MELO3C020300 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C020300
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionChromosomal replication initiator protein DnaA
Locationchr6 : 13450568 .. 13451137 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATCTCCTTGGCACTCGATCAATTAGAAAACAACATGAATTTAACGTGGCCGCGAATTGGAAAAAATCAACTAAGAATCACCAATTACCCCCAACAAAGACAATATCTGAACGTGCAACAACAAATTCCTCCAAGACAAGTCCAAAATTTGCCACTGATTATCTAAGAACAACCAAGAAGGCAAGTTTGCAGAAAAGATACCACAAAAACAACATGCCAACAATTGAGGAAAATGAGCCGAGTAAAGAAGATGAGGAAGAAATCAACTCAAAGAAGTGGGAATTTTATAGTATAAACCGCAAAGAAGAAGAAATTGCTTGTGGGAATAAAAACGACAGAAACATTTTCAATTTAGAAATTGTGCAAAAACCTAATTTGAAAGAGAAAATGACGTCGACAGTTGAGGAAAAATCATCCAAAATTTCAAACACAAAAGAAAACATGATCGGAACTCTAAGCGTTGAAGTGAAAATTGTTGACAACAAAGAATGGGGAGCGACCGAATTACCTACTTTGGACGAAGAAGATGAAGTCGGCAGCGTTGCAGAGGAAACCAAACCAATCTAA

mRNA sequence

ATGCATCTCCTTGGCACTCGATCAATTAGAAAACAACATGAATTTAACGTGGCCGCGAATTGGAAAAAATCAACTAAGAATCACCAATTACCCCCAACAAAGACAATATCTGAACGTGCAACAACAAATTCCTCCAAGACAAGTCCAAAATTTGCCACTGATTATCTAAGAACAACCAAGAAGGCAAGTTTGCAGAAAAGATACCACAAAAACAACATGCCAACAATTGAGGAAAATGAGCCGAGTAAAGAAGATGAGGAAGAAATCAACTCAAAGAAGTGGGAATTTTATAGTATAAACCGCAAAGAAGAAGAAATTGCTTGTGGGAATAAAAACGACAGAAACATTTTCAATTTAGAAATTGTGCAAAAACCTAATTTGAAAGAGAAAATGACGTCGACAGTTGAGGAAAAATCATCCAAAATTTCAAACACAAAAGAAAACATGATCGGAACTCTAAGCGTTGAAGTGAAAATTGTTGACAACAAAGAATGGGGAGCGACCGAATTACCTACTTTGGACGAAGAAGATGAAGTCGGCAGCGTTGCAGAGGAAACCAAACCAATCTAA

Coding sequence (CDS)

ATGCATCTCCTTGGCACTCGATCAATTAGAAAACAACATGAATTTAACGTGGCCGCGAATTGGAAAAAATCAACTAAGAATCACCAATTACCCCCAACAAAGACAATATCTGAACGTGCAACAACAAATTCCTCCAAGACAAGTCCAAAATTTGCCACTGATTATCTAAGAACAACCAAGAAGGCAAGTTTGCAGAAAAGATACCACAAAAACAACATGCCAACAATTGAGGAAAATGAGCCGAGTAAAGAAGATGAGGAAGAAATCAACTCAAAGAAGTGGGAATTTTATAGTATAAACCGCAAAGAAGAAGAAATTGCTTGTGGGAATAAAAACGACAGAAACATTTTCAATTTAGAAATTGTGCAAAAACCTAATTTGAAAGAGAAAATGACGTCGACAGTTGAGGAAAAATCATCCAAAATTTCAAACACAAAAGAAAACATGATCGGAACTCTAAGCGTTGAAGTGAAAATTGTTGACAACAAAGAATGGGGAGCGACCGAATTACCTACTTTGGACGAAGAAGATGAAGTCGGCAGCGTTGCAGAGGAAACCAAACCAATCTAA

