MELO3C020349 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020349
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Formin-like protein
Location	chr5 : 10844503 .. 10845249 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGCTTTCTGTTAAGAGTGAAAGAGAAGATAAGACAGCAAGACCAAAATCTAGCCTTGATCTATTCGATCTTGGTATGCTAGGTATGGATGTTGAAGAACAGACTCATACTTCTGAAAGTGAGAAGGAGTTATCTGTTCATAAAGAGGGAGAAAGGAGTGAAGAGATGTTGGATTCAAAATTTGATAATGTAAGTGTTTCTTCAACCAAGGAAGTGATGTATGCTCGTGAGGAAGATGATAGTAAATCAATACAATGTGTATCTAATGGAACTCATTCCTCATCTGGGGATAAGATTACTCTTGTTCAATGTTGTTTATCTAATGACGAGGAATCATTCCATTCTTGTGGTGATTCCAATTTTTTAAATCGTCGCCTTTCAAATGCTTCAGAAACTTCTTCTGCTAATGTGATAACAAATTCTACTTGTTCAGTACCAACTGCGAACTTAGCAAGTAAATTGGAAATACAATGTGATGAATCTAACAAATTATTAACGTCTGACCAGTCTCATCTTGCCCTTTTTCCTTGTAATTCAGAACCCAAAATGCAGATGGTTCCCCATTTTGTTGGCTTCCAAAAGAATTTCGATGTCCCATTTTTATCTCCACCTCCTCCACCGCCATCGCCACCACCACCTCCTCCTGCAGTCACGGATCGCTATTTGTTTTCCCTTTCTTTACCCTTTTCAACTCGACCTACTTCTTCTTCTGCATTGTTAATCGTGAATCCAATAAACTAA

mRNA sequence

ATGGAGAAGCTTTCTGTTAAGAGTGAAAGAGAAGATAAGACAGCAAGACCAAAATCTAGCCTTGATCTATTCGATCTTGGTATGCTAGGTATGGATGTTGAAGAACAGACTCATACTTCTGAAAGTGAGAAGGAGTTATCTGTTCATAAAGAGGGAGAAAGGAGTGAAGAGATGTTGGATTCAAAATTTGATAATGTAAGTGTTTCTTCAACCAAGGAAGTGATGTATGCTCGTGAGGAAGATGATAGTAAATCAATACAATGTGTATCTAATGGAACTCATTCCTCATCTGGGGATAAGATTACTCTTGTTCAATGTTGTTTATCTAATGACGAGGAATCATTCCATTCTTGTGGTGATTCCAATTTTTTAAATCGTCGCCTTTCAAATGCTTCAGAAACTTCTTCTGCTAATGTGATAACAAATTCTACTTGTTCAGTACCAACTGCGAACTTAGCAAGTAAATTGGAAATACAATGTGATGAATCTAACAAATTATTAACGTCTGACCAGTCTCATCTTGCCCTTTTTCCTTGTAATTCAGAACCCAAAATGCAGATGGTTCCCCATTTTGTTGGCTTCCAAAAGAATTTCGATGTCCCATTTTTATCTCCACCTCCTCCACCGCCATCGCCACCACCACCTCCTCCTGCAGTCACGGATCGCTATTTGTTTTCCCTTTCTTTACCCTTTTCAACTCGACCTACTTCTTCTTCTGCATTGTTAATCGTGAATCCAATAAACTAA

Coding sequence (CDS)

