MELO3C020438.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020438.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	transmembrane protein 208 homolog
Location	chr05 : 8602944 .. 8604311 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAGCCAACCTCTGGTGATGATAGTGAACTTCTAGATGGTGGATTTGATATGAGTACTGGTGGAATTTGTGGGTATGTCTACCATTACATGTCAGTTTTATGCATGTTTTTATCTCCATTACATAAAGTATAATTGTTAAGTACAAACCTGGCATATTTAATTGTTCTGTGACCCAAGTTTAAGGTGAACTGTTGCTTTAAAACTAAGAATTGGTATGATTTTGTTGACCAAATATCAAATTTCATGAGGAAGCTGAAGCTATTTTTCTTGATCGTCGTTCTAAAATTCAATCTAAAATGCTTGAAATGGAAGAAACTAGTGATTTGCTTGGCCTAACTCTCATTTCTTCCCACTCTTCAAAAGCTCGGCACCTTCAAAGTTAGCCCTTTTGTTGAGTCTTTGCTCTACGATCTCTGAGTGCCTTTTTCTTCTTCATCTTTTAAATACTGATCATACCAACCTACAATTGTGGCATATTATTCTATTTCAGTTTCCTCTGTAGTTATCATTTCCTTTTCGCCTGAATTTCGTGACTAAATTGATTTTCATTTATAGAATTGTAAATTGATATTTAGTATGATTGTCTATTGGTTTAATAACTCTCCATAAGGGCAATATACACAAAAATCACGGTTGTTTGTTCATTTGCCTTACTGGATCTTTCAATTTTCTTTCTTGAACATATTTCAAATTGGATAGTGATATATAAGCAAGCTTGCAGCTTCAAAAGGAATAGGCTTATTGGGTTTTTAAGTTTTCTGGGAAATGGTTCTGCTCCACTTGTTGCTTTGATCAATTGATGTGTTTATCATCACTAATGTGACAGAACAATTCTATGGTAATGTTTTTGGCCTACATAATATTAAGTGGTTTTGTGTGGGGTTTTTCCATTCAGTGGCAAAGGTGGTGTTTATAATATGGATGAAGTAACTGAAAGGAACAGATGGCTTTTAAGTAACTCTTTTTCTTCTTTTAATCGTTTTATGAATCTTGTTCTATCACCTGCTTTTTTCTGTGTAAAACTAAGCATCCCTTCTCTCATTTCAACCTTTCTTTTTTAGTCAGTAATTGGTGATCTCTTATGTAACAAGCTTTTTCTGTTCGTGGTTCTTCCTTGTTCTTTTATCGAAAAAATTATGGATTGACTTTAAAGAAGAGGTTGGAATCCAATATGGCTAGCCTTCCATCTGTCAATGATTTCTTAACATTTCAATAATTAATCGAAACTTCTTGATGGTTTGTCTTGTTTTTTGCAGCTACATGCATGATGTGATCTACATTACAAGCTTTCTGCAAATAATGTCAATCCTCTCCGGGAAGTTTTGGTACATCTACCTTGTGGTAAGGTCTATTCACTTTTGA

mRNA sequence

ATGGCAAAGCCAACCTCTGGTGATGATAGTGAACTTCTAGATGGTGGATTTGATATGAGTACTGGTGGAATTTGTGGCTACATGCATGATGTGATCTACATTACAAGCTTTCTGCAAATAATGTCAATCCTCTCCGGGAAGTTTTGGTACATCTACCTTGTGGTAAGGTCTATTCACTTTTGA

Coding sequence (CDS)

ATGGCAAAGCCAACCTCTGGTGATGATAGTGAACTTCTAGATGGTGGATTTGATATGAGTACTGGTGGAATTTGTGGCTACATGCATGATGTGATCTACATTACAAGCTTTCTGCAAATAATGTCAATCCTCTCCGGGAAGTTTTGGTACATCTACCTTGTGGTAAGGTCTATTCACTTTTGA

Protein sequence

MAKPTSGDDSELLDGGFDMSTGGICGYMHDVIYITSFLQIMSILSGKFWYIYLVVRSIHF

Homology

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BLAST of MELO3C020438.2 vs. NCBI nr
Match: XP_022946520.1 (transmembrane protein 208 homolog [Cucurbita moschata] >XP_022999772.1 transmembrane protein 208 homolog [Cucurbita maxima])

