGFARIGNNEITVLVNDAEKSGDIDPQEARQTLEIAKANLRKAEGKRQRIEAN 116

[Close]

BLAST of MELO3C020640.2 vs. NCBI nr
Match: ADM63673.1 (ATP synthase CF1 epsilon subunit, partial (chloroplast) [Villarsia sp. Fay s.n.])

HSP 1 Score: 97.8 bits (242), Expect = 1.2e-17
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1   MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 58
           MALMGGF+RIGNNE TILVND EK GDIDPQEAQQTLEIA ANLRK +GKRQ+IEAN
Sbjct: 49  MALMGGFSRIGNNEITILVNDAEKSGDIDPQEAQQTLEIAEANLRKAEGKRQKIEAN 105

[Close]

BLAST of MELO3C020640.2 vs. NCBI nr
Match: ALO21750.1 (AtpE (plastid) [Cucurbita argyrosperma] >ALO21827.1 AtpE (plastid) [Cucurbita argyrosperma var. palmeri])

HSP 1 Score: 97.8 bits (242), Expect = 1.2e-17
Identity = 50/57 (87.72%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1   MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 58
           MALMGGFARIGNNE TILVND EK  DIDPQEAQQTLEIA ANLRK QGKRQ IEAN
Sbjct: 62  MALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEAN 118

[Close]

BLAST of MELO3C020640.2 vs. TAIR10
Match: ATCG00470.1 (ATP synthase epsilon chain)

HSP 1 Score: 95.1 bits (235), Expect = 1.5e-20
Identity = 49/57 (85.96%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1   MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 58
           MALMGGFARIGNNE TILVND EK  DIDPQEAQQTLEIA ANLRK +GKRQ IEAN
Sbjct: 60  MALMGGFARIGNNEITILVNDAEKNSDIDPQEAQQTLEIAEANLRKAEGKRQTIEAN 116

[Close]

BLAST of MELO3C020640.2 vs. Swiss-Prot
Match: sp|Q4VZG9|ATPE_CUCSA (ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 4.1e-20
Identity = 50/57 (87.72%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1   MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 58
           MALMGGFARIGNNE TILVND EK  DIDPQEAQQTLEIA ANLRK QGKRQ IEAN
Sbjct: 62  MALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEAN 118

[Close]

BLAST of MELO3C020640.2 vs. Swiss-Prot
Match: sp|P09468|ATPE_ARATH (ATP synthase epsilon chain, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=atpE PE=1 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 2.6e-19
Identity = 49/57 (85.96%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1   MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 58
           MALMGGFARIGNNE TILVND EK  DIDPQEAQQTLEIA ANLRK +GKRQ IEAN
Sbjct: 60  MALMGGFARIGNNEITILVNDAEKNSDIDPQEAQQTLEIAEANLRKAEGKRQTIEAN 116

[Close]

BLAST of MELO3C020640.2 vs. Swiss-Prot
Match: sp|Q06RC3|ATPE_JASNU (ATP synthase epsilon chain, chloroplastic OS=Jasminum nudiflorum OX=126431 GN=atpE PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.5e-19
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 1   MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 58
           +ALMGGFARIGNNE T+LVND E+  DIDPQEAQQTLEIA ANLRK +GKRQRIEAN
Sbjct: 60  VALMGGFARIGNNEITVLVNDAERGSDIDPQEAQQTLEIAEANLRKAEGKRQRIEAN 116

[Close]

BLAST of MELO3C020640.2 vs. Swiss-Prot
Match: sp|Q332X2|ATPE_LACSA (ATP synthase epsilon chain, chloroplastic OS=Lactuca sativa OX=4236 GN=atpE PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.5e-19
Identity = 48/57 (84.21%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1   MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 58
           MALMGGFARIGNNE T+LVND EK GDIDPQEAQQTLEIA A LRK +GKRQ IEAN
Sbjct: 60  MALMGGFARIGNNEITVLVNDAEKSGDIDPQEAQQTLEIAEAALRKAEGKRQTIEAN 116

[Close]

BLAST of MELO3C020640.2 vs. Swiss-Prot
Match: sp|Q14FF1|ATPE_POPAL (ATP synthase epsilon chain, chloroplastic OS=Populus alba OX=43335 GN=atpE PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.5e-19
Identity = 48/57 (84.21%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1   MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 58
           MALMGGFARIGNNE T+LVND EK  DIDPQEAQQTLEIA ANLRK +GKRQ IEAN
Sbjct: 60  MALMGGFARIGNNEVTVLVNDAEKGSDIDPQEAQQTLEIAEANLRKAEGKRQIIEAN 116

