MELO3C020473 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C020473
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTATA-binding related factor (TRF) of subunit 20 of Mediator complex
Locationchr5 : 7632361 .. 7633426 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGTGATCCCTCCAAAATTCAAGACTCCAGATTTTGAGAAGTACAATGGAACCACGTGTCCAAAAGGTCATCTAGTTATGTATTGTCGAAAAATGCCAGCTTACGCTTATGATGATGAATTGTTGATTCATTGCTTCCAAGACGGCTTAGTTGACCTAGCTTCTCGCTGGTACATGCAGTTGGATGGTTCACAAGTGCATAGTTGGAAGGATCTTGCCGATTCATTCTTAAAACAATATAAGTTCAACATTGATATGCCACTCGACCGTCTGGATCTTCAAAGGATGAAAAAAAAAAAAAAGAATGTTGAAACTTTTAAGGAGTATGCACAACGATGGAGAGAAATAGTTGCACAAGTGCGACCTTCCATAACAGACAAAGAATTGACAGCCATGTTCATAAGCATTATTCGGGCTCCATACTATGATAGAATGGTTGGAAGTGCTTCGACTAATTTCTCGGATGTCATAACAATTGGGGAGAGGATTGAATTTGGAGTGAAGAATGGAAGGATCACCGATTCTTCTTCAGATACAAGAAGGATGATGACCCCAAAGAAAAAAGGGAAAGAAATACATGAGATGAGCTCGACTCAAAGAGTAATGCATGTATCCTCATCAACTGGGAGGCAGACAAATTACTCTCCTAGTTATCAGAATTTAGGTAAAAGCCCATTCGATCAGGCAACTAGAGAAATGCAAGGAACAATTGGAAGAAAACCCATTTTGATCCCATACTTATGTCATATACAAAGCATTTGCCTCAACTTTTAAAGAGTCATCAAGTGGCTATCGTACTACAAGAGCCTTTGCAACCACCATATCTTAAGTGGTATGACCCCAATGTAAAATGTGAATATCATGCTGGGGCAGTTGGGCATTTTACGAAGAACTGTTTTCCTTTGAAAGCTAAAGTGCAAAGTCTAGTCAAGGCTAGATGGTTGAAATTCAAGAAGACAGAAGAAGAGCCTAACATTAACCAGAACCCTTTACCAAATCATGAGGGTCCCGCCATAAATGTTGTTGACACATCCACGGAAAGATACAAGAATACACTTTTCTAA

mRNA sequence

ATGTGGTGATCCCTCCAAAATTCAAGACTCCAGATTTTGAGAAGTACAATGGAACCACGTGTCCAAAAGGTCATCTAGTTATGTATTGTCGAAAAATGCCAGCTTACGCTTATGATGATGAATTGTTGATTCATTGCTTCCAAGACGGCTTAGTTGACCTAGCTTCTCGCTGGTACATGCAGTTGGATGGTTCACAAGTGCATAGTTGGAAGGATCTTGCCGATTCATTCTTAAAACAATATAAGTTCAACATTGATATGCCACTCGACCGTCTGGATCTTCAAAGGATGAAAAAAAAAAAAAAGAATGTTGAAACTTTTAAGGAGTATGCACAACGATGGAGAGAAATAGTTGCACAAGTGCGACCTTCCATAACAGACAAAGAATTGACAGCCATGTTCATAAGCATTATTCGGGCTCCATACTATGATAGAATGGTTGGAAGTGCTTCGACTAATTTCTCGGATGTCATAACAATTGGGGAGAGGATTGAATTTGGAGTGAAGAATGGAAGGATCACCGATTCTTCTTCAGATACAAGAAGGATGATGACCCCAAAGAAAAAAGGGAAAGAAATACATGAGATGAGCTCGACTCAAAGAGTAATGCATGTATCCTCATCAACTGGGAGGCAGACAAATTACTCTCCTAGTTATCAGAATTTAGTTGGGCATTTTACGAAGAACTGTTTTCCTTTGAAAGCTAAAGTGCAAAGTCTAGTCAAGGCTAGATGGTTGAAATTCAAGAAGACAGAAGAAGAGCCTAACATTAACCAGAACCCTTTACCAAATCATGAGGGTCCCGCCATAAATGTTGTTGACACATCCACGGAAAGATACAAGAATACACTTTTCTAA

Coding sequence (CDS)

