MELO3C020391 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020391
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr5 : 9998629 .. 9999030 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAACATACAAGGAACAGACAGTGCGGCTCCGAGGAAAGGACAACAACACCAATGGACAACTCCTACTTACTCATGTCGAGTGGAAAGCAAGACAAAAACTGAATAATGGTGACAACTTTTCGGTGAACAATGGGCACAGATCCTATGGTAGCGATCACGAAAGATGGCAAGGACAAAGACGAGGTCGTAGTCATGGTCGTGGCGTAGAGCATCAAAACAGTATGGGAGGCACTAGAAACACTAGAAAAGGCACTCGTGATAAAAGTCACATAAAGTGCTTCACTTGCAACAAGATGGGACATTACACGTCGAAGTGTCATGGAAAAATTCATGACGACGAAGCTCATCTAACTTGCACCGTCGAAGAAGAACGAACTTTGATGATGGTCGTCTTCTAG

mRNA sequence

ATGAAAACATACAAGGAACAGACAGTGCGGCTCCGAGGAAAGGACAACAACACCAATGGACAACTCCTACTTACTCATGTCGAGTGGAAAGCAAGACAAAAACTGAATAATGGTGACAACTTTTCGGTGAACAATGGGCACAGATCCTATGGTAGCGATCACGAAAGATGGCAAGGACAAAGACGAGGTCGTAGTCATGGTCGTGGCGTAGAGCATCAAAACAGTATGGGAGGCACTAGAAACACTAGAAAAGGCACTCGTGATAAAAGTCACATAAAGTGCTTCACTTGCAACAAGATGGGACATTACACGTCGAAGTGTCATGGAAAAATTCATGACGACGAAGCTCATCTAACTTGCACCGTCGAAGAAGAACGAACTTTGATGATGGTCGTCTTCTAG

Coding sequence (CDS)

ATGAAAACATACAAGGAACAGACAGTGCGGCTCCGAGGAAAGGACAACAACACCAATGGACAACTCCTACTTACTCATGTCGAGTGGAAAGCAAGACAAAAACTGAATAATGGTGACAACTTTTCGGTGAACAATGGGCACAGATCCTATGGTAGCGATCACGAAAGATGGCAAGGACAAAGACGAGGTCGTAGTCATGGTCGTGGCGTAGAGCATCAAAACAGTATGGGAGGCACTAGAAACACTAGAAAAGGCACTCGTGATAAAAGTCACATAAAGTGCTTCACTTGCAACAAGATGGGACATTACACGTCGAAGTGTCATGGAAAAATTCATGACGACGAAGCTCATCTAACTTGCACCGTCGAAGAAGAACGAACTTTGATGATGGTCGTCTTCTAG

Protein sequence

MKTYKEQTVRLRGKDNNTNGQLLLTHVEWKARQKLNNGDNFSVNNGHRSYGSDHERWQGQRRGRSHGRGVEHQNSMGGTRNTRKGTRDKSHIKCFTCNKMGHYTSKCHGKIHDDEAHLTCTVEEERTLMMVVF*

Homology

[Close]

BLAST of MELO3C020391 vs. TrEMBL
Match: C6JSM1_SORBI (Putative uncharacterized protein Sb1475s002010 OS=Sorghum bicolor GN=Sb1475s002010 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-16
Identity = 55/134 (41.04%), Postives = 76/134 (56.72%), Query Frame = 1


Query: 1   MKTYKEQTVRLRGKDNNTNGQLLLTHVEWKARQKLNNGDNFSVNNGHRSYGSDHERWQGQ 60
           +K Y+E+T R  G+  +  GQ+LLT  EW+ARQ+ + GD    + G RS         G 
Sbjct: 197 LKAYEERTRRGVGEGRSEAGQVLLTQAEWEARQRKSTGDG---SGGSRSQ-------DGG 256

