MELO3C020335 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020335
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	1-deoxy-D-xylulose-5-phosphate reductoisomerase
Location	chr6 : 12724093 .. 12724380 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAACCTACCGATATACCATCGGCCAGTGTGCCCCAGAATTTGTTACATCCTAGTCATTCCCTTCCTATCAAGGTATCTTCAATTTCTACCACAAATGAAAATAAGGGAGTTAGTATTACCAGATCTCATGAGGTTCATGGAAAATCTAGTACAGATGGGACATCCTCAACTGCTGGGAAAAGTGGAAATCTCTCTCTTGATGCTTTAGCAAAAGCTAAGAAAGCTTTACAGAATCAGAAAGAATTAGCCGAGAAGTTGAAAAAAATTCCCCTGGTAAGTTAG

mRNA sequence

ATGGTGGAACCTACCGATATACCATCGGCCAGTGTGCCCCAGAATTTGTTACATCCTAGTCATTCCCTTCCTATCAAGGTATCTTCAATTTCTACCACAAATGAAAATAAGGGAGTTAGTATTACCAGATCTCATGAGGTTCATGGAAAATCTAGTACAGATGGGACATCCTCAACTGCTGGGAAAAGTGGAAATCTCTCTCTTGATGCTTTAGCAAAAGCTAAGAAAGCTTTACAGAATCAGAAAGAATTAGCCGAGAAGTTGAAAAAAATTCCCCTGGTAAGTTAG

Coding sequence (CDS)

ATGGTGGAACCTACCGATATACCATCGGCCAGTGTGCCCCAGAATTTGTTACATCCTAGTCATTCCCTTCCTATCAAGGTATCTTCAATTTCTACCACAAATGAAAATAAGGGAGTTAGTATTACCAGATCTCATGAGGTTCATGGAAAATCTAGTACAGATGGGACATCCTCAACTGCTGGGAAAAGTGGAAATCTCTCTCTTGATGCTTTAGCAAAAGCTAAGAAAGCTTTACAGAATCAGAAAGAATTAGCCGAGAAGTTGAAAAAAATTCCCCTGGTAAGTTAG

Protein sequence

MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQNQKELAEKLKKIPLVS*

Homology

[Close]

BLAST of MELO3C020335 vs. TrEMBL
Match: A0A0A0KLQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G177130 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 2.8e-41
Identity = 89/94 (94.68%), Postives = 93/94 (98.94%), Query Frame = 1


Query: 1   MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA 60
           MVEPTD+PSASVPQNLLHPSHSLPIKVSSISTTNEN+GVSITRSHEVHGKSSTDGTSSTA
Sbjct: 273 MVEPTDMPSASVPQNLLHPSHSLPIKVSSISTTNENRGVSITRSHEVHGKSSTDGTSSTA 332

Query: 61  GKSGNLSLDALAKAKKALQNQKELAEKLKKIPLV 95
           GKSGNLSLDALAKAKKALQ QKELAEKLK+IPL+
Sbjct: 333 GKSGNLSLDALAKAKKALQMQKELAEKLKRIPLM 366

[Close]

BLAST of MELO3C020335 vs. TrEMBL
Match: W9RFK8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017259 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 4.5e-31
Identity = 74/94 (78.72%), Postives = 82/94 (87.23%), Query Frame = 1


Query: 2   VEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAG 61
           +EP  + S S P+  L PSH LP KVSSISTT+ENKGVSITRSHEV GKSSTDGTSSTAG
Sbjct: 199 LEPLAVASGSFPETSLAPSHPLPTKVSSISTTHENKGVSITRSHEVPGKSSTDGTSSTAG 258

Query: 62  KSGNLSLDALAKAKKALQNQKELAEKLKKIPLVS 96
           KSG+LSLDALAKAKKALQ QKELAEKLKKIP+++
Sbjct: 259 KSGSLSLDALAKAKKALQMQKELAEKLKKIPVLN 292

[Close]

BLAST of MELO3C020335 vs. TrEMBL
Match: D7T479_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g03760 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.1e-28
Identity = 71/93 (76.34%), Postives = 78/93 (83.87%), Query Frame = 1


Query: 3   EPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGK 62
           EP ++    VP+  L PS   P KVSSISTTNENKGVSITRSHEV GKSSTDGT+S AGK
Sbjct: 225 EPLNMAPRLVPETSLAPSLPPPTKVSSISTTNENKGVSITRSHEVPGKSSTDGTTSAAGK 284

Query: 63  SGNLSLDALAKAKKALQNQKELAEKLKKIPLVS 96
           SGNLSLDALAKAKKALQ QKEL+EKLKKIPL++
Sbjct: 285 SGNLSLDALAKAKKALQMQKELSEKLKKIPLLN 317

[Close]