ATGTGGTGATCCCTCCAAAATTCAAGACTCCAGATTTTGAGAAGTACAATGGAACCACGTGTCCAAAAGGTCATCTAGTTATGTATTGTCGAAAAATGCCAGCTTACGCTTATGATGATGAATTGTTGATTCATTGCTTCCAAGACGGCTTAGTTGACCTAGCTTCTCGCTGGTACATGCAGTTGGATGGTTCACAAGTGCATAGTTGGAAGGATCTTGCCGATTCATTCTTAAAACAATATAAGTTCAACATTGATATGCCACTCGACCGTCTGGATCTTCAAAGGATGAAAAAAAAAAAAAAGAATGTTGAAACTTTTAAGGAGTATGCACAACGATGGAGAGAAATAGTTGCACAAGTGCGACCTTCCATAACAGACAAAGAATTGACAGCCATGTTCATAAGCATTATTCGGGCTCCATACTATGATAGAATGGTTGGAAGTGCTTCGACTAATTTCTCGGATGTCATAACAATTGGGGAGAGGATTGAATTTGGAGTGAAGAATGGAAGGATCACCGATTCTTCTTCAGATACAAGAAGGATGATGACCCCAAAGAAAAAAGGGAAAGAAATACATGAGATGAGCTCGACTCAAAGAGTAATGCATGTATCCTCATCAACTGGGAGGCAGACAAATTACTCTCCTAGTTATCAGAATTTAGTTGGGCATTTTACGAAGAACTGTTTTCCTTTGAAAGCTAAAGTGCAAAGTCTAGTCAAGGCTAGATGGTTGAAATTCAAGAAGACAGAAGAAGAGCCTAACATTAACCAGAACCCTTTACCAAATCATGAGGGTCCCGCCATAAATGTTGTTGACACATCCACGGAAAGATACAAGAATACACTTTTCTAA

Protein sequence

VVIPPKFKTPDFEKYNGTTCPKGHLVMYCRKMPAYAYDDELLIHCFQDGLVDLASRWYMQLDGSQVHSWKDLADSFLKQYKFNIDMPLDRLDLQRMKKKKKNVETFKEYAQRWREIVAQVRPSITDKELTAMFISIIRAPYYDRMVGSASTNFSDVITIGERIEFGVKNGRITDSSSDTRRMMTPKKKGKEIHEMSSTQRVMHVSSSTGRQTNYSPSYQNLVGHFTKNCFPLKAKVQSLVKARWLKFKKTEEEPNINQNPLPNHEGPAINVVDTSTERYKNTLF*
Homology
[Close]
BLAST of MELO3C020473 vs. TrEMBL
Match: A0A061F1D6_THECC (Gag-pro-like protein OS=Theobroma cacao GN=TCM_022673 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 8.9e-59
Identity = 117/233 (50.21%), Postives = 160/233 (68.67%), Query Frame = 1 

Query: 1   VVIPPKFKTPDFEKYNGTTCPKGHLVMYCRKMPAYAYDDELLIHCFQDGLVDLASRWYMQ 60
           VVIPPKFK PDFEKY+GT CP  H+ MYCR+M AYA+DD+LLIHCFQD L   A++WY+Q
Sbjct: 18  VVIPPKFKVPDFEKYDGTKCPVTHITMYCRRMAAYAHDDKLLIHCFQDSLTGAAAKWYVQ 77

Query: 61  LDGSQVHSWKDLADSFLKQYKFNIDMPLDRLDLQRMKKKKKNVETFKEYAQRWREIVAQV 120
           LD +++H+WKDLA +F+ QYK   DM  DRL LQ    +KK  E+FKEYAQRWR + +QV
Sbjct: 78  LDRNRIHTWKDLARAFVAQYKHVTDMAPDRLSLQ--NTEKKTTESFKEYAQRWRNVASQV 137

Query: 121 RPSITDKELTAMFISIIRAPYYDRMVGSASTNFSDVITIGERIEFGVKNGRITDSS-SDT 180
           +P +T+KE T MF++ +RAPYY+R+VGSA+ NF+D++  GE IE  +K G+I     ++T
Sbjct: 138 QPPLTEKETTVMFVNTLRAPYYERLVGSATKNFADMVISGEMIETAIKQGKIEGGDMANT 197

