MELO3C020339 (gene) Melon (DHL92) v3.5.1

NameMELO3C020339
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionAuxin-responsive GH3 family protein
Locationchr6 : 12599249 .. 12599914 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGATCATGAAGGATTGTTGGTTGGAGAAGCTTTGAAGGCACGAAAACGTGCACTGGCTGGATTACAAAAAATCCATGAGGCGGTGGCACGGGAGAGAAAGACGATTGGCCTAGGACCGGTTTGTCCCTCTCTAAACCAATCGGCGCAAGGAATTCGATCGGGTGGCTTACGGTCATGGGATGATGGGTCTGAGATTGGTGGGCAGAATGAAATTGGGCCTACAATAAATGGGCCTTATGAAGAGGTAGTGGATGCTGTTGGGTCGAGAGAGTCTACTAATAAATTGAAGCAGGTTGGACAATCCTCTATTGGGTCAGTCATTGGGCATGAACAAAATAGGTATTCTGATGGAAATTTTTTACCGGCGAGGGATGGAATTGCATCTTCAAGAAGCCCACAGAAATTTGTATTCGAGAAAGATATCTCTTTTGGATCCATTTTGAAAACACAAAGTGAAAATTCTCCTAAGGGAATTGTTATCGAGAATGGTTTTAAGAATAATGGTACTAAATCGACATGGGCTTCGCTTTTTGGGACGTCCAATGAAGGGTCTCTTTCTTATACTCCACCTAAAGCAATTGGGGATAAAGTTGTTGTCGTTCTTCCTGAAGAGGTTATTGCTCAAAGAATTCGGGTGTGGGAAAATTCCTTAGAAGGATAA

mRNA sequence

ATGTCAGATCATGAAGGATTGTTGGTTGGAGAAGCTTTGAAGGCACGAAAACGTGCACTGGCTGGATTACAAAAAATCCATGAGGCGGTGGCACGGGAGAGAAAGACGATTGGCCTAGGACCGGTTTGTCCCTCTCTAAACCAATCGGCGCAAGGAATTCGATCGGGTGGCTTACGGTCATGGGATGATGGGTCTGAGATTGGTGGGCAGAATGAAATTGGGCCTACAATAAATGGGCCTTATGAAGAGGTAGTGGATGCTGTTGGGTCGAGAGAGTCTACTAATAAATTGAAGCAGGTTGGACAATCCTCTATTGGGTCAGTCATTGGGCATGAACAAAATAGGTATTCTGATGGAAATTTTTTACCGGCGAGGGATGGAATTGCATCTTCAAGAAGCCCACAGAAATTTGTATTCGAGAAAGATATCTCTTTTGGATCCATTTTGAAAACACAAAGTGAAAATTCTCCTAAGGGAATTGTTATCGAGAATGGTTTTAAGAATAATGGTACTAAATCGACATGGGCTTCGCTTTTTGGGACGTCCAATGAAGGGTCTCTTTCTTATACTCCACCTAAAGCAATTGGGGATAAAGTTGTTGTCGTTCTTCCTGAAGAGGTTATTGCTCAAAGAATTCGGGTGTGGGAAAATTCCTTAGAAGGATAA

Coding sequence (CDS)

ATGTCAGATCATGAAGGATTGTTGGTTGGAGAAGCTTTGAAGGCACGAAAACGTGCACTGGCTGGATTACAAAAAATCCATGAGGCGGTGGCACGGGAGAGAAAGACGATTGGCCTAGGACCGGTTTGTCCCTCTCTAAACCAATCGGCGCAAGGAATTCGATCGGGTGGCTTACGGTCATGGGATGATGGGTCTGAGATTGGTGGGCAGAATGAAATTGGGCCTACAATAAATGGGCCTTATGAAGAGGTAGTGGATGCTGTTGGGTCGAGAGAGTCTACTAATAAATTGAAGCAGGTTGGACAATCCTCTATTGGGTCAGTCATTGGGCATGAACAAAATAGGTATTCTGATGGAAATTTTTTACCGGCGAGGGATGGAATTGCATCTTCAAGAAGCCCACAGAAATTTGTATTCGAGAAAGATATCTCTTTTGGATCCATTTTGAAAACACAAAGTGAAAATTCTCCTAAGGGAATTGTTATCGAGAATGGTTTTAAGAATAATGGTACTAAATCGACATGGGCTTCGCTTTTTGGGACGTCCAATGAAGGGTCTCTTTCTTATACTCCACCTAAAGCAATTGGGGATAAAGTTGTTGTCGTTCTTCCTGAAGAGGTTATTGCTCAAAGAATTCGGGTGTGGGAAAATTCCTTAGAAGGATAA