HSP 1 Score: 104.0 bits (258), Expect = 1.8e-19
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1   MAKPTSGDDSELLDGGFDMSTGGICGYMHDVIYITSFLQIMSILSGKFWYIYLVV 56
           MA PT GDD ELLDGGFDMSTGGICGYMHDVIYITSF+QIMSILSGKFWY YLV+
Sbjct: 68  MADPTYGDDGELLDGGFDMSTGGICGYMHDVIYITSFVQIMSILSGKFWYTYLVI 122

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BLAST of MELO3C020438.2 vs. NCBI nr
Match: XP_008452429.1 (PREDICTED: transmembrane protein 208 homolog [Cucumis melo])

HSP 1 Score: 103.6 bits (257), Expect = 2.4e-19
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1   MAKPTSGDDSELLDGGFDMSTGGICGYMHDVIYITSFLQIMSILSGKFWYIYLVV 56
           MAKPT GDD ELLDGGFDMST GICGYMHDVIYITSF+QIMSILSGKFWY YLV+
Sbjct: 68  MAKPTYGDDGELLDGGFDMSTDGICGYMHDVIYITSFVQIMSILSGKFWYTYLVI 122

[Close]

BLAST of MELO3C020438.2 vs. NCBI nr
Match: XP_004144713.1 (PREDICTED: transmembrane protein 208 homolog [Cucumis sativus] >KGN61073.1 hypothetical protein Csa_2G036710 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 5.3e-19
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1   MAKPTSGDDSELLDGGFDMSTGGICGYMHDVIYITSFLQIMSILSGKFWYIYLVV 56
           MA+P  GDD ELLDGGFDMSTGGICGYMHDVIYITSF+QIMSILSGKFWY YLV+
Sbjct: 68  MAQPIYGDDGELLDGGFDMSTGGICGYMHDVIYITSFVQIMSILSGKFWYTYLVI 122

[Close]

BLAST of MELO3C020438.2 vs. NCBI nr
Match: ESR41907.1 (hypothetical protein CICLE_v100129242mg [Citrus clementina])

HSP 1 Score: 102.1 bits (253), Expect = 6.9e-19
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 1   MAKPTSGDDSELLDGGFDMSTGGICGYMHDVIYITSFLQIMSILSGKFWYIYLVVRSIH 60
           MAKPT  DD EL+DGGFDMSTGGICGY+HDVIYITSF+Q+MSILS KFWY YLVVR I+
Sbjct: 68  MAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYTYLVVRFIY 126

[Close]

BLAST of MELO3C020438.2 vs. NCBI nr
Match: XP_022153357.1 (transmembrane protein 208 homolog [Momordica charantia])

HSP 1 Score: 102.1 bits (253), Expect = 6.9e-19
Identity = 47/55 (85.45%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1   MAKPTSGDDSELLDGGFDMSTGGICGYMHDVIYITSFLQIMSILSGKFWYIYLVV 56
           MA PT GDD ELLDGGFDMSTGGICGY+HDVIYITSF+QIMSI+SGKFWY YLV+
Sbjct: 68  MANPTYGDDGELLDGGFDMSTGGICGYLHDVIYITSFVQIMSIVSGKFWYTYLVI 122

[Close]

BLAST of MELO3C020438.2 vs. TAIR10
Match: AT2G23940.1 (Protein of unknown function (DUF788))

HSP 1 Score: 91.7 bits (226), Expect = 1.7e-19
Identity = 40/55 (72.73%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1   MAKPTSGDDSELLDGGFDMSTGGICGYMHDVIYITSFLQIMSILSGKFWYIYLVV 56
           MAKP+  DD EL+DGGFDM+TGGICGY+HDVIYIT F+Q+ SI++GKFWY YLV+
Sbjct: 68  MAKPSVTDDGELIDGGFDMTTGGICGYLHDVIYITCFVQLASIITGKFWYTYLVI 122

[Close]

BLAST of MELO3C020438.2 vs. TAIR10
Match: AT4G30500.1 (Protein of unknown function (DUF788))

HSP 1 Score: 87.0 bits (214), Expect = 4.2e-18
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1   MAKPTSGDDSELLDGGFDMSTGGICGYMHDVIYITSFLQIMSILSGKFWYIYLVV 56
           MAKP+  D  ELLDGGFDMST G+CGY+HDV+YIT F+Q+ SI+SGKFWY YLV+
Sbjct: 68  MAKPSVSDAGELLDGGFDMSTPGMCGYLHDVLYITCFVQVGSIISGKFWYAYLVI 122

[Close]