Query: 181 RRMMTPKKKGKEIHEMSSTQRVMHVSSSTGRQTNYSP-SYQNLVGHFTKNCFP 232
           R+  T K+K  E   ++S Q   H   +      Y P  Y   V + ++N +P
Sbjct: 198 RKGGTFKRKEGEAQAITSGQ---HQGGTYNPYQPYLPYPYYPAVHNTSQNPYP 245

[Close]
BLAST of MELO3C020473 vs. TrEMBL
Match: A0A061E6J4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_010507 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 4.4e-58
Identity = 110/200 (55.00%), Postives = 148/200 (74.00%), Query Frame = 1 

Query: 1   VVIPPKFKTPDFEKYNGTTCPKGHLVMYCRKMPAYAYDDELLIHCFQDGLVDLASRWYMQ 60
           VVIPPKFK  DFEKY+GT CP  H+ MYCR+M AYA+DD+LLIHCFQD L   A++WY+Q
Sbjct: 162 VVIPPKFKVSDFEKYDGTKCPVTHITMYCRRMAAYAHDDKLLIHCFQDSLTGAAAKWYVQ 221

Query: 61  LDGSQVHSWKDLADSFLKQYKFNIDMPLDRLDLQRMKKKKKNVETFKEYAQRWREIVAQV 120
           LD +++H+WKDLA +F+ QYK   DM  DRL LQ M  +KK  E+FKEYAQRWR + +QV
Sbjct: 222 LDRNRIHTWKDLARAFVAQYKHVTDMAPDRLSLQNM--EKKTTESFKEYAQRWRNVASQV 281

Query: 121 RPSITDKELTAMFISIIRAPYYDRMVGSASTNFSDVITIGERIEFGVKNGRITDSS-SDT 180
           +P +T+KE T MF++ +RAPYY+R+VGSA+ NF+D++  GE IE  +K G+I     ++T
Sbjct: 282 QPPLTEKETTVMFVNTLRAPYYERLVGSATKNFADMVISGEMIETAIKQGKIEGGDMANT 341

Query: 181 RRMMTPKKKGKEIHEMSSTQ 200
           R+  T K+K  E   ++S Q
Sbjct: 342 RKGGTFKRKEGEAQVITSGQ 359

[Close]
BLAST of MELO3C020473 vs. TrEMBL
Match: A0A061E6J4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_010507 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 9.7e-05
Identity = 25/56 (44.64%), Postives = 35/56 (62.50%), Query Frame = 1 

Query: 218 YQNLVGHFTKNCFPLKAKVQSLVKARWLKFKKTEEEPNINQNPLPNHEGPAINVVD 274
           +  + GH  +NC   K KVQ L+KA  L F+K  E+ N+N NPLPNH G  +N ++
Sbjct: 494 HYGIEGHSIENCTAFKHKVQGLIKAGILNFEKKPEQ-NVNNNPLPNHAGAGVNAIE 548


HSP 2 Score: 230.3 bits (586), Expect = 2.9e-57
Identity = 102/172 (59.30%), Postives = 136/172 (79.07%), Query Frame = 1 

Query: 1   VVIPPKFKTPDFEKYNGTTCPKGHLVMYCRKMPAYAYDDELLIHCFQDGLVDLASRWYMQ 60
           VVIPPKFK PDFEKY+GT CP  H+ MYCR+M AYA+DD+LLIHCFQD L   A++WY+Q
Sbjct: 151 VVIPPKFKVPDFEKYDGTKCPVTHITMYCRRMAAYAHDDKLLIHCFQDSLTGAAAKWYVQ 210

Query: 61  LDGSQVHSWKDLADSFLKQYKFNIDMPLDRLDLQRMKKKKKNVETFKEYAQRWREIVAQV 120
           LD +++H+WKDLA +F+ QYK   DM  DRL LQ M  +KK +E+FKEYAQRWR + +QV
Sbjct: 211 LDRNRIHTWKDLARAFVAQYKHVTDMAPDRLSLQNM--EKKTIESFKEYAQRWRNVASQV 270

Query: 121 RPSITDKELTAMFISIIRAPYYDRMVGSASTNFSDVITIGERIEFGVKNGRI 173
           +P +T+KE T +F++ +RAPYY+R+VGSA+ NF+D++  GE IE  +K G+I
Sbjct: 271 QPPLTEKETTVIFVNTLRAPYYERLVGSATKNFADMVISGEMIETAIKQGKI 320