ATGGAGAAGCTTTCTGTTAAGAGTGAAAGAGAAGATAAGACAGCAAGACCAAAATCTAGCCTTGATCTATTCGATCTTGGTATGCTAGGTATGGATGTTGAAGAACAGACTCATACTTCTGAAAGTGAGAAGGAGTTATCTGTTCATAAAGAGGGAGAAAGGAGTGAAGAGATGTTGGATTCAAAATTTGATAATGTAAGTGTTTCTTCAACCAAGGAAGTGATGTATGCTCGTGAGGAAGATGATAGTAAATCAATACAATGTGTATCTAATGGAACTCATTCCTCATCTGGGGATAAGATTACTCTTGTTCAATGTTGTTTATCTAATGACGAGGAATCATTCCATTCTTGTGGTGATTCCAATTTTTTAAATCGTCGCCTTTCAAATGCTTCAGAAACTTCTTCTGCTAATGTGATAACAAATTCTACTTGTTCAGTACCAACTGCGAACTTAGCAAGTAAATTGGAAATACAATGTGATGAATCTAACAAATTATTAACGTCTGACCAGTCTCATCTTGCCCTTTTTCCTTGTAATTCAGAACCCAAAATGCAGATGGTTCCCCATTTTGTTGGCTTCCAAAAGAATTTCGATGTCCCATTTTTATCTCCACCTCCTCCACCGCCATCGCCACCACCACCTCCTCCTGCAGTCACGGATCGCTATTTGTTTTCCCTTTCTTTACCCTTTTCAACTCGACCTACTTCTTCTTCTGCATTGTTAATCGTGAATCCAATAAACTAA

Protein sequence

MEKLSVKSEREDKTARPKSSLDLFDLGMLGMDVEEQTHTSESEKELSVHKEGERSEEMLDSKFDNVSVSSTKEVMYAREEDDSKSIQCVSNGTHSSSGDKITLVQCCLSNDEESFHSCGDSNFLNRRLSNASETSSANVITNSTCSVPTANLASKLEIQCDESNKLLTSDQSHLALFPCNSEPKMQMVPHFVGFQKNFDVPFLSPPPPPPSPPPPPPAVTDRYLFSLSLPFSTRPTSSSALLIVNPIN*

Homology

[Close]

BLAST of MELO3C020349 vs. NCBI nr
Match: gi|659099515|ref|XP_008450639.1| (PREDICTED: formin-like protein 11 [Cucumis melo])

HSP 1 Score: 443.7 bits (1140), Expect = 2.1e-121
Identity = 226/247 (91.50%), Postives = 230/247 (93.12%), Query Frame = 1


Query: 1   MEKLSVKSEREDKTARPKSSLDLFDLGMLGMDVEEQTHTSESEKELSVHKEGERSEEMLD 60
           MEKLSVKSEREDKTARPKSSLDLFDLGMLGMDVEEQTHTSESEKELSVHKEGERSEEMLD
Sbjct: 177 MEKLSVKSEREDKTARPKSSLDLFDLGMLGMDVEEQTHTSESEKELSVHKEGERSEEMLD 236

Query: 61  SKFDNVSVSSTKEVMYAREEDDSKSIQCVSNGTHSSSGDKITLVQCCLSNDEESFHSCGD 120
           S+FDNVSVSSTKEVMYAREEDDSKSIQCVS+GTHSSSGDK+T VQCCLS+DEESFHSCGD
Sbjct: 237 SEFDNVSVSSTKEVMYAREEDDSKSIQCVSDGTHSSSGDKVTPVQCCLSDDEESFHSCGD 296

Query: 121 SNFLNRRLSNASETSSANVITNSTCSVPTANLASKLEIQCDESNKLLTSDQSHLALFPCN 180
           SN  NRRLSNASETSSANVITNSTCSVPTANLASKLEIQCDESNKLLTSDQSHLALFPCN
Sbjct: 297 SNLSNRRLSNASETSSANVITNSTCSVPTANLASKLEIQCDESNKLLTSDQSHLALFPCN 356

Query: 181 SEPKMQMVPHFVGFQKNFDVPFLS-----PPPPPPSPPPPPPAVTDRYLFSLSLPFSTRP 240
           SEPKMQMVPH VGFQKN DVP LS     PPPPPP PPPPPPAVTDR  FSLS PFST  
Sbjct: 357 SEPKMQMVPHSVGFQKNVDVPSLSPPTPPPPPPPPPPPPPPPAVTDRCSFSLSSPFSTGS 416