[Close]

BLAST of MELO3C020640.2 vs. TrEMBL
Match: tr|E0XEI1|E0XEI1_9ASTR (ATP synthase epsilon chain, chloroplastic (Fragment) OS=Cuttsia viburnea OX=54176 GN=atpE PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.8e-18
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1   MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 58
           MALMGGFARIGNNE T+LVND EK GDIDPQEAQQTLEIA ANLRK +GKRQ+IEAN
Sbjct: 53  MALMGGFARIGNNEITVLVNDAEKSGDIDPQEAQQTLEIAEANLRKAEGKRQKIEAN 109

[Close]

BLAST of MELO3C020640.2 vs. TrEMBL
Match: tr|E0XEH0|E0XEH0_ABROR (ATP synthase epsilon chain, chloroplastic (Fragment) OS=Abrophyllum ornans OX=49579 GN=atpE PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.8e-18
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 58
          MALMGGFARIGNNE T+LVND EK GDIDPQEAQQTLEIA ANLRK +GKRQ+IEAN
Sbjct: 43 MALMGGFARIGNNEITVLVNDAEKSGDIDPQEAQQTLEIAEANLRKAEGKRQKIEAN 99

[Close]

BLAST of MELO3C020640.2 vs. TrEMBL
Match: tr|A0A0K1ZVL8|A0A0K1ZVL8_9ASTR (ATP synthase epsilon chain, chloroplastic OS=Goodenia hassallii OX=1690104 GN=atpE PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 6.3e-18
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1   MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 58
           MALMGGFARIGNNE T+LVND EK GDIDPQEA+QTLEIA ANLRK +GKRQRIEAN
Sbjct: 60  MALMGGFARIGNNEITVLVNDAEKSGDIDPQEARQTLEIAKANLRKAEGKRQRIEAN 116

[Close]

BLAST of MELO3C020640.2 vs. TrEMBL
Match: tr|X2EZM8|X2EZM8_LAGSI (ATP synthase epsilon chain, chloroplastic OS=Lagenaria siceraria OX=3668 GN=atpE PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 8.2e-18
Identity = 50/57 (87.72%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1   MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 58
           MALMGGFARIGNNE TILVND EK  DIDPQEAQQTLEIA ANLRK QGKRQ IEAN
Sbjct: 62  MALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEAN 118

[Close]

BLAST of MELO3C020640.2 vs. TrEMBL
Match: tr|A0A249RXP3|A0A249RXP3_CUCME (ATP synthase epsilon chain, chloroplastic OS=Cucumis melo subsp. agrestis OX=217619 GN=atpE PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 8.2e-18
Identity = 50/57 (87.72%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1   MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 58
           MALMGGFARIGNNE TILVND EK  DIDPQEAQQTLEIA ANLRK QGKRQ IEAN
Sbjct: 62  MALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEAN 118

The following BLAST results are available for this feature:

BLAST of MELO3C020640.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ADM63624.1	7.3e-18	85.96	ATP synthase CF1 epsilon subunit, partial (chloroplast) [Abrophyllum ornans]	[more]
ADM63635.1	7.3e-18	85.96	ATP synthase CF1 epsilon subunit, partial (chloroplast) [Cuttsia viburnea]	[more]
AKZ30339.1	9.5e-18	85.96	ATP synthase CF1 epsilon subunit (chloroplast) [Goodenia hassallii]	[more]
ADM63673.1	1.2e-17	85.96	ATP synthase CF1 epsilon subunit, partial (chloroplast) [Villarsia sp. Fay s.n.]	[more]
ALO21750.1	1.2e-17	87.72	AtpE (plastid) [Cucurbita argyrosperma] >ALO21827.1 AtpE (plastid) [Cucurbita ar...	[more]

BLAST of MELO3C020640.2 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00470.1	1.5e-20	85.96	ATP synthase epsilon chain	[more]