[Close]
BLAST of MELO3C020473 vs. TrEMBL
Match: A0A0L9VSW4_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g120500 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.1e-56
Identity = 110/202 (54.46%), Postives = 140/202 (69.31%), Query Frame = 1 

Query: 1   VVIPPKFKTPDFEKYNGTTCPKGHLVMYCRKMPAYAYDDELLIHCFQDGLVDLASRWYMQ 60
           V+IP KFK P+FEKY G TCPK HL MYCRKM AYAYDD+LLIH FQD L  +A  WY  
Sbjct: 192 VMIPHKFKAPEFEKYKGNTCPKSHLTMYCRKMVAYAYDDKLLIHFFQDSLAGVALNWYTH 251

Query: 61  LDGSQVHSWKDLADSFLKQYKFNIDMPLDRLDLQRMKKKKKNVETFKEYAQRWREIVAQV 120
           L+ S++  W DLAD+F+KQY +N  +  DRL LQ M K+    ETFK YAQRWRE+ AQV
Sbjct: 252 LEPSRIRCWADLADAFVKQYIYNTHIAPDRLQLQNMSKRDN--ETFKGYAQRWRELAAQV 311

Query: 121 RPSITDKELTAMFISIIRAPYYDRMVGSASTNFSDVITIGERIEFGVKNGRITDSSSDTR 180
            P + D+E+ AMF++ +  P+Y+ MVG+ S NF+D+I IGERIE GVK+G+I  SS  T 
Sbjct: 312 EPPLYDREVVAMFVNTLHPPFYEHMVGNVSANFADIIIIGERIEIGVKSGKIAYSSPATA 371

Query: 181 RMMTP-----KKKGKEIHEMSS 198
               P     KKK  ++H +S+
Sbjct: 372 NYKKPNFNTGKKKEGDVHAVSA 391

[Close]
BLAST of MELO3C020473 vs. TrEMBL
Match: A0A061DM48_THECC (Gag-pro-like protein OS=Theobroma cacao GN=TCM_002389 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.1e-56
Identity = 102/172 (59.30%), Postives = 135/172 (78.49%), Query Frame = 1 

Query: 1   VVIPPKFKTPDFEKYNGTTCPKGHLVMYCRKMPAYAYDDELLIHCFQDGLVDLASRWYMQ 60
           VVIPPKFK PDFEKY+GT CP  H+ MYCR+M AYA+DD+LLIHCFQD L   A++WY+Q
Sbjct: 170 VVIPPKFKVPDFEKYDGTKCPVTHITMYCRRMVAYAHDDKLLIHCFQDSLTGAAAKWYVQ 229

Query: 61  LDGSQVHSWKDLADSFLKQYKFNIDMPLDRLDLQRMKKKKKNVETFKEYAQRWREIVAQV 120
           LD +++H+WKDLA +F+ QYK   DM  DRL LQ M+KK    E+FKEYAQRWR + +QV
Sbjct: 230 LDRNRIHTWKDLARAFIAQYKHVTDMAPDRLSLQNMEKKA--TESFKEYAQRWRNVASQV 289

Query: 121 RPSITDKELTAMFISIIRAPYYDRMVGSASTNFSDVITIGERIEFGVKNGRI 173
           +P +T+KE T MF++ +RAPYY+R+VGSA+ NF++++  GE IE  +K G+I
Sbjct: 290 QPPLTEKETTVMFVNTLRAPYYERLVGSATKNFANMVISGEMIETAIKQGKI 339

[Close]
BLAST of MELO3C020473 vs. NCBI nr
Match: gi|659122237|ref|XP_008461036.1| (PREDICTED: uncharacterized protein LOC103499741 [Cucumis melo])

HSP 1 Score: 399.8 bits (1026), Expect = 3.9e-108
Identity = 204/293 (69.62%), Postives = 229/293 (78.16%), Query Frame = 1 

Query: 1   VVIPPKFKTPDFEKYNGTTCPKGHLVMYCRKMPAYAYDDELLIHCFQDGLVDLASRWYMQ 60
           VVI PKFKTPDFEKYNGTTCPK HLVMYCRK+  YA+DD+LLIHCFQD LV   SRWYMQ
Sbjct: 132 VVISPKFKTPDFEKYNGTTCPKSHLVMYCRKISVYAHDDKLLIHCFQDSLVGSTSRWYMQ 191