Query: 241 TSSSALL 243
           TSSSALL
Sbjct: 417 TSSSALL 423

[Close]

BLAST of MELO3C020349 vs. NCBI nr
Match: gi|449435994|ref|XP_004135779.1| (PREDICTED: formin-like protein 11 [Cucumis sativus])

HSP 1 Score: 408.3 bits (1048), Expect = 9.7e-111
Identity = 209/246 (84.96%), Postives = 217/246 (88.21%), Query Frame = 1


Query: 1   MEKLSVKSEREDKTARPKSSLDLFDLGMLGMDVEEQTHTSESEKELSVHKEGERSEEMLD 60
           MEKLSVKSE+EDKTARPKSSLDLFDLG LGMDVEEQTHTSESEKELSVHKEG RSEEMLD
Sbjct: 179 MEKLSVKSEKEDKTARPKSSLDLFDLGRLGMDVEEQTHTSESEKELSVHKEGGRSEEMLD 238

Query: 61  SKFDNVSVSSTKEVMYAREEDDSKSIQCVSNGTHSSSGDKITLVQCCLSNDEESFHSCGD 120
           S+FDNVSVSSTKE+MY  EEDDSKSIQ VS GTHSSSGDK+T VQCC S+DEESFHSCGD
Sbjct: 239 SEFDNVSVSSTKEMMYVHEEDDSKSIQFVSEGTHSSSGDKVTPVQCCSSDDEESFHSCGD 298

Query: 121 SNFLNRRLSNASETSSANVITNSTCSVPTANLASKLEIQCDESNKLLTSDQSHLALFPCN 180
           SN  NRRLSNASE SSANVITNSTCSVPT  LASKLE QCDESNKLLTSDQSHLALFPCN
Sbjct: 299 SNLSNRRLSNASEISSANVITNSTCSVPTVTLASKLETQCDESNKLLTSDQSHLALFPCN 358

Query: 181 SEPKMQMVPHFVGFQKNFDVPFLSPPPPPPSPPPPPPAVTDRYLFSLSLPFSTRPTSSSA 240
           SEPKMQMVPH VGFQKN +VP LSPPPPP  PPPPPPAV DR  FSLS PFST  TSS+ 
Sbjct: 359 SEPKMQMVPHSVGFQKNANVPSLSPPPPP--PPPPPPAVMDRCSFSLSSPFSTGSTSSAL 418

Query: 241 LLIVNP 247
           L   +P
Sbjct: 419 LRSSSP 422

The following BLAST results are available for this feature:

BLAST of MELO3C020349 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659099515\|ref\|XP_008450639.1\|	2.1e-121	91.50	PREDICTED: formin-like protein 11 [Cucumis melo]	[more]
gi\|449435994\|ref\|XP_004135779.1\|	9.7e-111	84.96	PREDICTED: formin-like protein 11 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020349T1	MELO3C020349T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020349	Silver-seed gourd	carmeB0845
MELO3C020349	Cucumber (Chinese Long) v3	cucmeB135
MELO3C020349	Watermelon (97103) v2	mewmbB392
MELO3C020349	Cucumber (Gy14) v1	cgymeB445
MELO3C020349	Cucurbita maxima (Rimu)	cmameB277
MELO3C020349	Cucurbita moschata (Rifu)	cmomeB268
MELO3C020349	Wild cucumber (PI 183967)	cpimeB133
MELO3C020349	Cucumber (Chinese Long) v2	cumeB135
MELO3C020349	Watermelon (Charleston Gray)	mewcgB391
MELO3C020349	Watermelon (97103) v1	mewmB442
MELO3C020349	Cucurbita pepo (Zucchini)	cpemeB173
MELO3C020349	Cucumber (Gy14) v2	cgybmeB114