MELO3C020548.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020548.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	60s ribosomal protein l2, mitochondrial
Location	chr12 : 895102 .. 895334 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGACAATTGAGAGGTTCTCACTGAGCATTCCTAGTCACACGGGAAGAGAGGTCAAATGGCAAGGCCATATGCTCGTTTGGCTCTTCGTAGAGTATAGCTCACATCCAAACAAAGATCTGATTGGGGAATGGGGTAAGGCCCATAAAGCTCCAGTGGAAAGGGAAGGCCTACTAGCCCGTATGCTCATGGGTGCAGGACTCTTTGAAAAAGCGCGGGCTGACTCGGAGACCTGG

mRNA sequence

TGACAATTGAGAGGTTCTCACTGAGCATTCCTAGTCACACGGGAAGAGAGGTCAAATGGCAAGGCCATATGCTCGTTTGGCTCTTCGTAGAGTATAGCTCACATCCAAACAAAGATCTGATTGGGGAATGGGGTAAGGCCCATAAAGCTCCAGTGGAAAGGGAAGGCCTACTAGCCCGTATGCTCATGGGTGCAGGACTCTTTGAAAAAGCGCGGGCTGACTCGGAGACCTGG

Coding sequence (CDS)

ATGCTCGTTTGGCTCTTCGTAGAGTATAGCTCACATCCAAACAAAGATCTGATTGGGGAATGGGGTAAGGCCCATAAAGCTCCAGTGGAAAGGGAAGGCCTACTAGCCCGTATGCTCATGGGTGCAGGACTCTTTGAAAAAGCGCGGGCTGACTCGGAGACCTGG

Protein sequence

MLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKARADSETW

Homology

[Close]

BLAST of MELO3C020548.2 vs. NCBI nr
Match: OIT06415.1 (60s ribosomal protein l2, mitochondrial [Nicotiana attenuata])

HSP 1 Score: 68.2 bits (165), Expect = 1.0e-08
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 14  NKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKARADSETW 56
           +K LIGE G AH+AP EREGL  RM MGAG FEKARADSETW
Sbjct: 226 SKHLIGERGNAHEAPAEREGLPGRMPMGAGFFEKARADSETW 267

[Close]

BLAST of MELO3C020548.2 vs. NCBI nr
Match: OVA06704.1 (Ribosomal protein L2 [Macleaya cordata])

HSP 1 Score: 68.2 bits (165), Expect = 1.0e-08
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 14  NKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKARADSETW 56
           +K LIGE G AH+AP EREGL  RM MGAG FEKARADSETW
Sbjct: 520 SKHLIGERGNAHEAPAEREGLPGRMPMGAGFFEKARADSETW 561

[Close]

BLAST of MELO3C020548.2 vs. NCBI nr
Match: XP_022866432.1 (uncharacterized protein LOC111386211 [Olea europaea var. sylvestris])

HSP 1 Score: 68.2 bits (165), Expect = 1.0e-08
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 14  NKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKARADSETW 56
           +K LIGE G AH+AP EREGL  RM MGAG FEKARADSETW
Sbjct: 212 SKHLIGERGNAHEAPAEREGLPGRMPMGAGFFEKARADSETW 253

[Close]

BLAST of MELO3C020548.2 vs. NCBI nr
Match: XP_025884631.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC101261309, partial [Solanum lycopersicum])

HSP 1 Score: 68.2 bits (165), Expect = 1.0e-08
Identity = 32/45 (71.11%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 11  SHPNKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKARADSETW 56
           +H    LIGE G AH+AP EREGL  RM MGAG FEKARADSETW
Sbjct: 303 AHIQXHLIGERGNAHEAPAEREGLPGRMPMGAGFFEKARADSETW 347

[Close]

BLAST of MELO3C020548.2 vs. NCBI nr
Match: OIT27644.1 (60s ribosomal protein l2, mitochondrial [Nicotiana attenuata])