BLAST of MELO3C020640.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q4VZG9\|ATPE_CUCSA	4.1e-20	87.72	ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=...	[more]
sp\|P09468\|ATPE_ARATH	2.6e-19	85.96	ATP synthase epsilon chain, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=atp...	[more]
sp\|Q06RC3\|ATPE_JASNU	4.5e-19	82.46	ATP synthase epsilon chain, chloroplastic OS=Jasminum nudiflorum OX=126431 GN=at...	[more]
sp\|Q332X2\|ATPE_LACSA	4.5e-19	84.21	ATP synthase epsilon chain, chloroplastic OS=Lactuca sativa OX=4236 GN=atpE PE=3...	[more]
sp\|Q14FF1\|ATPE_POPAL	4.5e-19	84.21	ATP synthase epsilon chain, chloroplastic OS=Populus alba OX=43335 GN=atpE PE=3 ...	[more]

BLAST of MELO3C020640.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E0XEI1\|E0XEI1_9ASTR	4.8e-18	85.96	ATP synthase epsilon chain, chloroplastic (Fragment) OS=Cuttsia viburnea OX=5417...	[more]
tr\|E0XEH0\|E0XEH0_ABROR	4.8e-18	85.96	ATP synthase epsilon chain, chloroplastic (Fragment) OS=Abrophyllum ornans OX=49...	[more]
tr\|A0A0K1ZVL8\|A0A0K1ZVL8_9ASTR	6.3e-18	85.96	ATP synthase epsilon chain, chloroplastic OS=Goodenia hassallii OX=1690104 GN=at...	[more]
tr\|X2EZM8\|X2EZM8_LAGSI	8.2e-18	87.72	ATP synthase epsilon chain, chloroplastic OS=Lagenaria siceraria OX=3668 GN=atpE...	[more]
tr\|A0A249RXP3\|A0A249RXP3_CUCME	8.2e-18	87.72	ATP synthase epsilon chain, chloroplastic OS=Cucumis melo subsp. agrestis OX=217...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0015986	ATP synthesis coupled proton transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)

Vocabulary: **Molecular Function**
Term	Definition
GO:0046933	proton-transporting ATP synthase activity, rotational mechanism

Vocabulary: **INTERPRO**
Term	Definition
IPR020546	ATP_synth_F1_dsu/esu_N
IPR001469	ATP_synth_F1_dsu/esu
IPR036771	ATPsynth_dsu/esu_N

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006754	ATP biosynthetic process
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0006811	ion transport
biological_process	GO:0015992	proton transport
biological_process	GO:0006810	transport
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0009536	plastid
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020640.2.1	MELO3C020640.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036771	F0F1 ATP synthase delta/epsilon subunit, N-terminal	GENE3D	G3DSA:2.60.15.10		coord: 1..57 e-value: 1.8E-7 score: 33.0
None	No IPR available	PANTHER	PTHR13822:SF8	ATP SYNTHASE EPSILON CHAIN, CHLOROPLASTIC	coord: 1..57
IPR001469	ATP synthase, F1 complex, delta/epsilon subunit	PANTHER	PTHR13822	ATP SYNTHASE DELTA/EPSILON CHAIN	coord: 1..57
IPR020546	ATP synthase, F1 complex, delta/epsilon subunit, N-terminal	PRODOM	PD000944		coord: 1..28 e-value: 8.0E-4 score: 94.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020640.2	Cucumber (Gy14) v2	cgybmedB021
MELO3C020640.2	Cucurbita maxima (Rimu)	cmamedB215
MELO3C020640.2	Cucurbita maxima (Rimu)	cmamedB451
MELO3C020640.2	Cucurbita moschata (Rifu)	cmomedB203
MELO3C020640.2	Cucurbita moschata (Rifu)	cmomedB439
MELO3C020640.2	Cucurbita pepo (Zucchini)	cpemedB561
MELO3C020640.2	Cucurbita pepo (Zucchini)	cpemedB581
MELO3C020640.2	Cucumber (Chinese Long) v2	cumedB023
MELO3C020640.2	Wild cucumber (PI 183967)	cpimedB024
MELO3C020640.2	Bottle gourd (USVL1VR-Ls)	lsimedB183
MELO3C020640.2	Watermelon (Charleston Gray)	medwcgB141
MELO3C020640.2	Watermelon (97103) v1	medwmB143
MELO3C020640.2	Silver-seed gourd	carmedB0392
MELO3C020640.2	Silver-seed gourd	carmedB0451
MELO3C020640.2	Cucumber (Chinese Long) v3	cucmedB023
MELO3C020640.2	Watermelon (97103) v2	medwmbB142
MELO3C020640.2	Wax gourd	medwgoB164