Protein sequence

MSDHEGLLVGEALKARKRALAGLQKIHEAVARERKTIGLGPVCPSLNQSAQGIRSGGLRSWDDGSEIGGQNEIGPTINGPYEEVVDAVGSRESTNKLKQVGQSSIGSVIGHEQNRYSDGNFLPARDGIASSRSPQKFVFEKDISFGSILKTQSENSPKGIVIENGFKNNGTKSTWASLFGTSNEGSLSYTPPKAIGDKVVVVLPEEVIAQRIRVWENSLEG*
BLAST of MELO3C020339 vs. NCBI nr
Match: gi|659128572|ref|XP_008464269.1| (PREDICTED: uncharacterized protein LOC103502197 [Cucumis melo])

HSP 1 Score: 203.4 bits (516), Expect = 4.2e-49
Identity = 126/223 (56.50%), Postives = 142/223 (63.68%), Query Frame = 1

Query: 1   MSDHEGLLVGEALKARKRALAGLQKIHEAVARERKTIGLGPVCPSLNQSAQGIRSGGLRS 60
           MSD  G+LVG+A KAR RALA LQKIHEA  RERKT  LG +   LN+ AQ +R  GLR 
Sbjct: 1   MSDSGGVLVGDASKARNRALAELQKIHEAAVRERKTTDLGSIRLPLNRPAQKVRPTGLRP 60

Query: 61  WDDGSEIGGQNEIGPTINGPYEEVVDAVGSRESTNKLKQVGQSSIGSVIGHEQNRYSDGN 120
              GS + GQNEIGP      EE + A         LK  G+SS G +IG +Q R S G 
Sbjct: 61  RKVGSALDGQNEIGPR-----EEGIAAGPRGLEFGGLKPAGESSNGPLIGFDQIRKSGGK 120

Query: 121 FLPARDGIASSRSPQKFVFEKDISFGSILKTQSENSPKGIVIENGFKNN--GTKSTWASL 180
             PA  G+        F  EKDISFGSI K +SEN PK  V+ENG   +  G+ STWASL
Sbjct: 121 DEPASGGLL-------FSTEKDISFGSIWKIRSENVPK--VVENGLHKHTIGSNSTWASL 180

Query: 181 FGTSNEGSLSYTPPKAIGDKVVVVLPEEVIAQRIRVWENSLEG 222
           F TS EGSL YTPPKAIGDK+VVV PEEVI Q IRVWENSL G
Sbjct: 181 FRTSTEGSLPYTPPKAIGDKIVVVPPEEVIVQGIRVWENSLVG 209

BLAST of MELO3C020339 vs. NCBI nr
Match: gi|659114595|ref|XP_008457134.1| (PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 5.4e-20
Identity = 67/139 (48.20%), Postives = 85/139 (61.15%), Query Frame = 1

Query: 82  EEVVDAVGSRESTNKLKQVGQSSIGSVIGHEQNRYSDGNFLPARDGIASSRSPQKFVFEK 141
           EEVV  +   ++ + LK+ GQ SIG + G E+   S G+        +   S +    ++
Sbjct: 67  EEVV--MDEFDNISGLKRDGQHSIGPLFGIEEIGKSGGS--------SELNSGRPVSTDQ 126

Query: 142 DISFGSILKTQSENSPKGIVIENGFKNNGTKSTWASLFGTSNEGSLSYTPPKAIGDKVVV 201
            ISFGSI K  S N     V+ENG K  G+ STWASLFGTS +GSL YT PK IGD ++V
Sbjct: 127 GISFGSISKNLSVN-----VVENGPKTTGSNSTWASLFGTSPDGSLPYTQPKTIGDNIIV 186

Query: 202 VLPEEVIAQRIRVWENSLE 221
           V  EEVIAQ IRVWENSL+
Sbjct: 187 VPSEEVIAQNIRVWENSLK 190

BLAST of MELO3C020339 vs. NCBI nr
Match: gi|659126448|ref|XP_008463187.1| (PREDICTED: uncharacterized protein LOC103501395 [Cucumis melo])

HSP 1 Score: 94.4 bits (233), Expect = 2.8e-16
Identity = 66/165 (40.00%), Postives = 88/165 (53.33%), Query Frame = 1

Query: 69  GQNEIGPTINGPYEEVVDAVGSRESTNKLKQVG------QSSIG----SVIGHEQNRYSD 128
           G N +GP + GP  E     GS+E+  +   +G      ++ IG    SV G + +  S 
Sbjct: 3   GLNVVGPDLIGPDVESEGKRGSKEAGRRDDGLGSFGPRNETVIGRCGSSVCGQKLDDISS 62