Query: 61  RRGRSHGRGVEHQNSMGGTRNTRK-GTRDKSHIKCFTCNKMGHYTSKCHG--KIHDDEAH 120
            RGR  GRG   +   GG R+    G RDKSHIKCF C++MGHY ++C G  K  ++EAH
Sbjct: 257 GRGRGRGRGGGGRGGRGGQRDAASTGKRDKSHIKCFKCHQMGHYANRCPGVEKKKEEEAH 316

Query: 121 LTCTVEEERTLMMV 132
                  E T+++V
Sbjct: 317 HVRAAPLEPTVLLV 320

[Close]

BLAST of MELO3C020391 vs. TrEMBL
Match: Q84SW8_ORYSJ (Gag-pol polyprotein OS=Oryza sativa subsp. japonica GN=LOC_Os03g47410 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.4e-14
Identity = 55/138 (39.86%), Postives = 71/138 (51.45%), Query Frame = 1


Query: 1   MKTYKEQTVRLRGKDNNT-----NGQLLLTHVEWKARQKLNNGDNFSVNNGHRSYGSDHE 60
           +K Y+E   R+R K   T     +GQ+LLT  EW+AR K   G+  S      S    + 
Sbjct: 142 LKAYEE---RMRKKKATTGGVTADGQVLLTQAEWEARFKKGGGETSSPQKNKPSGEGANR 201

Query: 61  RWQGQRRGRSHGRGVEHQNSMGGTRNTRKGTRDKSHIKCFTCNKMGHYTSKC-HGKIHDD 120
              G+ RGR  GRG     S GG      G RDKSHIKCF C + GHY+++C H K    
Sbjct: 202 GQAGRGRGRGRGRG--GTQSSGGGSGGGSGGRDKSHIKCFNCEEFGHYSTQCPHPKKKKA 261

Query: 121 EAHLTCTVEEERTLMMVV 133
           EAHL  T +   TL++ V
Sbjct: 262 EAHLAQTEDAGPTLLLAV 274

[Close]

BLAST of MELO3C020391 vs. TrEMBL
Match: Q8H8L9_ORYSJ (Putative polyprotein OS=Oryza sativa subsp. japonica GN=LOC_Os03g56530 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.0e-12
Identity = 48/136 (35.29%), Postives = 71/136 (52.21%), Query Frame = 1


Query: 1   MKTYKEQTVRLRGKDNNT--NGQLLLTHVEWKARQKLNNGDNFSVNNGHRSYGSDHERWQ 60
           +K Y+E+  + +        +GQ+LLT  EW+AR K + G++ S   G  S         
Sbjct: 169 LKAYEERVRKKKAAAGGVTADGQVLLTQAEWEARFKKDGGESSSPQKGKASGEGAKGGQS 228

Query: 61  GQRRGRSHGRGVEHQNSMGGTRN-TRKGTRDKSHIKCFTCNKMGHYTSKC-HGKIHDDEA 120
           G+ RGR  G G     + G + + +  G RDKSHIKCF C + GHY+++C H K    EA
Sbjct: 229 GRERGRGRGAGGRGGAARGNSASGSGGGGRDKSHIKCFNCEEYGHYSNQCPHPKKKKGEA 288

Query: 121 HLTCTVEEERTLMMVV 133
           HL  T +    L++ V
Sbjct: 289 HLAQTEDAGAVLLLAV 304

[Close]

BLAST of MELO3C020391 vs. TrEMBL
Match: Q7XMW2_ORYSJ (OSJNBb0040D15.12 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0040D15.12 PE=4 SV=2)

HSP 1 Score: 80.1 bits (196), Expect = 2.3e-12
Identity = 46/115 (40.00%), Postives = 60/115 (52.17%), Query Frame = 1


Query: 19  NGQLLLTHVEWKARQKLNNGDNFSVNNGHRSYGSDHERWQGQRRGRSHGRGVEHQNSMGG 78
           +GQ+LLT  EW+AR K   G+  S      S    +    G+ RGR  GRG     S GG
Sbjct: 22  DGQVLLTQAEWEARFKKGGGETSSPQRNKPSGEGANRGQAGRGRGRGRGRG--GTQSSGG 81