HSP 1 Score: 66.6 bits (161), Expect = 3.0e-08
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 14  NKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKARADSETW 56
           +K LIGE G AH+AP EREGL  R+ MGAG FEKARADSETW
Sbjct: 227 SKHLIGERGNAHEAPAEREGLPGRIPMGAGFFEKARADSETW 268

[Close]

BLAST of MELO3C020548.2 vs. TAIR10
Match: AT2G07715.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 64.3 bits (155), Expect = 2.7e-11
Identity = 30/39 (76.92%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 17  LIGEWGKAHKAPVEREGLLARMLMGAGLFEKARADSETW 56
           LIGE G  H+AP EREGL  RM MGAG FEKARADSETW
Sbjct: 331 LIGERGNTHEAPTEREGLPGRMPMGAGFFEKARADSETW 369

[Close]

BLAST of MELO3C020548.2 vs. TrEMBL
Match: tr|A0A200Q8E8|A0A200Q8E8_9MAGN (Ribosomal protein L2 OS=Macleaya cordata OX=56857 GN=BVC80_6573g1 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.7e-09
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 14  NKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKARADSETW 56
           +K LIGE G AH+AP EREGL  RM MGAG FEKARADSETW
Sbjct: 520 SKHLIGERGNAHEAPAEREGLPGRMPMGAGFFEKARADSETW 561

[Close]

BLAST of MELO3C020548.2 vs. TrEMBL
Match: tr|A0A1J6J9A5|A0A1J6J9A5_NICAT (60s ribosomal protein l2, mitochondrial OS=Nicotiana attenuata OX=49451 GN=RPL2_1 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.7e-09
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 14  NKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKARADSETW 56
           +K LIGE G AH+AP EREGL  RM MGAG FEKARADSETW
Sbjct: 226 SKHLIGERGNAHEAPAEREGLPGRMPMGAGFFEKARADSETW 267

[Close]

BLAST of MELO3C020548.2 vs. TrEMBL
Match: tr|A0A1J6KG38|A0A1J6KG38_NICAT (60s ribosomal protein l2, mitochondrial OS=Nicotiana attenuata OX=49451 GN=RPL2_3 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-08
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 14  NKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKARADSETW 56
           +K LIGE G AH+AP EREGL  R+ MGAG FEKARADSETW
Sbjct: 227 SKHLIGERGNAHEAPAEREGLPGRIPMGAGFFEKARADSETW 268

[Close]

BLAST of MELO3C020548.2 vs. TrEMBL
Match: tr|V4LI31|V4LI31_EUTSA (Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10013769mg PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.4e-08
Identity = 30/39 (76.92%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 17  LIGEWGKAHKAPVEREGLLARMLMGAGLFEKARADSETW 56
           LIGE G  H+AP EREGL  RM MGAG FEKARADSETW
Sbjct: 331 LIGERGNTHEAPAEREGLQGRMPMGAGFFEKARADSETW 369

[Close]

BLAST of MELO3C020548.2 vs. TrEMBL
Match: tr|F4IMC7|F4IMC7_ARATH (Nucleic acid-binding, OB-fold-like protein OS=Arabidopsis thaliana OX=3702 GN=At2g07715 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.7e-08
Identity = 30/39 (76.92%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 17  LIGEWGKAHKAPVEREGLLARMLMGAGLFEKARADSETW 56
           LIGE G  H+AP EREGL  RM MGAG FEKARADSETW
Sbjct: 331 LIGERGNTHEAPTEREGLPGRMPMGAGFFEKARADSETW 369

The following BLAST results are available for this feature:

BLAST of MELO3C020548.2 vs. NCBI nr


Match Name	E-value	Identity	Description
OIT06415.1	1.0e-08	76.19	60s ribosomal protein l2, mitochondrial [Nicotiana attenuata]	[more]
OVA06704.1	1.0e-08	76.19	Ribosomal protein L2 [Macleaya cordata]	[more]
XP_022866432.1	1.0e-08	76.19	uncharacterized protein LOC111386211 [Olea europaea var. sylvestris]	[more]
XP_025884631.1	1.0e-08	71.11	LOW QUALITY PROTEIN: uncharacterized protein LOC101261309, partial [Solanum lyco...	[more]
OIT27644.1	3.0e-08	73.81	60s ribosomal protein l2, mitochondrial [Nicotiana attenuata]	[more]

