MELO3C020471 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C020471
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRadixin
Locationchr5 : 7783280 .. 7783618 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCGTAGAAGTGAACGATGCTTAGGATCGAGGTTGAAAAATATTAAATCAAACAAGGATGATCCTATTCTGATCGATGATAATACAGAGGTATATTTCTAACTTTCTGAATTTGAATTTTAAATGGTAGAAATAGTTAAAAAAAAAAAAAAAATATAATATGTGTATATATGGTAGGAGGATGTAAAAAATGAAGAACCAATCCAATACGAACCACTACAAACTATATATCCAGAAGATGATGAAGAAGAGTTAAGAGGACCTACAGGTACACAGATTGTTGTGTACCAGGATCAGAAGTTTTTGAAAAAGAATGTGGTGTTTGAAACACCATAA

mRNA sequence

ATGGTTCGTAGAAGTGAACGATGCTTAGGATCGAGGTTGAAAAATATTAAATCAAACAAGGATGATCCTATTCTGATCGATGATAATACAGAGGAGGATGTAAAAAATGAAGAACCAATCCAATACGAACCACTACAAACTATATATCCAGAAGATGATGAAGAAGAGTTAAGAGGACCTACAGGTACACAGATTGTTGTGTACCAGGATCAGAAGTTTTTGAAAAAGAATGTGGTGTTTGAAACACCATAA

Coding sequence (CDS)

ATGGTTCGTAGAAGTGAACGATGCTTAGGATCGAGGTTGAAAAATATTAAATCAAACAAGGATGATCCTATTCTGATCGATGATAATACAGAGGAGGATGTAAAAAATGAAGAACCAATCCAATACGAACCACTACAAACTATATATCCAGAAGATGATGAAGAAGAGTTAAGAGGACCTACAGGTACACAGATTGTTGTGTACCAGGATCAGAAGTTTTTGAAAAAGAATGTGGTGTTTGAAACACCATAA

Protein sequence

MVRRSERCLGSRLKNIKSNKDDPILIDDNTEEDVKNEEPIQYEPLQTIYPEDDEEELRGPTGTQIVVYQDQKFLKKNVVFETP*
Homology
[Close]
BLAST of MELO3C020471 vs. NCBI nr
Match: gi|659129589|ref|XP_008464749.1| (PREDICTED: uncharacterized protein LOC103502558 isoform X2 [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 5.3e-13
Identity = 35/53 (66.04%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 11  SRLKNIKSNKDDPILIDDNTEEDVKNEEPIQYEPLQTIYPEDDEEELRGPTGT 64
           ++LK IKS+KD+ ILI+DN EED++NEEP+ Y+P+QTIYP+DDEEEL+G T T
Sbjct: 108 NKLKKIKSSKDNSILIEDNEEEDIRNEEPLDYQPIQTIYPKDDEEELQGTTDT 160

[Close]
BLAST of MELO3C020471 vs. NCBI nr
Match: gi|659118466|ref|XP_008459134.1| (PREDICTED: uncharacterized protein LOC103498336 [Cucumis melo])

HSP 1 Score: 64.7 bits (156), Expect = 8.8e-08
Identity = 35/60 (58.33%), Postives = 39/60 (65.00%), Query Frame = 1 

Query: 1  MVRRSERCLGSRLKNIKSNKDDPILIDDNTEEDVKNEEPIQYEPLQTIYPEDDEEELRGP 60
          MVRRSERCLG +LKNIKSNKDDPI+I DNTE    NE    Y+    +  E DEE    P
Sbjct: 1  MVRRSERCLGLQLKNIKSNKDDPIVIKDNTE---INEGATSYDVPLNLLSESDEESFGDP 57

The following BLAST results are available for this feature:
BLAST of MELO3C020471 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659129589|ref|XP_008464749.1|5.3e-1366.04PREDICTED: uncharacterized protein LOC103502558 isoform X2 [Cucumis melo][more]
gi|659118466|ref|XP_008459134.1|8.8e-0858.33PREDICTED: uncharacterized protein LOC103498336 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020471T1MELO3C020471T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C020471Silver-seed gourdcarmeB0233
MELO3C020471Silver-seed gourdcarmeB0238
MELO3C020471Silver-seed gourdcarmeB0939
MELO3C020471Silver-seed gourdcarmeB1046
MELO3C020471Cucumber (Chinese Long) v3cucmeB230
MELO3C020471Cucumber (Chinese Long) v3cucmeB232
MELO3C020471Watermelon (97103) v2mewmbB384
MELO3C020471Watermelon (97103) v2mewmbB388
MELO3C020471Watermelon (97103) v2mewmbB405
MELO3C020471Wax gourdmewgoB450
MELO3C020471Wax gourdmewgoB480
MELO3C020471Melon (DHL92) v3.5.1memeB147
MELO3C020471Cucumber (Gy14) v1cgymeB434
MELO3C020471Cucurbita maxima (Rimu)cmameB234
MELO3C020471Cucurbita maxima (Rimu)cmameB338
MELO3C020471Cucurbita maxima (Rimu)cmameB760
MELO3C020471Cucurbita maxima (Rimu)cmameB845
MELO3C020471Cucurbita moschata (Rifu)cmomeB221
MELO3C020471Cucurbita moschata (Rifu)cmomeB331
MELO3C020471Cucurbita moschata (Rifu)cmomeB752
MELO3C020471Cucurbita moschata (Rifu)cmomeB828
MELO3C020471Wild cucumber (PI 183967)cpimeB226
MELO3C020471Watermelon (Charleston Gray)mewcgB385
MELO3C020471Watermelon (Charleston Gray)mewcgB388
MELO3C020471Watermelon (97103) v1mewmB411
MELO3C020471Watermelon (97103) v1mewmB413
MELO3C020471Watermelon (97103) v1mewmB430
MELO3C020471Cucurbita pepo (Zucchini)cpemeB137
MELO3C020471Cucurbita pepo (Zucchini)cpemeB310
MELO3C020471Cucurbita pepo (Zucchini)cpemeB578
MELO3C020471Cucurbita pepo (Zucchini)cpemeB804
MELO3C020471Bottle gourd (USVL1VR-Ls)lsimeB025
MELO3C020471Bottle gourd (USVL1VR-Ls)lsimeB360
MELO3C020471Cucumber (Gy14) v2cgybmeB195