MELO3C020472 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020472
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Reverse transcriptase, putative
Location	chr5 : 7718322 .. 7718508 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCAGAACAAGGTTCGACCACATAGGCACTTCAATCCTACCTTGAAGGAAGTTGTCAAGAAAGAGGTCTTGAAGCTCAAAGACGACATCGAGATTATCTATCTGGTACTACATAACACTTGTATAAGACCTATTCACGTGGAATCCAAGAAGTTCGATATGACCATTGTGGAAAATAGCCAAG

mRNA sequence

ATGGCTCAGAACAAGGTTCGACCACATAGGCACTTCAATCCTACCTTGAAGGAAGTTGTCAAGAAAGAGGTCTTGAAGCTCAAAGACGACATCGAGATTATCTATCTGGTACTACATAACACTTGTATAAGACCTATTCACGTGGAATCCAAGAAGTTCGATATGACCATTGTGGAAAATAGCCAAG

Coding sequence (CDS)

ATGGCTCAGAACAAGGTTCGACCACATAGGCACTTCAATCCTACCTTGAAGGAAGTTGTCAAGAAAGAGGTCTTGAAGCTCAAAGACGACATCGAGATTATCTATCTGGTACTACATAACACTTGTATAAGACCTATTCACGTGGAATCCAAGAAGTTCGATATGACCATTGTGGAAAATAGCCAAG

Protein sequence

MAQNKVRPHRHFNPTLKEVVKKEVLKLKDDIEIIYLVLHNTCIRPIHVESKKFDMTIVENSQ

Homology

[Close]

BLAST of MELO3C020472 vs. TrEMBL
Match: A0A072UTM0_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_3g012210 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.3e-06
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 1


Query: 6   VRPHRHFNPTLKEVVKKEVLKLKDDIEIIYLVLHNTCIRPIHVESKKFDMTIVENSQ 63
           V+P R  NPT+KEVVKKEVLKL  D  +IY +  +T + P+HV  KK  MT+V N +
Sbjct: 443 VQPQRRLNPTMKEVVKKEVLKLL-DAGMIYPISESTWVSPVHVVPKKGGMTVVANEK 498

[Close]

BLAST of MELO3C020472 vs. TrEMBL
Match: Q9FZN9_ARATH (Retroelement pol polyprotein-like OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.3e-06
Identity = 28/59 (47.46%), Postives = 39/59 (66.10%), Query Frame = 1


Query: 4    NKVRPHRHFNPTLKEVVKKEVLKLKDDIEIIYLVLHNTCIRPIHVESKKFDMTIVENSQ 63
            + + P R  NP LKEVVKKE+LKL  D  +IY +  +T + P+H   KK  MT+V+NS+
Sbjct: 958  SSIEPQRRLNPNLKEVVKKEILKLL-DAGVIYPISDSTWVSPVHYVPKKGGMTVVKNSK 1015

[Close]

BLAST of MELO3C020472 vs. TrEMBL
Match: Q9LPB1_ARATH (T32E20.9 OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.3e-06
Identity = 28/59 (47.46%), Postives = 39/59 (66.10%), Query Frame = 1


Query: 4   NKVRPHRHFNPTLKEVVKKEVLKLKDDIEIIYLVLHNTCIRPIHVESKKFDMTIVENSQ 63
           + + P R  NP LKEVVKKE+LKL  D  +IY +  +T + P+H   KK  MT+V+NS+
Sbjct: 808 SSIEPQRRLNPNLKEVVKKEILKLL-DAGVIYPISDSTWVSPVHCVPKKGGMTVVKNSK 865

[Close]

BLAST of MELO3C020472 vs. NCBI nr
Match: gi|922377192|ref|XP_013458930.1| (hypothetical protein MTR_3g012210 [Medicago truncatula])

HSP 1 Score: 58.5 bits (140), Expect = 4.7e-06
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 1


Query: 6   VRPHRHFNPTLKEVVKKEVLKLKDDIEIIYLVLHNTCIRPIHVESKKFDMTIVENSQ 63
           V+P R  NPT+KEVVKKEVLKL  D  +IY +  +T + P+HV  KK  MT+V N +
Sbjct: 443 VQPQRRLNPTMKEVVKKEVLKLL-DAGMIYPISESTWVSPVHVVPKKGGMTVVANEK 498

The following BLAST results are available for this feature:

BLAST of MELO3C020472 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A072UTM0_MEDTR	3.3e-06	52.63	Uncharacterized protein OS=Medicago truncatula GN=MTR_3g012210 PE=4 SV=1	[more]
Q9FZN9_ARATH	7.3e-06	47.46	Retroelement pol polyprotein-like OS=Arabidopsis thaliana PE=4 SV=1	[more]
Q9LPB1_ARATH	7.3e-06	47.46	T32E20.9 OS=Arabidopsis thaliana PE=4 SV=1	[more]

BLAST of MELO3C020472 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|922377192\|ref\|XP_013458930.1\|	4.7e-06	52.63	hypothetical protein MTR_3g012210 [Medicago truncatula]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020472T1	MELO3C020472T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020472	Cucurbita pepo (Zucchini)	cpemeB137
MELO3C020472	Cucurbita pepo (Zucchini)	cpemeB310
MELO3C020472	Cucurbita pepo (Zucchini)	cpemeB578
MELO3C020472	Cucurbita pepo (Zucchini)	cpemeB804
MELO3C020472	Bottle gourd (USVL1VR-Ls)	lsimeB025
MELO3C020472	Bottle gourd (USVL1VR-Ls)	lsimeB360
MELO3C020472	Cucumber (Gy14) v2	cgybmeB195
MELO3C020472	Silver-seed gourd	carmeB0233
MELO3C020472	Silver-seed gourd	carmeB0238
MELO3C020472	Silver-seed gourd	carmeB0939
MELO3C020472	Silver-seed gourd	carmeB1046
MELO3C020472	Cucumber (Chinese Long) v3	cucmeB230
MELO3C020472	Cucumber (Chinese Long) v3	cucmeB232
MELO3C020472	Watermelon (97103) v2	mewmbB384
MELO3C020472	Watermelon (97103) v2	mewmbB388
MELO3C020472	Watermelon (97103) v2	mewmbB405
MELO3C020472	Wax gourd	mewgoB450
MELO3C020472	Wax gourd	mewgoB480
MELO3C020472	Melon (DHL92) v3.5.1	memeB147
MELO3C020472	Cucumber (Gy14) v1	cgymeB434
MELO3C020472	Cucurbita maxima (Rimu)	cmameB234
MELO3C020472	Cucurbita maxima (Rimu)	cmameB338
MELO3C020472	Cucurbita maxima (Rimu)	cmameB760
MELO3C020472	Cucurbita maxima (Rimu)	cmameB845
MELO3C020472	Cucurbita moschata (Rifu)	cmomeB221
MELO3C020472	Cucurbita moschata (Rifu)	cmomeB331
MELO3C020472	Cucurbita moschata (Rifu)	cmomeB752
MELO3C020472	Cucurbita moschata (Rifu)	cmomeB828
MELO3C020472	Wild cucumber (PI 183967)	cpimeB226
MELO3C020472	Watermelon (Charleston Gray)	mewcgB385
MELO3C020472	Watermelon (Charleston Gray)	mewcgB388
MELO3C020472	Watermelon (97103) v1	mewmB411
MELO3C020472	Watermelon (97103) v1	mewmB413
MELO3C020472	Watermelon (97103) v1	mewmB430