BLAST of MELO3C020548.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G07715.1	2.7e-11	76.92	Nucleic acid-binding, OB-fold-like protein	[more]

BLAST of MELO3C020548.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C020548.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A200Q8E8\|A0A200Q8E8_9MAGN	6.7e-09	76.19	Ribosomal protein L2 OS=Macleaya cordata OX=56857 GN=BVC80_6573g1 PE=4 SV=1	[more]
tr\|A0A1J6J9A5\|A0A1J6J9A5_NICAT	6.7e-09	76.19	60s ribosomal protein l2, mitochondrial OS=Nicotiana attenuata OX=49451 GN=RPL2_...	[more]
tr\|A0A1J6KG38\|A0A1J6KG38_NICAT	2.0e-08	73.81	60s ribosomal protein l2, mitochondrial OS=Nicotiana attenuata OX=49451 GN=RPL2_...	[more]
tr\|V4LI31\|V4LI31_EUTSA	7.4e-08	76.92	Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10013769mg PE=...	[more]
tr\|F4IMC7\|F4IMC7_ARATH	9.7e-08	76.92	Nucleic acid-binding, OB-fold-like protein OS=Arabidopsis thaliana OX=3702 GN=At...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020548.2.1	MELO3C020548.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020548.2	Cucumber (Chinese Long) v2	cumedB172
MELO3C020548.2	Melon (DHL92) v3.6.1	medmedB070
MELO3C020548.2	Bottle gourd (USVL1VR-Ls)	lsimedB183
MELO3C020548.2	Watermelon (Charleston Gray)	medwcgB123
MELO3C020548.2	Watermelon (Charleston Gray)	medwcgB141
MELO3C020548.2	Watermelon (97103) v1	medwmB142
MELO3C020548.2	Watermelon (97103) v1	medwmB143
MELO3C020548.2	Silver-seed gourd	carmedB0160
MELO3C020548.2	Silver-seed gourd	carmedB0392
MELO3C020548.2	Silver-seed gourd	carmedB0451
MELO3C020548.2	Silver-seed gourd	carmedB0674
MELO3C020548.2	Cucumber (Chinese Long) v3	cucmedB023
MELO3C020548.2	Watermelon (97103) v2	medwmbB142
MELO3C020548.2	Watermelon (97103) v2	medwmbB136
MELO3C020548.2	Wax gourd	medwgoB164
MELO3C020548.2	Cucumber (Gy14) v2	cgybmedB021
MELO3C020548.2	Cucumber (Gy14) v1	cgymedB240
MELO3C020548.2	Cucumber (Gy14) v1	cgymedB307
MELO3C020548.2	Cucurbita maxima (Rimu)	cmamedB215
MELO3C020548.2	Cucurbita maxima (Rimu)	cmamedB451
MELO3C020548.2	Cucurbita maxima (Rimu)	cmamedB751
MELO3C020548.2	Cucurbita maxima (Rimu)	cmamedB850
MELO3C020548.2	Cucurbita moschata (Rifu)	cmomedB203
MELO3C020548.2	Cucurbita moschata (Rifu)	cmomedB439
MELO3C020548.2	Cucurbita moschata (Rifu)	cmomedB748
MELO3C020548.2	Cucurbita moschata (Rifu)	cmomedB844
MELO3C020548.2	Cucurbita pepo (Zucchini)	cpemedB453
MELO3C020548.2	Cucurbita pepo (Zucchini)	cpemedB561
MELO3C020548.2	Cucurbita pepo (Zucchini)	cpemedB589
MELO3C020548.2	Cucumber (Chinese Long) v2	cumedB023
MELO3C020548.2	Cucurbita pepo (Zucchini)	cpemedB935
MELO3C020548.2	Wild cucumber (PI 183967)	cpimedB024
MELO3C020548.2	Wild cucumber (PI 183967)	cpimedB173