MELO3C020438 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020438
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Transmembrane protein
Location	chr5 : 8590494 .. 8591861 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAGCCAACCTCTGGTGATGATAGTGAACTTCTAGATGGTGGATTTGATATGAGTACTGGTGGAATTTGTGGGTATGTCTACCATTACATGTCAGTTTTATGCATGTTTTTATCTCCATTACATAAAGTATAATTGTTAAGTACAAACCTGGCATATTTAATTGTTCTGTGACCCAAGTTTAAGGTGAACTGTTGCTTTAAAACTAAGAATTGGTATGATTTTGTTGACCAAATATCAAATTTCATGAGGAAGCTGAAGCTATTTTTCTTGATCGTCGTTCTAAAATTCAATCTAAAATGCTTGAAATGGAAGAAACTAGTGATTTGCTTGGCCTAACTCTCATTTCTTCCCACTCTTCAAAAGCTCGGCACCTTCAAAGTTAGCCCTTTTGTTGAGTCTTTGCTCTACGATCTCTGAGTGCCTTTTTCTTCTTCATCTTTTAAATACTGATCATACCAACCTACAATTGTGGCATATTATTCTATTTCAGTTTCCTCTGTAGTTATCATTTCCTTTTCGCCTGAATTTCGTGACTAAATTGATTTTCATTTATAGAATTGTAAATTGATATTTAGTATGATTGTCTATTGGTTTAATAACTCTCCATAAGGGCAATATACACAAAAATCACGGTTGTTTGTTCATTTGCCTTACTGGATCTTTCAATTTTCTTTCTTGAACATATTTCAAATTGGATAGTGATATATAAGCAAGCTTGCAGCTTCAAAAGGAATAGGCTTATTGGGTTTTTAAGTTTTCTGGGAAATGGTTCTGCTCCACTTGTTGCTTTGATCAATTGATGTGTTTATCATCACTAATGTGACAGAACAATTCTATGGTAATGTTTTTGGCCTACATAATATTAAGTGGTTTTGTGTGGGGTTTTTCCATTCAGTGGCAAAGGTGGTGTTTATAATATGGATGAAGTAACTGAAAGGAACAGATGGCTTTTAAGTAACTCTTTTTCTTCTTTTAATCGTTTTATGAATCTTGTTCTATCACCTGCTTTTTTCTGTGTAAAACTAAGCATCCCTTCTCTCATTTCAACCTTTCTTTTTTAGTCAGTAATTGGTGATCTCTTATGTAACAAGCTTTTTCTGTTCGTGGTTCTTCCTTGTTCTTTTATCGAAAAAATTATGGATTGACTTTAAAGAAGAGGTTGGAATCCAATATGGCTAGCCTTCCATCTGTCAATGATTTCTTAACATTTCAATAATTAATCGAAACTTCTTGATGGTTTGTCTTGTTTTTTGCAGCTACATGCATGATGTGATCTACATTACAAGCTTTCTGCAAATAATGTCAATCCTCTCCGGGAAGTTTTGGTACATCTACCTTGTGGTAAGGTCTATTCACTTTTGA

mRNA sequence

ATGGCAAAGCCAACCTCTGGTGATGATAGTGAACTTCTAGATGGTGGATTTGATATGAGTACTGGTGGAATTTGTGGCTACATGCATGATGTGATCTACATTACAAGCTTTCTGCAAATAATGTCAATCCTCTCCGGGAAGTTTTGGTACATCTACCTTGTGGTAAGGTCTATTCACTTTTGA

Coding sequence (CDS)

ATGGCAAAGCCAACCTCTGGTGATGATAGTGAACTTCTAGATGGTGGATTTGATATGAGTACTGGTGGAATTTGTGGCTACATGCATGATGTGATCTACATTACAAGCTTTCTGCAAATAATGTCAATCCTCTCCGGGAAGTTTTGGTACATCTACCTTGTGGTAAGGTCTATTCACTTTTGA

Protein sequence

MAKPTSGDDSELLDGGFDMSTGGICGYMHDVIYITSFLQIMSILSGKFWYIYLVVRSIHF*

Homology

[Close]

BLAST of MELO3C020438 vs. Swiss-Prot
Match: TM208_DANRE (Transmembrane protein 208 OS=Danio rerio GN=tmem208 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.4e-07
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 1