Query: 79  TRNTRKGTRDKSHIKCFTCNKMGHYTSKC-HGKIHDDEAHLTCTVEEERTLMMVV 133
           +       RDKSHIKCF C + GHY+++C H K    EAHL  T +    L++ V
Sbjct: 82  SSGGGGSGRDKSHIKCFNCEEFGHYSTQCPHPKKKKAEAHLAQTEDAGPALLLAV 134

[Close]

BLAST of MELO3C020391 vs. TrEMBL
Match: Q10RM4_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os03g05850 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.6e-12
Identity = 53/141 (37.59%), Postives = 72/141 (51.06%), Query Frame = 1


Query: 1   MKTYKEQTVRLRGKDNN--TNGQLLLTHVEWKARQKLNNGDNFSVNNGHRSYGSDHERWQ 60
           +K Y+E+  + +       T+GQ+LLT  EW+A  K N G++ S    ++  G    R Q
Sbjct: 192 LKAYEERMRKKKAAAGGVTTDGQVLLTQAEWEAHFKKNGGES-SPPQKNKPSGEGAGRGQ 251

Query: 61  GQRRGRSHGRGVEHQNSMGGTRNTRKGT------RDKSHIKCFTCNKMGHYTSKC-HGKI 120
           G R GR  GRG       GGT     G       RDKSHIKCF C + GHY+++C H K 
Sbjct: 252 GGR-GRGRGRGA---GGRGGTPRGDSGAGSGGGGRDKSHIKCFNCEEYGHYSNQCPHPKK 311

Query: 121 HDDEAHLTCTVEEERTLMMVV 133
              EAHL  T +    L++ V
Sbjct: 312 KKGEAHLAQTEDAGPALLLAV 327

[Close]

BLAST of MELO3C020391 vs. NCBI nr
Match: gi|778722274|ref|XP_011658449.1| (PREDICTED: uncharacterized protein LOC105436008 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 3.2e-20
Identity = 52/90 (57.78%), Postives = 64/90 (71.11%), Query Frame = 1


Query: 1   MKTYKEQTVRLRGKDNNTNGQLLLTHVEWKARQKLNNGDNFSVNNGHRSYGSDHERWQGQ 60
           M  Y+E+T +L G +NNT+GQLLLTH EWKARQK N+G N S+N GH S G++  RW+G 
Sbjct: 187 MMVYEERTTQLLGNNNNTDGQLLLTHAEWKARQKENSGGNSSMNKGHGSGGTNRGRWRG- 246

Query: 61  RRGRSHGRGVEHQNSMGGTRNTRKGTRDKS 91
                +GRG E QNS+GGT NT  GT DKS
Sbjct: 247 -----YGRGTERQNSVGGTSNTGNGTGDKS 270

[Close]

BLAST of MELO3C020391 vs. NCBI nr
Match: gi|253759675|ref|XP_002488942.1| (hypothetical protein SORBIDRAFT_1475s002010 [Sorghum bicolor])

HSP 1 Score: 94.4 bits (233), Expect = 1.7e-16
Identity = 55/134 (41.04%), Postives = 76/134 (56.72%), Query Frame = 1


Query: 1   MKTYKEQTVRLRGKDNNTNGQLLLTHVEWKARQKLNNGDNFSVNNGHRSYGSDHERWQGQ 60
           +K Y+E+T R  G+  +  GQ+LLT  EW+ARQ+ + GD    + G RS         G 
Sbjct: 197 LKAYEERTRRGVGEGRSEAGQVLLTQAEWEARQRKSTGDG---SGGSRSQ-------DGG 256