Query: 61  LDGSQVHSWKDLADSFLKQYKFNIDMPLDRLDLQRMKKKKKNVETFKEYAQRWREIVAQV 120
           LDGSQVH WKDLA+SFLKQYK+NIDM  DRLDLQRM  +KKNVE FKEYAQRWR++  QV
Sbjct: 192 LDGSQVHRWKDLANSFLKQYKYNIDMAPDRLDLQRM--EKKNVENFKEYAQRWRDLATQV 251

Query: 121 RPSITDKELTAMFISIIRAPYYDRMVGSASTNFSDVITIGERIEFGVKNGRITDSSSDTR 180
           +P +TDKEL AMFI+ IRAPYYD MVGSASTNFSDVITI ERIEFGVKNG+I DSSS+ R
Sbjct: 252 QPPLTDKELIAMFINTIRAPYYDIMVGSASTNFSDVITIEERIEFGVKNGKIIDSSSERR 311

Query: 181 RMMTPKKKGKEIHEMSSTQRVMHVSSSTGRQTN-------YSPS-----YQNLVGHFTKN 240
           RMMT KKK ++  ++       H  +   ++         Y P+     +   VGH  +N
Sbjct: 312 RMMTSKKKWEKYTKLLPQLLKSHQVAIVPQEPLQPPYPKWYDPNARCEYHAGTVGHSIEN 371

Query: 241 CFPLKAKVQSLVKARWLKFKKTEEEPNINQNPLPNHEGPAINVVDTSTERYKN 282
           CFPLKAKVQSLVKA WLKFKKT EE ++NQNPLPNHEGPAINVVDT TER KN
Sbjct: 372 CFPLKAKVQSLVKAGWLKFKKTGEELDVNQNPLPNHEGPAINVVDTFTERNKN 422

[Close]
BLAST of MELO3C020473 vs. NCBI nr
Match: gi|659130442|ref|XP_008465174.1| (PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo])

HSP 1 Score: 331.6 bits (849), Expect = 1.3e-87
Identity = 160/195 (82.05%), Postives = 173/195 (88.72%), Query Frame = 1 

Query: 1   VVIPPKFKTPDFEKYNGTTCPKGHLVMYCRKMPAYAYDDELLIHCFQDGLVDLASRWYMQ 60
           VVIPPKFKTPDFEKYNGTTCPK HLVMYC+KM AYA+DD+LLIHCFQD LV   SRWYMQ
Sbjct: 145 VVIPPKFKTPDFEKYNGTTCPKSHLVMYCQKMSAYAHDDKLLIHCFQDSLVGPTSRWYMQ 204

Query: 61  LDGSQVHSWKDLADSFLKQYKFNIDMPLDRLDLQRMKKKKKNVETFKEYAQRWREIVAQV 120
           LDGSQVH WKDLADSFLKQY +NIDM  DRLDLQRM  +KKNVETFKEYAQRWRE+  QV
Sbjct: 205 LDGSQVHRWKDLADSFLKQYNYNIDMTPDRLDLQRM--EKKNVETFKEYAQRWRELATQV 264

Query: 121 RPSITDKELTAMFISIIRAPYYDRMVGSASTNFSDVITIGERIEFGVKNGRITDSSSDTR 180
           +P +TDKEL AMFI+ +RAPYYDRMVGSASTNFSDVITIGE IEFGVKNGRI D SS+ R
Sbjct: 265 QPPLTDKELMAMFINTLRAPYYDRMVGSASTNFSDVITIGEMIEFGVKNGRIFDPSSEIR 324

Query: 181 RMMTPKKKGKEIHEM 196
           RMMTPKKK +EIHE+
Sbjct: 325 RMMTPKKKEEEIHEL 337

[Close]
BLAST of MELO3C020473 vs. NCBI nr
Match: gi|659102853|ref|XP_008452348.1| (PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo])

HSP 1 Score: 324.3 bits (830), Expect = 2.1e-85
Identity = 160/198 (80.81%), Postives = 174/198 (87.88%), Query Frame = 1 

Query: 1   VVIPPKFKTPDFEKYNGTTCPKGHLVMYCRKMPAYAYDDELLIHCFQDGLVDLASRWYMQ 60
           VVIP KFK PDFEKYNGTTCPK HLVMYCRKM  YA+DD+LLIH FQD LV  ASRWYMQ
Sbjct: 152 VVIPLKFKIPDFEKYNGTTCPKSHLVMYCRKMSTYAHDDKLLIHRFQDSLVGPASRWYMQ 211