BLAST of MELO3C020335 vs. TrEMBL
Match: M5X740_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001191mg PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.6e-28
Identity = 70/91 (76.92%), Postives = 75/91 (82.42%), Query Frame = 1


Query: 2   VEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAG 61
           +EPT+  S  VP+    PSH LP KVSSI TTNENKGVSITRSHEVHGKSSTDGTSSTAG
Sbjct: 231 LEPTNA-SRIVPETSFAPSHPLPTKVSSIYTTNENKGVSITRSHEVHGKSSTDGTSSTAG 290

Query: 62  KSGNLSLDALAKAKKALQNQKELAEKLKKIP 93
           +SGNLSLD + K KKALQ QKEL EKLKKIP
Sbjct: 291 RSGNLSLDDVEKIKKALQKQKELTEKLKKIP 320

[Close]

BLAST of MELO3C020335 vs. TrEMBL
Match: A0A059BGZ5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02772 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-27
Identity = 68/93 (73.12%), Postives = 78/93 (83.87%), Query Frame = 1


Query: 3   EPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGK 62
           EP  + S ++P + L  +H  P KVSSISTTNENKGVSIT SHEV GK+STDGTSS AGK
Sbjct: 251 EPPTMTSRTLPSSTLTSTHPFPTKVSSISTTNENKGVSITGSHEVPGKTSTDGTSSAAGK 310

Query: 63  SGNLSLDALAKAKKALQNQKELAEKLKKIPLVS 96
           SG+LSLDALAKAKKALQ QKEL+EKLKKIPL++
Sbjct: 311 SGSLSLDALAKAKKALQIQKELSEKLKKIPLLN 343

[Close]

BLAST of MELO3C020335 vs. TAIR10
Match: AT1G28060.1 (AT1G28060.1 Pre-mRNA-splicing factor 3)

HSP 1 Score: 81.3 bits (199), Expect = 3.7e-16
Identity = 52/81 (64.20%), Postives = 59/81 (72.84%), Query Frame = 1


Query: 19  PSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTS-STAGK-SGNLSLDA---LAK 78
           PS +L  KVSSISTT+ENK  S+ RSHEV GKSSTDG   STAGK S NL LD+    AK
Sbjct: 175 PSQTLLTKVSSISTTDENK-ASVVRSHEVPGKSSTDGRPLSTAGKSSANLPLDSSALAAK 234

Query: 79  AKKALQNQKELAEKLKKIPLV 95
           A+KALQ QK LA++LK +PL+
Sbjct: 235 ARKALQLQKGLADRLKNLPLL 254

[Close]

BLAST of MELO3C020335 vs. NCBI nr
Match: gi|449451683|ref|XP_004143591.1| (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 4.1e-41
Identity = 89/94 (94.68%), Postives = 93/94 (98.94%), Query Frame = 1


Query: 1   MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA 60
           MVEPTD+PSASVPQNLLHPSHSLPIKVSSISTTNEN+GVSITRSHEVHGKSSTDGTSSTA
Sbjct: 273 MVEPTDMPSASVPQNLLHPSHSLPIKVSSISTTNENRGVSITRSHEVHGKSSTDGTSSTA 332

Query: 61  GKSGNLSLDALAKAKKALQNQKELAEKLKKIPLV 95
           GKSGNLSLDALAKAKKALQ QKELAEKLK+IPL+
Sbjct: 333 GKSGNLSLDALAKAKKALQMQKELAEKLKRIPLM 366

[Close]

BLAST of MELO3C020335 vs. NCBI nr
Match: gi|659123326|ref|XP_008461606.1| (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo])

HSP 1 Score: 175.3 bits (443), Expect = 5.3e-41
Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = 1


Query: 1   MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA 60
           MVEPTDIPSASVPQNLLHPS SLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA
Sbjct: 273 MVEPTDIPSASVPQNLLHPSPSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA 332

Query: 61  GKSGNLSLDALAKAKKALQNQKELAEKLKKIPLV 95
           GKSGNLSLDALAKAKKALQ QKELAEKLKKIPL+
Sbjct: 333 GKSGNLSLDALAKAKKALQMQKELAEKLKKIPLM 366

[Close]

BLAST of MELO3C020335 vs. NCBI nr
Match: gi|703118018|ref|XP_010101509.1| (hypothetical protein L484_017259 [Morus notabilis])

HSP 1 Score: 141.7 bits (356), Expect = 6.5e-31
Identity = 74/94 (78.72%), Postives = 82/94 (87.23%), Query Frame = 1


Query: 2   VEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAG 61
           +EP  + S S P+  L PSH LP KVSSISTT+ENKGVSITRSHEV GKSSTDGTSSTAG
Sbjct: 199 LEPLAVASGSFPETSLAPSHPLPTKVSSISTTHENKGVSITRSHEVPGKSSTDGTSSTAG 258