Query: 1   MAKPTSGDDSELLDGGFDMSTG-GICGYMHDVIYITSFLQIMSILSGKFWYIYLV--VRS 60
           MAKP   +D  LLDGG D++   G+  ++ DVI +T+ +Q++S LS  FWY++L+   R+
Sbjct: 74  MAKPAFAEDGSLLDGGIDLNMEQGMAEHLKDVILLTAIVQVLSTLSSYFWYLWLLAPARA 133

[Close]

BLAST of MELO3C020438 vs. TrEMBL
Match: A0A0A0LH45_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G036710 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.7e-20
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 1


Query: 1   MAKPTSGDDSELLDGGFDMSTGGICGYMHDVIYITSFLQIMSILSGKFWYIYLVV 56
           MA+P  GDD ELLDGGFDMSTGGICGYMHDVIYITSF+QIMSILSGKFWY YLV+
Sbjct: 68  MAQPIYGDDGELLDGGFDMSTGGICGYMHDVIYITSFVQIMSILSGKFWYTYLVI 122

[Close]

BLAST of MELO3C020438 vs. TrEMBL
Match: V4SML5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v100129242mg PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 3.0e-20
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 1


Query: 1   MAKPTSGDDSELLDGGFDMSTGGICGYMHDVIYITSFLQIMSILSGKFWYIYLVVRSIH 60
           MAKPT  DD EL+DGGFDMSTGGICGY+HDVIYITSF+Q+MSILS KFWY YLVVR I+
Sbjct: 68  MAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYTYLVVRFIY 126

[Close]

BLAST of MELO3C020438 vs. TrEMBL
Match: W9T1Z8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000469 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 5.1e-20
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 1


Query: 1   MAKPTSGDDSELLDGGFDMSTGGICGYMHDVIYITSFLQIMSILSGKFWYIYLVVRSIH 60
           MAKP    D EL+DGGFDMSTGG+CGY+HDVIYITSF+Q+ SI+SGKFWY YLVVRS+H
Sbjct: 68  MAKPAYAGDGELIDGGFDMSTGGVCGYLHDVIYITSFVQLASIISGKFWYTYLVVRSLH 126

[Close]

BLAST of MELO3C020438 vs. TrEMBL
Match: A0A067EQC8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0306652mg PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 3.3e-19
Identity = 46/55 (83.64%), Postives = 50/55 (90.91%), Query Frame = 1


Query: 1   MAKPTSGDDSELLDGGFDMSTGGICGYMHDVIYITSFLQIMSILSGKFWYIYLVV 56
           MAKPT  DD EL+DGGFDMSTGGICGY+HDVIYITSF+Q+MSILS KFWY YLVV
Sbjct: 68  MAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYTYLVV 122

[Close]

BLAST of MELO3C020438 vs. TrEMBL
Match: A0A067EDE0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0306652mg PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 4.3e-19
Identity = 45/55 (81.82%), Postives = 50/55 (90.91%), Query Frame = 1


Query: 1   MAKPTSGDDSELLDGGFDMSTGGICGYMHDVIYITSFLQIMSILSGKFWYIYLVV 56
           MAKPT  DD EL+DGGFDMSTGGICGY+HDVIYITSF+Q+MSILS KFWY YLV+
Sbjct: 68  MAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYTYLVI 122

[Close]

BLAST of MELO3C020438 vs. TAIR10
Match: AT2G23940.1 (AT2G23940.1 Protein of unknown function (DUF788))

HSP 1 Score: 95.1 bits (235), Expect = 1.6e-20
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 1


Query: 1   MAKPTSGDDSELLDGGFDMSTGGICGYMHDVIYITSFLQIMSILSGKFWYIYLVV 56
           MAKP+  DD EL+DGGFDM+TGGICGY+HDVIYIT F+Q+ SI++GKFWY YLV+
Sbjct: 68  MAKPSVTDDGELIDGGFDMTTGGICGYLHDVIYITCFVQLASIITGKFWYTYLVI 122

[Close]

BLAST of MELO3C020438 vs. TAIR10
Match: AT4G30500.1 (AT4G30500.1 Protein of unknown function (DUF788))

HSP 1 Score: 90.5 bits (223), Expect = 3.8e-19
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 1