Query: 61  LDGSQVHSWKDLADSFLKQYKFNIDMPLDRLDLQRMKKKKKNVETFKEYAQRWREIVAQV 120
            DGSQVH W DLADSFLKQYK+NIDM  D LDLQRM  +K+NVETFKEYAQRWRE+VAQV
Sbjct: 212 FDGSQVHRWNDLADSFLKQYKYNIDMAPDHLDLQRM--EKRNVETFKEYAQRWRELVAQV 271

Query: 121 RPSITDKELTAMFISIIRAPYYDRMVGSASTNFSDVITIGERIEFGVKNGRITDSSSDTR 180
           +P +TDKELTA+FI+ +RAPYYDRMVGSASTNFSDVI IGERIEFGVKN RITD SS+TR
Sbjct: 272 QPPLTDKELTAIFINTLRAPYYDRMVGSASTNFSDVIRIGERIEFGVKNERITDFSSETR 331

Query: 181 RMMTPKKKGKEIHEMSST 199
           RMMT KKK +EIHE+SST
Sbjct: 332 RMMTLKKKEEEIHELSST 347

[Close]
BLAST of MELO3C020473 vs. NCBI nr
Match: gi|659113185|ref|XP_008456442.1| (PREDICTED: uncharacterized protein LOC103496385 [Cucumis melo])

HSP 1 Score: 312.8 bits (800), Expect = 6.3e-82
Identity = 150/188 (79.79%), Postives = 165/188 (87.77%), Query Frame = 1 

Query: 1   VVIPPKFKTPDFEKYNGTTCPKGHLVMYCRKMPAYAYDDELLIHCFQDGLVDLASRWYMQ 60
           VVIPPKFKTPDFEKYNGTTCPK HL+MYCRKM AYA+DD+LLIHCFQD LV   S WYMQ
Sbjct: 90  VVIPPKFKTPDFEKYNGTTCPKSHLIMYCRKMSAYAHDDKLLIHCFQDSLVGPTSHWYMQ 149

Query: 61  LDGSQVHSWKDLADSFLKQYKFNIDMPLDRLDLQRMKKKKKNVETFKEYAQRWREIVAQV 120
           LD SQVH WKDLADSFLKQYK+NIDM  DRL+LQRM  +KKNVETFKEYAQRWRE+  QV
Sbjct: 150 LDCSQVHRWKDLADSFLKQYKYNIDMAPDRLNLQRM--EKKNVETFKEYAQRWRELATQV 209

Query: 121 RPSITDKELTAMFISIIRAPYYDRMVGSASTNFSDVITIGERIEFGVKNGRITDSSSDTR 180
           +P +TDKEL AMFI+ +RAPYYDRMVGS S NFSDVITIGERIEF VKNGRI+D +++ R
Sbjct: 210 QPPLTDKELMAMFINTLRAPYYDRMVGSVSINFSDVITIGERIEFEVKNGRISDPAAEIR 269

Query: 181 RMMTPKKK 189
           RMMTPKKK
Sbjct: 270 RMMTPKKK 275

[Close]
BLAST of MELO3C020473 vs. NCBI nr
Match: gi|659114599|ref|XP_008457136.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496882 [Cucumis melo])

HSP 1 Score: 307.4 bits (786), Expect = 2.7e-80
Identity = 151/188 (80.32%), Postives = 164/188 (87.23%), Query Frame = 1 

Query: 1   VVIPPKFKTPDFEKYNGTTCPKGHLVMYCRKMPAYAYDDELLIHCFQDGLVDLASRWYMQ 60
           VVIPPKFKTPDFEKYNGTTCPK HLVMYCRKM AYA+DD+LLI CFQD LV  ASRWYMQ
Sbjct: 148 VVIPPKFKTPDFEKYNGTTCPKSHLVMYCRKMSAYAHDDKLLICCFQDSLVGPASRWYMQ 207

Query: 61  LDGSQVHSWKDLADSFLKQYKFNIDMPLDRLDLQRMKKKKKNVETFKEYAQRWREIVAQV 120
            DGSQVH WKDLADSFL++YK+N DM  DRLDLQRM+KK+   ETFKEYAQRWRE+ AQV
Sbjct: 208 FDGSQVHRWKDLADSFLRKYKYNNDMAPDRLDLQRMEKKE--CETFKEYAQRWRELAAQV 267

