MELO3C020319.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C020319.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionProtein TIC 214
Locationchr06 : 14220172 .. 14220843 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACCAAGAGGACGAGGAAGAGCTGCAAATAGATTAAGGACTACAATTAAGCCCATTATGGACCCAAAAGCTCATTCGATCAATCCAAATGTGAGGAGAGAACAAGAAGAGGTGTTATATGATAGAGTGACACAAAGGTTGATTGATGAATTATCAAGAGAAATTGAGATGAAATATGGAATTGAAAGATCAAAAGCATTAGGAACCATAAAATTTAGAAACGGTAGAGCCAGAGTAAGCAGAGAAGTGGATTAGGACGCTGGAAAAATGTTTTAGGGACATACGGTGTATAGAAGTAAGAAACATAGATTTGATTGTAAGGAGGAGGAGGATGATAGAAGTAAGAAATGTAGATTTGATTGTAACGAGGAGGAGGGGAAGGGGAAGAAGAAGAAGAAGGGGAAGGCGAAGAAGTTAATTGAAGAAGGAGAAGGCGAAGGCGAAGGCGAAGGCGAAGAAGGAGAAGACGAAGAAGAAGGTGAAGAAGAAGAAGAAGAAGGCGAAGGCAAAGAAGAAGACGAAGAAGACAAAGAAGAAGAAGACGAAGAAGATGAGGAAGAAGAAGACGACGAGGAAGAAGAAAACAACGAAGAAGAAGAAGACAACAAAGACGATGAAGAAGAAGAAGACAACGAAGAAGTGTTATTTGTTACTTCTTCTTTCAAGTAG

mRNA sequence

ATGGCACCAAGAGGACGAGGAAGAGCTGCAAATAGATTAAGGACTACAATTAAGCCCATTATGGACCCAAAAGCTCATTCGATCAATCCAAATGTGAGGAGAGAACAAGAAGAGGTGTTATATGATAGAGTGACACAAAGGTTGATTGATGAATTATCAAGAGAAATTGAGATGAAATATGGAATTGAAAGATCAAAAGCATTAGGAACCATAAAATTTAGAAACGGTAGAGCCAGAGGACATACGGTGTATAGAAGTAAGAAACATAGATTTGATTGTAAGGAGGAGGAGGATGATAGAAGTAAGAAATGTAGATTTGATTGTAACGAGGAGGAGGGGAAGGGGAAGAAGAAGAAGAAGGGGAAGGCGAAGAAGTTAATTGAAGAAGGAGAAGGCGAAGGCGAAGGCGAAGGCGAAGAAGGAGAAGACGAAGAAGAAGGTGAAGAAGAAGAAGAAGAAGGCGAAGGCAAAGAAGAAGACGAAGAAGACAAAGAAGAAGAAGACGAAGAAGATGAGGAAGAAGAAGACGACGAGGAAGAAGAAAACAACGAAGAAGAAGAAGACAACAAAGACGATGAAGAAGAAGAAGACAACGAAGAAGTGTTATTTGTTACTTCTTCTTTCAAGTAG

Coding sequence (CDS)

ATGGCACCAAGAGGACGAGGAAGAGCTGCAAATAGATTAAGGACTACAATTAAGCCCATTATGGACCCAAAAGCTCATTCGATCAATCCAAATGTGAGGAGAGAACAAGAAGAGGTGTTATATGATAGAGTGACACAAAGGTTGATTGATGAATTATCAAGAGAAATTGAGATGAAATATGGAATTGAAAGATCAAAAGCATTAGGAACCATAAAATTTAGAAACGGTAGAGCCAGAGGACATACGGTGTATAGAAGTAAGAAACATAGATTTGATTGTAAGGAGGAGGAGGATGATAGAAGTAAGAAATGTAGATTTGATTGTAACGAGGAGGAGGGGAAGGGGAAGAAGAAGAAGAAGGGGAAGGCGAAGAAGTTAATTGAAGAAGGAGAAGGCGAAGGCGAAGGCGAAGGCGAAGAAGGAGAAGACGAAGAAGAAGGTGAAGAAGAAGAAGAAGAAGGCGAAGGCAAAGAAGAAGACGAAGAAGACAAAGAAGAAGAAGACGAAGAAGATGAGGAAGAAGAAGACGACGAGGAAGAAGAAAACAACGAAGAAGAAGAAGACAACAAAGACGATGAAGAAGAAGAAGACAACGAAGAAGTGTTATTTGTTACTTCTTCTTTCAAGTAG