Query: 62  KSGNLSLDALAKAKKALQNQKELAEKLKKIPLVS 96
           KSG+LSLDALAKAKKALQ QKELAEKLKKIP+++
Sbjct: 259 KSGSLSLDALAKAKKALQMQKELAEKLKKIPVLN 292

[Close]

BLAST of MELO3C020335 vs. NCBI nr
Match: gi|731411806|ref|XP_002275798.3| (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Vitis vinifera])

HSP 1 Score: 132.9 bits (333), Expect = 3.0e-28
Identity = 71/93 (76.34%), Postives = 78/93 (83.87%), Query Frame = 1


Query: 3   EPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGK 62
           EP ++    VP+  L PS   P KVSSISTTNENKGVSITRSHEV GKSSTDGT+S AGK
Sbjct: 225 EPLNMAPRLVPETSLAPSLPPPTKVSSISTTNENKGVSITRSHEVPGKSSTDGTTSAAGK 284

Query: 63  SGNLSLDALAKAKKALQNQKELAEKLKKIPLVS 96
           SGNLSLDALAKAKKALQ QKEL+EKLKKIPL++
Sbjct: 285 SGNLSLDALAKAKKALQMQKELSEKLKKIPLLN 317

[Close]

BLAST of MELO3C020335 vs. NCBI nr
Match: gi|596050480|ref|XP_007220565.1| (hypothetical protein PRUPE_ppa001191mg [Prunus persica])

HSP 1 Score: 132.1 bits (331), Expect = 5.1e-28
Identity = 70/91 (76.92%), Postives = 75/91 (82.42%), Query Frame = 1


Query: 2   VEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAG 61
           +EPT+  S  VP+    PSH LP KVSSI TTNENKGVSITRSHEVHGKSSTDGTSSTAG
Sbjct: 231 LEPTNA-SRIVPETSFAPSHPLPTKVSSIYTTNENKGVSITRSHEVHGKSSTDGTSSTAG 290

Query: 62  KSGNLSLDALAKAKKALQNQKELAEKLKKIP 93
           +SGNLSLD + K KKALQ QKEL EKLKKIP
Sbjct: 291 RSGNLSLDDVEKIKKALQKQKELTEKLKKIP 320

The following BLAST results are available for this feature:

BLAST of MELO3C020335 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLQ4_CUCSA	2.8e-41	94.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G177130 PE=4 SV=1	[more]
W9RFK8_9ROSA	4.5e-31	78.72	Uncharacterized protein OS=Morus notabilis GN=L484_017259 PE=4 SV=1	[more]
D7T479_VITVI	2.1e-28	76.34	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g03760 PE=4 SV=...	[more]
M5X740_PRUPE	3.6e-28	76.92	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001191mg PE=4 SV=1	[more]
A0A059BGZ5_EUCGR	1.4e-27	73.12	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02772 PE=4 SV=1	[more]

BLAST of MELO3C020335 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G28060.1	3.7e-16	64.20	Pre-mRNA-splicing factor 3	[more]

BLAST of MELO3C020335 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449451683\|ref\|XP_004143591.1\|	4.1e-41	94.68	PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis sativus]	[more]
gi\|659123326\|ref\|XP_008461606.1\|	5.3e-41	96.81	PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo]	[more]
gi\|703118018\|ref\|XP_010101509.1\|	6.5e-31	78.72	hypothetical protein L484_017259 [Morus notabilis]	[more]
gi\|731411806\|ref\|XP_002275798.3\|	3.0e-28	76.34	PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Vitis vinifera]	[more]
gi\|596050480\|ref\|XP_007220565.1\|	5.1e-28	76.92	hypothetical protein PRUPE_ppa001191mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020335T1	MELO3C020335T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 68..91 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020335	Watermelon (Charleston Gray)	mewcgB427
MELO3C020335	Watermelon (97103) v1	mewmB461
MELO3C020335	Cucurbita pepo (Zucchini)	cpemeB529
MELO3C020335	Cucurbita pepo (Zucchini)	cpemeB586
MELO3C020335	Bottle gourd (USVL1VR-Ls)	lsimeB368
MELO3C020335	Cucumber (Gy14) v2	cgybmeB210
MELO3C020335	Silver-seed gourd	carmeB0181
MELO3C020335	Silver-seed gourd	carmeB0756
MELO3C020335	Cucumber (Chinese Long) v3	cucmeB247
MELO3C020335	Watermelon (97103) v2	mewmbB434
MELO3C020335	Wax gourd	mewgoB530
MELO3C020335	Cucumber (Gy14) v1	cgymeB144
MELO3C020335	Cucurbita maxima (Rimu)	cmameB243
MELO3C020335	Cucurbita maxima (Rimu)	cmameB431
MELO3C020335	Cucurbita moschata (Rifu)	cmomeB231
MELO3C020335	Cucurbita moschata (Rifu)	cmomeB421
MELO3C020335	Wild cucumber (PI 183967)	cpimeB241