Query: 129 GNFLPARDGIASSRSPQKFVFEKDISFGSILKTQSENSPKGIVIENGFKNN--GTKSTWA 188
           G+ +   D   S           ++S G +L  Q+ N     V++NG       +KSTWA
Sbjct: 63  GSRIEFGDFFNSGEDEPS-----NVSSGCVLNNQNANVSN--VVQNGINKQLIDSKSTWA 122

Query: 189 SLFGTSNEGSLSYTPPKAIGDKVVVVLPEEVIAQRIRVWENSLEG 222
           SLFGTS+E SL YT PK IGDK+VV  PEEVI Q I+VWENSL G
Sbjct: 123 SLFGTSSEESLLYTLPKIIGDKIVVTPPEEVIDQGIKVWENSLVG 160

BLAST of MELO3C020339 vs. NCBI nr
Match: gi|659121150|ref|XP_008460523.1| (PREDICTED: uncharacterized protein LOC103499323 isoform X1 [Cucumis melo])

HSP 1 Score: 92.4 bits (228), Expect = 1.0e-15
Identity = 73/194 (37.63%), Postives = 92/194 (47.42%), Query Frame = 1

Query: 36  TIGLGPVCPSLNQSAQGIRSGGLRSWDDGSEIGGQNEIGPTIN-------GPY-EEVVDA 95
           T  +GP   S NQ   G +  GL+    G E+GG    G  +N        P+  E    
Sbjct: 111 TAEIGPPLTSKNQKEIGPKLSGLQI--GGGEVGGSEFGGLNVNLNSAEFGRPFASENQTE 170

Query: 96  VGSRESTNKLKQVGQSSIGSVIGHEQNRYSDGNFLPARDGIASSRSPQKFVFEKDISFGS 155
           +G   ++  L+  G+ + G   G +     D   L A D I  +  P             
Sbjct: 171 IGPGVASINLRGSGRKNDGCPNGPQ----IDAANLVAHDDIQPNTDP-----------AG 230

Query: 156 ILKTQSENSPKGIVIENGFKNNGTKSTWASLFGTSNEGSLSYTPPKAIGDKVVVVLPEEV 215
           +LK  + N        N F  N  KSTWASLFGT+ EGSL YT PKAIGDK+VV+  EEV
Sbjct: 231 VLKNPTTNV-------NNFAANVPKSTWASLFGTATEGSLPYTLPKAIGDKIVVIPTEEV 280

Query: 216 IAQRIRVWENSLEG 222
           I Q IRVWENSL G
Sbjct: 291 IDQGIRVWENSLVG 280

BLAST of MELO3C020339 vs. NCBI nr
Match: gi|659121150|ref|XP_008460523.1| (PREDICTED: uncharacterized protein LOC103499323 isoform X1 [Cucumis melo])

HSP 1 Score: 64.3 bits (155), Expect = 3.0e-07
Identity = 42/90 (46.67%), Postives = 51/90 (56.67%), Query Frame = 1

Query: 1  MSDHEGLLVGEALKARKRALAGLQKIHEAVARERKTIGLGPVCPSLNQSAQGIRSGGLRS 60
          M +   + V +A K RKRALAGLQKIHEA A ERKTI L  V   LN+  Q  RS G  S
Sbjct: 1  MIESGDVTVSDASKTRKRALAGLQKIHEAAACERKTIDLDAVRLPLNRPTQKNRSAGFTS 60

Query: 61 WDDGSEIGGQNEIGPTINGPYEEVVDAVGS 91
           +  S + G + I P ++G   E  D  GS
Sbjct: 61 VE--SAVSGMSSIEPKLSGLQIEGGDVSGS 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|659128572|ref|XP_008464269.1|4.2e-4956.50PREDICTED: uncharacterized protein LOC103502197 [Cucumis melo][more]
gi|659114595|ref|XP_008457134.1|5.4e-2048.20PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo][more]
gi|659126448|ref|XP_008463187.1|2.8e-1640.00PREDICTED: uncharacterized protein LOC103501395 [Cucumis melo][more]
gi|659121150|ref|XP_008460523.1|1.0e-1537.63PREDICTED: uncharacterized protein LOC103499323 isoform X1 [Cucumis melo][more]
gi|659121150|ref|XP_008460523.1|3.0e-0746.67PREDICTED: uncharacterized protein LOC103499323 isoform X1 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020339T1MELO3C020339T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None