Protein sequence

MAPRGRGRAANRLRTTIKPIMDPKAHSINPNVRREQEEVLYDRVTQRLIDELSREIEMKYGIERSKALGTIKFRNGRARGHTVYRSKKHRFDCKEEEDDRSKKCRFDCNEEEGKGKKKKKGKAKKLIEEGEGEGEGEGEEGEDEEEGEEEEEEGEGKEEDEEDKEEEDEEDEEEEDDEEEENNEEEEDNKDDEEEEDNEEVLFVTSSFK
Homology
[Close]
BLAST of MELO3C020319.2 vs. NCBI nr
Match: KGN61535.1 (hypothetical protein Csa_2G163160 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 2.3e-08
Identity = 30/57 (52.63%), Postives = 45/57 (78.95%), Query Frame = 0 

Query: 17 IKPIMDPKAHSINPNVRREQEEVLYDRVTQRLIDELSREIEMKYGIERSKALGTIKF 74
          ++P +D +AH++NPN RRE+EE LYDR  QRLI+ L+++++  +GIER KALG  +F
Sbjct: 1  MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEF 57

[Close]
BLAST of MELO3C020319.2 vs. NCBI nr
Match: KGN58005.1 (hypothetical protein Csa_3G426910 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 4.3e-07
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 0 

Query: 21 MDPKAHSINPNVRREQEEVLYDRVTQRLIDELSREIEMKYGIERSKALGTIKF 74
          M+ +AHS+N N  +EQ+EV+YDRVTQRL+D ++ + E K+GIER KALG  +F
Sbjct: 1  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEF 53

[Close]
BLAST of MELO3C020319.2 vs. TrEMBL
Match: tr|A0A0A0LI31|A0A0A0LI31_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G163160 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.5e-08
Identity = 30/57 (52.63%), Postives = 45/57 (78.95%), Query Frame = 0 

Query: 17 IKPIMDPKAHSINPNVRREQEEVLYDRVTQRLIDELSREIEMKYGIERSKALGTIKF 74
          ++P +D +AH++NPN RRE+EE LYDR  QRLI+ L+++++  +GIER KALG  +F
Sbjct: 1  MEPTIDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEF 57

[Close]
BLAST of MELO3C020319.2 vs. TrEMBL
Match: tr|A0A0A0L7X2|A0A0A0L7X2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426910 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.8e-07
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 0 

Query: 21 MDPKAHSINPNVRREQEEVLYDRVTQRLIDELSREIEMKYGIERSKALGTIKF 74
          M+ +AHS+N N  +EQ+EV+YDRVTQRL+D ++ + E K+GIER KALG  +F
Sbjct: 1  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEF 53

The following BLAST results are available for this feature:
BLAST of MELO3C020319.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61535.12.3e-0852.63hypothetical protein Csa_2G163160 [Cucumis sativus][more]
KGN58005.14.3e-0756.60hypothetical protein Csa_3G426910 [Cucumis sativus][more]
BLAST of MELO3C020319.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C020319.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C020319.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LI31|A0A0A0LI31_CUCSA1.5e-0852.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G163160 PE=4 SV=1[more]
tr|A0A0A0L7X2|A0A0A0L7X2_CUCSA2.8e-0756.60Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426910 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0009536 plastid
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020319.2.1MELO3C020319.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 157..202
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..201
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..209

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C020319.2Cucumber (Gy14) v2cgybmedB213
MELO3C020319.2Cucumber (Gy14) v2cgybmedB215
MELO3C020319.2Cucumber (Gy14) v1cgymedB143
MELO3C020319.2Cucumber (Gy14) v1cgymedB144
MELO3C020319.2Cucurbita maxima (Rimu)cmamedB274
MELO3C020319.2Cucurbita maxima (Rimu)cmamedB496
MELO3C020319.2Cucurbita moschata (Rifu)cmomedB261
MELO3C020319.2Cucurbita moschata (Rifu)cmomedB483
MELO3C020319.2Cucurbita pepo (Zucchini)cpemedB630
MELO3C020319.2Cucurbita pepo (Zucchini)cpemedB694
MELO3C020319.2Wild cucumber (PI 183967)cpimedB237
MELO3C020319.2Wild cucumber (PI 183967)cpimedB239
MELO3C020319.2Cucumber (Chinese Long) v2cumedB237
MELO3C020319.2Cucumber (Chinese Long) v2cumedB238
MELO3C020319.2Bottle gourd (USVL1VR-Ls)lsimedB384
MELO3C020319.2Watermelon (Charleston Gray)medwcgB417
MELO3C020319.2Watermelon (97103) v1medwmB448
MELO3C020319.2Silver-seed gourdcarmedB0185
MELO3C020319.2Silver-seed gourdcarmedB0771
MELO3C020319.2Cucumber (Chinese Long) v3cucmedB244
MELO3C020319.2Cucumber (Chinese Long) v3cucmedB246
MELO3C020319.2Watermelon (97103) v2medwmbB424
MELO3C020319.2Wax gourdmedwgoB531