Query: 1   MAKPTSGDDSELLDGGFDMSTGGICGYMHDVIYITSFLQIMSILSGKFWYIYLVV 56
           MAKP+  D  ELLDGGFDMST G+CGY+HDV+YIT F+Q+ SI+SGKFWY YLV+
Sbjct: 68  MAKPSVSDAGELLDGGFDMSTPGMCGYLHDVLYITCFVQVGSIISGKFWYAYLVI 122

[Close]

BLAST of MELO3C020438 vs. NCBI nr
Match: gi|659069921|ref|XP_008452429.1| (PREDICTED: transmembrane protein 208 homolog [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-20
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 1


Query: 1   MAKPTSGDDSELLDGGFDMSTGGICGYMHDVIYITSFLQIMSILSGKFWYIYLVV 56
           MAKPT GDD ELLDGGFDMST GICGYMHDVIYITSF+QIMSILSGKFWY YLV+
Sbjct: 68  MAKPTYGDDGELLDGGFDMSTDGICGYMHDVIYITSFVQIMSILSGKFWYTYLVI 122

[Close]

BLAST of MELO3C020438 vs. NCBI nr
Match: gi|449453938|ref|XP_004144713.1| (PREDICTED: transmembrane protein 208 homolog [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 2.5e-20
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 1


Query: 1   MAKPTSGDDSELLDGGFDMSTGGICGYMHDVIYITSFLQIMSILSGKFWYIYLVV 56
           MA+P  GDD ELLDGGFDMSTGGICGYMHDVIYITSF+QIMSILSGKFWY YLV+
Sbjct: 68  MAQPIYGDDGELLDGGFDMSTGGICGYMHDVIYITSFVQIMSILSGKFWYTYLVI 122

[Close]

BLAST of MELO3C020438 vs. NCBI nr
Match: gi|567872155|ref|XP_006428667.1| (hypothetical protein CICLE_v100129242mg [Citrus clementina])

HSP 1 Score: 105.1 bits (261), Expect = 4.3e-20
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 1


Query: 1   MAKPTSGDDSELLDGGFDMSTGGICGYMHDVIYITSFLQIMSILSGKFWYIYLVVRSIH 60
           MAKPT  DD EL+DGGFDMSTGGICGY+HDVIYITSF+Q+MSILS KFWY YLVVR I+
Sbjct: 68  MAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYTYLVVRFIY 126

[Close]

BLAST of MELO3C020438 vs. NCBI nr
Match: gi|703101228|ref|XP_010097131.1| (hypothetical protein L484_000469 [Morus notabilis])

HSP 1 Score: 104.4 bits (259), Expect = 7.3e-20
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 1


Query: 1   MAKPTSGDDSELLDGGFDMSTGGICGYMHDVIYITSFLQIMSILSGKFWYIYLVVRSIH 60
           MAKP    D EL+DGGFDMSTGG+CGY+HDVIYITSF+Q+ SI+SGKFWY YLVVRS+H
Sbjct: 68  MAKPAYAGDGELIDGGFDMSTGGVCGYLHDVIYITSFVQLASIISGKFWYTYLVVRSLH 126

[Close]

BLAST of MELO3C020438 vs. NCBI nr
Match: gi|645233954|ref|XP_008223585.1| (PREDICTED: transmembrane protein 208 homolog [Prunus mume])

HSP 1 Score: 102.1 bits (253), Expect = 3.6e-19
Identity = 43/55 (78.18%), Postives = 51/55 (92.73%), Query Frame = 1


Query: 1   MAKPTSGDDSELLDGGFDMSTGGICGYMHDVIYITSFLQIMSILSGKFWYIYLVV 56
           MA P+ GDD ELLDGGFDM+TGG+CGYMHDVIYITSF+Q+MSI+SGKFWY YL++
Sbjct: 68  MATPSYGDDGELLDGGFDMTTGGVCGYMHDVIYITSFVQVMSIISGKFWYTYLLI 122

The following BLAST results are available for this feature:

BLAST of MELO3C020438 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TM208_DANRE	2.4e-07	41.94	Transmembrane protein 208 OS=Danio rerio GN=tmem208 PE=2 SV=1	[more]