Query: 61  RRGRSHGRGVEHQNSMGGTRNTRK-GTRDKSHIKCFTCNKMGHYTSKCHG--KIHDDEAH 120
            RGR  GRG   +   GG R+    G RDKSHIKCF C++MGHY ++C G  K  ++EAH
Sbjct: 257 GRGRGRGRGGGGRGGRGGQRDAASTGKRDKSHIKCFKCHQMGHYANRCPGVEKKKEEEAH 316

Query: 121 LTCTVEEERTLMMV 132
                  E T+++V
Sbjct: 317 HVRAAPLEPTVLLV 320

[Close]

BLAST of MELO3C020391 vs. NCBI nr
Match: gi|29150404|gb|AAO72413.1| (gag-pol polyprotein [Oryza sativa Japonica Group])

HSP 1 Score: 86.7 bits (213), Expect = 3.5e-14
Identity = 55/138 (39.86%), Postives = 71/138 (51.45%), Query Frame = 1


Query: 1   MKTYKEQTVRLRGKDNNT-----NGQLLLTHVEWKARQKLNNGDNFSVNNGHRSYGSDHE 60
           +K Y+E   R+R K   T     +GQ+LLT  EW+AR K   G+  S      S    + 
Sbjct: 142 LKAYEE---RMRKKKATTGGVTADGQVLLTQAEWEARFKKGGGETSSPQKNKPSGEGANR 201

Query: 61  RWQGQRRGRSHGRGVEHQNSMGGTRNTRKGTRDKSHIKCFTCNKMGHYTSKC-HGKIHDD 120
              G+ RGR  GRG     S GG      G RDKSHIKCF C + GHY+++C H K    
Sbjct: 202 GQAGRGRGRGRGRG--GTQSSGGGSGGGSGGRDKSHIKCFNCEEFGHYSTQCPHPKKKKA 261

Query: 121 EAHLTCTVEEERTLMMVV 133
           EAHL  T +   TL++ V
Sbjct: 262 EAHLAQTEDAGPTLLLAV 274

[Close]

BLAST of MELO3C020391 vs. NCBI nr
Match: gi|24899448|gb|AAN65018.1| (putative polyprotein [Oryza sativa Japonica Group])

HSP 1 Score: 81.3 bits (199), Expect = 1.5e-12
Identity = 48/136 (35.29%), Postives = 71/136 (52.21%), Query Frame = 1


Query: 1   MKTYKEQTVRLRGKDNNT--NGQLLLTHVEWKARQKLNNGDNFSVNNGHRSYGSDHERWQ 60
           +K Y+E+  + +        +GQ+LLT  EW+AR K + G++ S   G  S         
Sbjct: 169 LKAYEERVRKKKAAAGGVTADGQVLLTQAEWEARFKKDGGESSSPQKGKASGEGAKGGQS 228

Query: 61  GQRRGRSHGRGVEHQNSMGGTRN-TRKGTRDKSHIKCFTCNKMGHYTSKC-HGKIHDDEA 120
           G+ RGR  G G     + G + + +  G RDKSHIKCF C + GHY+++C H K    EA
Sbjct: 229 GRERGRGRGAGGRGGAARGNSASGSGGGGRDKSHIKCFNCEEYGHYSNQCPHPKKKKGEA 288

Query: 121 HLTCTVEEERTLMMVV 133
           HL  T +    L++ V
Sbjct: 289 HLAQTEDAGAVLLLAV 304

[Close]

BLAST of MELO3C020391 vs. NCBI nr
Match: gi|38345658|emb|CAE04422.2| (OSJNBb0040D15.12 [Oryza sativa Japonica Group])

HSP 1 Score: 80.1 bits (196), Expect = 3.2e-12
Identity = 46/115 (40.00%), Postives = 60/115 (52.17%), Query Frame = 1