BLAST of MELO3C020438.2 vs. Swiss-Prot
Match: sp|Q6NYP0|TM208_DANRE (Transmembrane protein 208 OS=Danio rerio OX=7955 GN=tmem208 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.1e-06
Identity = 26/62 (41.94%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 1   MAKPTSGDDSELLDGGFDMS-TGGICGYMHDVIYITSFLQIMSILSGKFWYIYLV--VRS 60
           MAKP   +D  LLDGG D++   G+  ++ DVI +T+ +Q++S LS  FWY++L+   R+
Sbjct: 74  MAKPAFAEDGSLLDGGIDLNMEQGMAEHLKDVILLTAIVQVLSTLSSYFWYLWLLAPARA 133

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BLAST of MELO3C020438.2 vs. Swiss-Prot
Match: sp|Q54UB0|TM208_DICDI (Transmembrane protein 208 homolog OS=Dictyostelium discoideum OX=44689 GN=tmem208 PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 3.3e-04
Identity = 21/55 (38.18%), Postives = 35/55 (63.64%), Query Frame = 0


Query: 1   MAKPTSGDDSELLDGGFDMSTGGICGYMHDVIYITSFLQIMSILSGKFWYIYLVV 56
           M K T  ++ EL+DGG D++ GG+  Y  D+IY+   +Q + ++S K  Y+ LV+
Sbjct: 68  MCKLTYDNNGELIDGGSDLNQGGMTEYYFDIIYVCCIIQGLGLISDKCLYLILVI 122

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BLAST of MELO3C020438.2 vs. TrEMBL
Match: tr|A0A1S3BUY1|A0A1S3BUY1_CUCME (transmembrane protein 208 homolog OS=Cucumis melo OX=3656 GN=LOC103493461 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.6e-19
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1   MAKPTSGDDSELLDGGFDMSTGGICGYMHDVIYITSFLQIMSILSGKFWYIYLVV 56
           MAKPT GDD ELLDGGFDMST GICGYMHDVIYITSF+QIMSILSGKFWY YLV+
Sbjct: 68  MAKPTYGDDGELLDGGFDMSTDGICGYMHDVIYITSFVQIMSILSGKFWYTYLVI 122

[Close]

BLAST of MELO3C020438.2 vs. TrEMBL
Match: tr|A0A0A0LH45|A0A0A0LH45_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G036710 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.5e-19
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1   MAKPTSGDDSELLDGGFDMSTGGICGYMHDVIYITSFLQIMSILSGKFWYIYLVV 56
           MA+P  GDD ELLDGGFDMSTGGICGYMHDVIYITSF+QIMSILSGKFWY YLV+
Sbjct: 68  MAQPIYGDDGELLDGGFDMSTGGICGYMHDVIYITSFVQIMSILSGKFWYTYLVI 122

[Close]

BLAST of MELO3C020438.2 vs. TrEMBL
Match: tr|V4SML5|V4SML5_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v100129242mg PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.6e-19
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 1   MAKPTSGDDSELLDGGFDMSTGGICGYMHDVIYITSFLQIMSILSGKFWYIYLVVRSIH 60
           MAKPT  DD EL+DGGFDMSTGGICGY+HDVIYITSF+Q+MSILS KFWY YLVVR I+
Sbjct: 68  MAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYTYLVVRFIY 126

[Close]

BLAST of MELO3C020438.2 vs. TrEMBL
Match: tr|W9T1Z8|W9T1Z8_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000469 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 7.8e-19
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1   MAKPTSGDDSELLDGGFDMSTGGICGYMHDVIYITSFLQIMSILSGKFWYIYLVVRSIH 60
           MAKP    D EL+DGGFDMSTGG+CGY+HDVIYITSF+Q+ SI+SGKFWY YLVVRS+H
Sbjct: 68  MAKPAYAGDGELIDGGFDMSTGGVCGYLHDVIYITSFVQLASIISGKFWYTYLVVRSLH 126

[Close]

BLAST of MELO3C020438.2 vs. TrEMBL
Match: tr|A0A2C9VMI4|A0A2C9VMI4_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G033000 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 7.8e-19
Identity = 47/57 (82.46%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1   MAKPTSGDDSELLDGGFDMSTGGICGYMHDVIYITSFLQIMSILSGKFWYIYLVVRS 58
           MAKP+ GDD ELLDGGFDMSTGGICGY+HDVIYITSF+Q+ SI+S KFWY YLVVRS
Sbjct: 68  MAKPSYGDDGELLDGGFDMSTGGICGYLHDVIYITSFVQLTSIISEKFWYTYLVVRS 124

The following BLAST results are available for this feature:

BLAST of MELO3C020438.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946520.1	1.8e-19	89.09	transmembrane protein 208 homolog [Cucurbita moschata] >XP_022999772.1 transmemb...	[more]
XP_008452429.1	2.4e-19	89.09	PREDICTED: transmembrane protein 208 homolog [Cucumis melo]	[more]
XP_004144713.1	5.3e-19	87.27	PREDICTED: transmembrane protein 208 homolog [Cucumis sativus] >KGN61073.1 hypot...	[more]
ESR41907.1	6.9e-19	81.36	hypothetical protein CICLE_v100129242mg [Citrus clementina]	[more]
XP_022153357.1	6.9e-19	85.45	transmembrane protein 208 homolog [Momordica charantia]	[more]

BLAST of MELO3C020438.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G23940.1	1.7e-19	72.73	Protein of unknown function (DUF788)	[more]
AT4G30500.1	4.2e-18	70.91	Protein of unknown function (DUF788)	[more]

BLAST of MELO3C020438.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6NYP0\|TM208_DANRE	2.1e-06	41.94	Transmembrane protein 208 OS=Danio rerio OX=7955 GN=tmem208 PE=2 SV=1	[more]
sp\|Q54UB0\|TM208_DICDI	3.3e-04	38.18	Transmembrane protein 208 homolog OS=Dictyostelium discoideum OX=44689 GN=tmem20...	[more]

BLAST of MELO3C020438.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BUY1\|A0A1S3BUY1_CUCME	1.6e-19	89.09	transmembrane protein 208 homolog OS=Cucumis melo OX=3656 GN=LOC103493461 PE=4 S...	[more]
tr\|A0A0A0LH45\|A0A0A0LH45_CUCSA	3.5e-19	87.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G036710 PE=4 SV=1	[more]
tr\|V4SML5\|V4SML5_9ROSI	4.6e-19	81.36	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v100129242mg PE=4...	[more]
tr\|W9T1Z8\|W9T1Z8_9ROSA	7.8e-19	76.27	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000469 PE=4 SV=1	[more]
tr\|A0A2C9VMI4\|A0A2C9VMI4_MANES	7.8e-19	82.46	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G033000 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008506	SND2/TMEM208

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020438.2.1	MELO3C020438.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008506	SRP-independent targeting protein 2/TMEM208	PFAM	PF05620	DUF788	coord: 1..55 e-value: 6.3E-19 score: 68.3
IPR008506	SRP-independent targeting protein 2/TMEM208	PANTHER	PTHR13505	FAMILY NOT NAMED	coord: 1..55

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020438.2	Cucumber (Chinese Long) v3	cucmedB129
MELO3C020438.2	Watermelon (97103) v2	medwmbB378
MELO3C020438.2	Wax gourd	medwgoB453
MELO3C020438.2	Cucumber (Gy14) v2	cgybmedB114
MELO3C020438.2	Cucumber (Gy14) v1	cgymedB346
MELO3C020438.2	Cucumber (Gy14) v1	cgymedB429
MELO3C020438.2	Cucurbita maxima (Rimu)	cmamedB266
MELO3C020438.2	Cucurbita maxima (Rimu)	cmamedB394
MELO3C020438.2	Cucurbita maxima (Rimu)	cmamedB946
MELO3C020438.2	Cucurbita moschata (Rifu)	cmomedB250
MELO3C020438.2	Cucurbita moschata (Rifu)	cmomedB381
MELO3C020438.2	Cucurbita moschata (Rifu)	cmomedB854
MELO3C020438.2	Cucurbita moschata (Rifu)	cmomedB935
MELO3C020438.2	Cucurbita pepo (Zucchini)	cpemedB166
MELO3C020438.2	Cucurbita pepo (Zucchini)	cpemedB362
MELO3C020438.2	Wild cucumber (PI 183967)	cpimedB127
MELO3C020438.2	Cucumber (Chinese Long) v2	cumedB127
MELO3C020438.2	Melon (DHL92) v3.6.1	medmedB144
MELO3C020438.2	Bottle gourd (USVL1VR-Ls)	lsimedB027
MELO3C020438.2	Watermelon (Charleston Gray)	medwcgB376
MELO3C020438.2	Watermelon (Charleston Gray)	medwcgB378
MELO3C020438.2	Watermelon (97103) v1	medwmB404
MELO3C020438.2	Watermelon (97103) v1	medwmB418
MELO3C020438.2	Silver-seed gourd	carmedB0240
MELO3C020438.2	Silver-seed gourd	carmedB0945
MELO3C020438.2	Silver-seed gourd	carmedB1060