BLAST of MELO3C020438 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH45_CUCSA	1.7e-20	87.27	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G036710 PE=4 SV=1	[more]
V4SML5_9ROSI	3.0e-20	81.36	Uncharacterized protein OS=Citrus clementina GN=CICLE_v100129242mg PE=4 SV=1	[more]
W9T1Z8_9ROSA	5.1e-20	76.27	Uncharacterized protein OS=Morus notabilis GN=L484_000469 PE=4 SV=1	[more]
A0A067EQC8_CITSI	3.3e-19	83.64	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0306652mg PE=4 SV=1	[more]
A0A067EDE0_CITSI	4.3e-19	81.82	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0306652mg PE=4 SV=1	[more]

BLAST of MELO3C020438 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G23940.1	1.6e-20	72.73	Protein of unknown function (DUF788)	[more]
AT4G30500.1	3.8e-19	70.91	Protein of unknown function (DUF788)	[more]

BLAST of MELO3C020438 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069921\|ref\|XP_008452429.1\|	1.1e-20	89.09	PREDICTED: transmembrane protein 208 homolog [Cucumis melo]	[more]
gi\|449453938\|ref\|XP_004144713.1\|	2.5e-20	87.27	PREDICTED: transmembrane protein 208 homolog [Cucumis sativus]	[more]
gi\|567872155\|ref\|XP_006428667.1\|	4.3e-20	81.36	hypothetical protein CICLE_v100129242mg [Citrus clementina]	[more]
gi\|703101228\|ref\|XP_010097131.1\|	7.3e-20	76.27	hypothetical protein L484_000469 [Morus notabilis]	[more]
gi\|645233954\|ref\|XP_008223585.1\|	3.6e-19	78.18	PREDICTED: transmembrane protein 208 homolog [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008506	SND2/TMEM208

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020438T1	MELO3C020438T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008506	Protein of unknown function DUF788, TMEM208	PANTHER	PTHR13505	FAMILY NOT NAMED	coord: 1..55 score: 2.4
IPR008506	Protein of unknown function DUF788, TMEM208	PFAM	PF05620	DUF788	coord: 1..55 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020438	Melon (DHL92) v3.5.1	memeB147
MELO3C020438	Cucumber (Gy14) v1	cgymeB351
MELO3C020438	Cucumber (Gy14) v1	cgymeB434
MELO3C020438	Cucurbita maxima (Rimu)	cmameB234
MELO3C020438	Cucurbita maxima (Rimu)	cmameB338
MELO3C020438	Cucurbita maxima (Rimu)	cmameB845
MELO3C020438	Cucurbita moschata (Rifu)	cmomeB221
MELO3C020438	Cucurbita moschata (Rifu)	cmomeB331
MELO3C020438	Cucurbita moschata (Rifu)	cmomeB752
MELO3C020438	Cucurbita moschata (Rifu)	cmomeB828
MELO3C020438	Wild cucumber (PI 183967)	cpimeB134
MELO3C020438	Wild cucumber (PI 183967)	cpimeB226
MELO3C020438	Cucumber (Chinese Long) v2	cumeB134
MELO3C020438	Watermelon (Charleston Gray)	mewcgB385
MELO3C020438	Watermelon (Charleston Gray)	mewcgB388
MELO3C020438	Watermelon (97103) v1	mewmB413
MELO3C020438	Watermelon (97103) v1	mewmB430
MELO3C020438	Cucurbita pepo (Zucchini)	cpemeB137
MELO3C020438	Cucurbita pepo (Zucchini)	cpemeB310
MELO3C020438	Cucurbita pepo (Zucchini)	cpemeB578
MELO3C020438	Cucurbita pepo (Zucchini)	cpemeB804
MELO3C020438	Bottle gourd (USVL1VR-Ls)	lsimeB025
MELO3C020438	Bottle gourd (USVL1VR-Ls)	lsimeB360
MELO3C020438	Cucumber (Gy14) v2	cgybmeB115
MELO3C020438	Cucumber (Gy14) v2	cgybmeB195
MELO3C020438	Silver-seed gourd	carmeB0233
MELO3C020438	Silver-seed gourd	carmeB0939
MELO3C020438	Silver-seed gourd	carmeB1046
MELO3C020438	Cucumber (Chinese Long) v3	cucmeB136
MELO3C020438	Cucumber (Chinese Long) v3	cucmeB232
MELO3C020438	Watermelon (97103) v2	mewmbB384
MELO3C020438	Watermelon (97103) v2	mewmbB388
MELO3C020438	Wax gourd	mewgoB450