Query: 19  NGQLLLTHVEWKARQKLNNGDNFSVNNGHRSYGSDHERWQGQRRGRSHGRGVEHQNSMGG 78
           +GQ+LLT  EW+AR K   G+  S      S    +    G+ RGR  GRG     S GG
Sbjct: 22  DGQVLLTQAEWEARFKKGGGETSSPQRNKPSGEGANRGQAGRGRGRGRGRG--GTQSSGG 81

Query: 79  TRNTRKGTRDKSHIKCFTCNKMGHYTSKC-HGKIHDDEAHLTCTVEEERTLMMVV 133
           +       RDKSHIKCF C + GHY+++C H K    EAHL  T +    L++ V
Sbjct: 82  SSGGGGSGRDKSHIKCFNCEEFGHYSTQCPHPKKKKAEAHLAQTEDAGPALLLAV 134

The following BLAST results are available for this feature:

BLAST of MELO3C020391 vs. TrEMBL


Match Name	E-value	Identity	Description
C6JSM1_SORBI	1.2e-16	41.04	Putative uncharacterized protein Sb1475s002010 OS=Sorghum bicolor GN=Sb1475s0020...	[more]
Q84SW8_ORYSJ	2.4e-14	39.86	Gag-pol polyprotein OS=Oryza sativa subsp. japonica GN=LOC_Os03g47410 PE=4 SV=1	[more]
Q8H8L9_ORYSJ	1.0e-12	35.29	Putative polyprotein OS=Oryza sativa subsp. japonica GN=LOC_Os03g56530 PE=4 SV=1	[more]
Q7XMW2_ORYSJ	2.3e-12	40.00	OSJNBb0040D15.12 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0040D15.12 PE=...	[more]
Q10RM4_ORYSJ	6.6e-12	37.59	Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ...	[more]

BLAST of MELO3C020391 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778722274\|ref\|XP_011658449.1\|	3.2e-20	57.78	PREDICTED: uncharacterized protein LOC105436008 [Cucumis sativus]	[more]
gi\|253759675\|ref\|XP_002488942.1\|	1.7e-16	41.04	hypothetical protein SORBIDRAFT_1475s002010 [Sorghum bicolor]	[more]
gi\|29150404\|gb\|AAO72413.1\|	3.5e-14	39.86	gag-pol polyprotein [Oryza sativa Japonica Group]	[more]
gi\|24899448\|gb\|AAN65018.1\|	1.5e-12	35.29	putative polyprotein [Oryza sativa Japonica Group]	[more]
gi\|38345658\|emb\|CAE04422.2\|	3.2e-12	40.00	OSJNBb0040D15.12 [Oryza sativa Japonica Group]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001878	Znf_CCHC

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020391T1	MELO3C020391T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	GENE3D	G3DSA:4.10.60.10		coord: 86..108 score: 6.
IPR001878	Zinc finger, CCHC-type	PROFILE	PS50158	ZF_CCHC	coord: 93..107 score: 8
IPR001878	Zinc finger, CCHC-type	unknown	SSF57756	Retrovirus zinc finger-like domains	coord: 77..115 score: 2.0
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 60..131 score: 6.1E-12coord: 1..35 score: 6.1
None	No IPR available	PANTHER	PTHR11439:SF172	SUBFAMILY NOT NAMED	coord: 60..131 score: 6.1E-12coord: 1..35 score: 6.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020391	Bottle gourd (USVL1VR-Ls)	lsimeB023
MELO3C020391	Cucumber (Gy14) v2	cgybmeB114
MELO3C020391	Cucumber (Chinese Long) v3	cucmeB135
MELO3C020391	Watermelon (97103) v2	mewmbB397
MELO3C020391	Wax gourd	mewgoB445
MELO3C020391	Cucumber (Gy14) v1	cgymeB445
MELO3C020391	Wild cucumber (PI 183967)	cpimeB133
MELO3C020391	Cucumber (Chinese Long) v2	cumeB135
MELO3C020391	Watermelon (Charleston Gray)	mewcgB395
MELO3C020391	Watermelon (97103) v1	mewmB438