Query: 121 RPSITDKELTAMFISIIRAPYYDRMVGSASTNFSDVITIGERIEFGVKNGRITDSSSDTR 180
           +P +T KEL AMFI+ +RAPYYDRMVGSASTNFSDVITIGERIEFGVKN RI D +S  R
Sbjct: 268 QPPLTFKELMAMFINTLRAPYYDRMVGSASTNFSDVITIGERIEFGVKNERIFDPASAIR 327

Query: 181 RMMTPKKK 189
           RMMTPKKK
Sbjct: 328 RMMTPKKK 333

The following BLAST results are available for this feature:
BLAST of MELO3C020473 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A061F1D6_THECC8.9e-5950.21Gag-pro-like protein OS=Theobroma cacao GN=TCM_022673 PE=4 SV=1[more]
A0A061E6J4_THECC4.4e-5855.00Uncharacterized protein OS=Theobroma cacao GN=TCM_010507 PE=4 SV=1[more]
A0A061E6J4_THECC9.7e-0544.64Uncharacterized protein OS=Theobroma cacao GN=TCM_010507 PE=4 SV=1[more]
A0A0L9VSW4_PHAAN1.1e-5654.46Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g120500 PE=4 SV=1[more]
A0A061DM48_THECC1.1e-5659.30Gag-pro-like protein OS=Theobroma cacao GN=TCM_002389 PE=4 SV=1[more]
BLAST of MELO3C020473 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659122237|ref|XP_008461036.1|3.9e-10869.62PREDICTED: uncharacterized protein LOC103499741 [Cucumis melo][more]
gi|659130442|ref|XP_008465174.1|1.3e-8782.05PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo][more]
gi|659102853|ref|XP_008452348.1|2.1e-8580.81PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo][more]
gi|659113185|ref|XP_008456442.1|6.3e-8279.79PREDICTED: uncharacterized protein LOC103496385 [Cucumis melo][more]
gi|659114599|ref|XP_008457136.1|2.7e-8080.32PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496882 [Cucumis me... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020473T1MELO3C020473T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 50..134
score: 7.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C020473Wax gourdmewgoB450
MELO3C020473Wax gourdmewgoB480
MELO3C020473Melon (DHL92) v3.5.1memeB147
MELO3C020473Cucumber (Gy14) v1cgymeB434
MELO3C020473Cucurbita maxima (Rimu)cmameB234
MELO3C020473Cucurbita maxima (Rimu)cmameB338
MELO3C020473Cucurbita maxima (Rimu)cmameB760
MELO3C020473Cucurbita maxima (Rimu)cmameB845
MELO3C020473Cucurbita moschata (Rifu)cmomeB221
MELO3C020473Cucurbita moschata (Rifu)cmomeB331
MELO3C020473Cucurbita moschata (Rifu)cmomeB752
MELO3C020473Cucurbita moschata (Rifu)cmomeB828
MELO3C020473Wild cucumber (PI 183967)cpimeB226
MELO3C020473Watermelon (Charleston Gray)mewcgB385
MELO3C020473Watermelon (Charleston Gray)mewcgB388
MELO3C020473Watermelon (97103) v1mewmB411
MELO3C020473Watermelon (97103) v1mewmB413
MELO3C020473Watermelon (97103) v1mewmB430
MELO3C020473Cucurbita pepo (Zucchini)cpemeB137
MELO3C020473Cucurbita pepo (Zucchini)cpemeB310
MELO3C020473Cucurbita pepo (Zucchini)cpemeB578
MELO3C020473Cucurbita pepo (Zucchini)cpemeB804
MELO3C020473Bottle gourd (USVL1VR-Ls)lsimeB025
MELO3C020473Bottle gourd (USVL1VR-Ls)lsimeB360
MELO3C020473Cucumber (Gy14) v2cgybmeB195
MELO3C020473Silver-seed gourdcarmeB0233
MELO3C020473Silver-seed gourdcarmeB0238
MELO3C020473Silver-seed gourdcarmeB0939
MELO3C020473Silver-seed gourdcarmeB1046
MELO3C020473Cucumber (Chinese Long) v3cucmeB230
MELO3C020473Cucumber (Chinese Long) v3cucmeB232
MELO3C020473Watermelon (97103) v2mewmbB384
MELO3C020473Watermelon (97103) v2mewmbB388
MELO3C020473Watermelon (97103) v2mewmbB405