MELO3C020548 (gene) Melon (DHL92) v3.5.1

NameMELO3C020548
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionSensor histidine kinase RcsC
Locationchr12 : 894954 .. 895187 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAATTGAGAGGTTCTCATTGAGCATTCCTAGTCACACGGGAAGAGAGGTCAAATGGCAAGGCCATATGCTCGTTTGGCTCTTCGTAGAGTATAGCTCACATCCAAACAAAGATCTGATTGGGGAATGGGGTAAGGCCCATAAAGCTCCAGTGGAAAGGGAAGGCCTACTAGCCCGTATGCTCATGGGTGCAGGACTCTTTGAAAAAGCGCCGGCTGACTCGGAGACCTAG

mRNA sequence

ATGACAATTGAGAGGTTCTCATTGAGCATTCCTAGTCACACGGGAAGAGAGGTCAAATGGCAAGGCCATATGCTCGTTTGGCTCTTCGTAGAGTATAGCTCACATCCAAACAAAGATCTGATTGGGGAATGGGGTAAGGCCCATAAAGCTCCAGTGGAAAGGGAAGGCCTACTAGCCCGTATGCTCATGGGTGCAGGACTCTTTGAAAAAGCGCCGGCTGACTCGGAGACCTAG

Coding sequence (CDS)

ATGACAATTGAGAGGTTCTCATTGAGCATTCCTAGTCACACGGGAAGAGAGGTCAAATGGCAAGGCCATATGCTCGTTTGGCTCTTCGTAGAGTATAGCTCACATCCAAACAAAGATCTGATTGGGGAATGGGGTAAGGCCCATAAAGCTCCAGTGGAAAGGGAAGGCCTACTAGCCCGTATGCTCATGGGTGCAGGACTCTTTGAAAAAGCGCCGGCTGACTCGGAGACCTAG

Protein sequence

MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKAPADSET*
BLAST of MELO3C020548 vs. TrEMBL
Match: K4CD64_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-11
Identity = 43/77 (55.84%), Postives = 47/77 (61.04%), Query Frame = 1

Query: 1  MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLAR 60
          +TIER SLSIPSHT ++VKWQG                      GK H+AP EREGLL R
Sbjct: 29 VTIERLSLSIPSHTEKDVKWQGK---------------------GKDHEAPAEREGLLCR 84

Query: 61 MLMGAGLFEKAPADSET 78
          M MGAG FEKA ADSET
Sbjct: 89 MPMGAGFFEKARADSET 84

BLAST of MELO3C020548 vs. TAIR10
Match: AT2G07715.1 (AT2G07715.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.0e-08
Identity = 28/38 (73.68%), Postives = 27/38 (71.05%), Query Frame = 1

Query: 40  LIGEWGKAHKAPVEREGLLARMLMGAGLFEKAPADSET 78
           LIGE G  H+AP EREGL  RM MGAG FEKA ADSET
Sbjct: 331 LIGERGNTHEAPTEREGLPGRMPMGAGFFEKARADSET 368

BLAST of MELO3C020548 vs. NCBI nr
Match: gi|695078283|ref|XP_009386524.1| (PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal protein L2, mitochondrial [Musa acuminata subsp. malaccensis])

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-06
Identity = 30/44 (68.18%), Postives = 32/44 (72.73%), Query Frame = 1

Query: 34  SHPNKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKAPADSET 78
           +H    LIGE G AH+AP EREGL  RM MGAG FEKA ADSET
Sbjct: 314 AHIQXHLIGERGNAHEAPAEREGLPGRMRMGAGFFEKARADSET 357

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
K4CD64_SOLLC1.1e-1155.84Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G07715.11.0e-0873.68 Nucleic acid-binding, OB-fold-like protein[more]
Match NameE-valueIdentityDescription
gi|695078283|ref|XP_009386524.1|2.6e-0668.18PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal protein L2, mitochondrial [Musa ac... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020548T1MELO3C020548T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C020548Watermelon (97103) v2mewmbB148
MELO3C020548Watermelon (97103) v2mewmbB153
MELO3C020548Watermelon (97103) v2mewmbB160
MELO3C020548Wax gourdmewgoB152
MELO3C020548Wax gourdmewgoB161
MELO3C020548Melon (DHL92) v3.5.1memeB069
MELO3C020548Melon (DHL92) v3.5.1memeB072
MELO3C020548Cucumber (Gy14) v1cgymeB220
MELO3C020548Cucumber (Gy14) v1cgymeB243
MELO3C020548Cucumber (Gy14) v1cgymeB313
MELO3C020548Cucurbita maxima (Rimu)cmameB194
MELO3C020548Cucurbita maxima (Rimu)cmameB216
MELO3C020548Cucurbita maxima (Rimu)cmameB391
MELO3C020548Cucurbita maxima (Rimu)cmameB666
MELO3C020548Cucurbita maxima (Rimu)cmameB667
MELO3C020548Cucurbita maxima (Rimu)cmameB669
MELO3C020548Cucurbita maxima (Rimu)cmameB750
MELO3C020548Cucurbita moschata (Rifu)cmomeB181
MELO3C020548Cucurbita moschata (Rifu)cmomeB201
MELO3C020548Cucurbita moschata (Rifu)cmomeB382
MELO3C020548Cucurbita moschata (Rifu)cmomeB658
MELO3C020548Cucurbita moschata (Rifu)cmomeB661
MELO3C020548Cucurbita moschata (Rifu)cmomeB662
MELO3C020548Cucurbita moschata (Rifu)cmomeB742
MELO3C020548Wild cucumber (PI 183967)cpimeB025
MELO3C020548Wild cucumber (PI 183967)cpimeB180
MELO3C020548Wild cucumber (PI 183967)cpimeB454
MELO3C020548Cucumber (Chinese Long) v2cumeB028
MELO3C020548Cucumber (Chinese Long) v2cumeB185
MELO3C020548Cucumber (Chinese Long) v2cumeB459
MELO3C020548Watermelon (Charleston Gray)mewcgB128
MELO3C020548Watermelon (Charleston Gray)mewcgB155
MELO3C020548Watermelon (Charleston Gray)mewcgB149
MELO3C020548Watermelon (97103) v1mewmB145
MELO3C020548Watermelon (97103) v1mewmB146
MELO3C020548Watermelon (97103) v1mewmB175
MELO3C020548Cucurbita pepo (Zucchini)cpemeB390
MELO3C020548Cucurbita pepo (Zucchini)cpemeB479
MELO3C020548Cucurbita pepo (Zucchini)cpemeB496
MELO3C020548Bottle gourd (USVL1VR-Ls)lsimeB174
MELO3C020548Bottle gourd (USVL1VR-Ls)lsimeB245
MELO3C020548Cucumber (Gy14) v2cgybmeB023
MELO3C020548Cucumber (Gy14) v2cgybmeB398
MELO3C020548Silver-seed gourdcarmeB0159
MELO3C020548Silver-seed gourdcarmeB0388
MELO3C020548Silver-seed gourdcarmeB0449
MELO3C020548Silver-seed gourdcarmeB0663
MELO3C020548Silver-seed gourdcarmeB0971
MELO3C020548Cucumber (Chinese Long) v3cucmeB025
MELO3C020548Cucumber (Chinese Long) v3cucmeB465