Protein sequence

MHLLGTRSIRKQHEFNVAANWKKSTKNHQLPPTKTISERATTNSSKTSPKFATDYLRTTKKASLQKRYHKNNMPTIEENEPSKEDEEEINSKKWEFYSINRKEEEIACGNKNDRNIFNLEIVQKPNLKEKMTSTVEEKSSKISNTKENMIGTLSVEVKIVDNKEWGATELPTLDEEDEVGSVAEETKPI*
Homology
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BLAST of MELO3C020300 vs. Swiss-Prot
Match: UNC89_CAEEL (Muscle M-line assembly protein unc-89 OS=Caenorhabditis elegans GN=unc-89 PE=1 SV=3)

HSP 1 Score: 52.4 bits (124), Expect = 6.4e-06
Identity = 47/173 (27.17%), Postives = 75/173 (43.35%), Query Frame = 1 

Query: 22   KKSTKNHQLPPTKTISE-RATTNSSKTSPKFATDYLRTTKKASLQKRYHKNNMPTIEENE 81
            +KS +    P  K+ +E ++ T   K+  K   + L++ K+ S +K   K   PT +E  
Sbjct: 1581 EKSPEKPASPTKKSENEVKSPTKKEKSPEKSVVEELKSPKEKSPEKADDKPKSPTKKEKS 1640

Query: 82   PSKEDEEEINSKKWEFYSINRKEEEIACGNKNDRNIFNL--EIVQKPNLKEKMTSTVEEK 141
            P K   E++ S   +  S  + EE+     K + +      + V+ P  KEK   TVEEK
Sbjct: 1641 PEKSATEDVKSPTKKEKSPEKVEEKPTSPTKKESSPTKKTDDEVKSPTKKEKSPQTVEEK 1700

Query: 142  SSKISNTKENMIGTLSVEVKIVDNKEWGATE----LPTLDEEDEVGSVAEETK 188
             +  +  +++   ++  EVK    K     E     PT  E+    S AEE K
Sbjct: 1701 PASPTKKEKSPEKSVVEEVKSPKEKSPEKAEEKPKSPTKKEKSPEKSAAEEVK 1753


HSP 2 Score: 49.3 bits (116), Expect = 5.4e-05
Identity = 45/172 (26.16%), Postives = 68/172 (39.53%), Query Frame = 1 

Query: 22   KKSTKNHQLPPTKTISERATTNSSKTSPKFATDYLRTTKKASLQKRYHKNNMPTIEENEP 81
            K  TK  + P T      + T   K+  K   + +++ K+ S +K   K   PT +E  P
Sbjct: 1685 KSPTKKEKSPQTVEEKPASPTKKEKSPEKSVVEEVKSPKEKSPEKAEEKPKSPTKKEKSP 1744

Query: 82   SKEDEEEINS-KKWEFYSINRKEEEIACGNKNDRNIFNL--EIVQKPNLKEKMTSTVEEK 141
             K   EE+ S  K E       EE+     K + +   +  + V+ P  KEK    VEEK
Sbjct: 1745 EKSAAEEVKSPTKKEKSPEKSAEEKPKSPTKKESSPVKMADDEVKSPTKKEKSPEKVEEK 1804

Query: 142  SSKISNTKENMIGTLSVEVKIVDNKEWGATE--LPTLDEEDEVGSVAEETKP 189
             +  +  ++    + + E+K    KE   +     T DE  E      E KP
Sbjct: 1805 PASPTKKEKTPEKSAAEELKSPTKKEKSPSSPTKKTGDESKEKSPEKPEEKP 1856

The following BLAST results are available for this feature:
BLAST of MELO3C020300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
UNC89_CAEEL6.4e-0627.17Muscle M-line assembly protein unc-89 OS=Caenorhabditis elegans GN=unc-89 PE=1 S... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU51813melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020300T1MELO3C020300T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU51813MU51813transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C020300Cucurbita pepo (Zucchini)cpemeB529
MELO3C020300Cucurbita pepo (Zucchini)cpemeB586
MELO3C020300Bottle gourd (USVL1VR-Ls)lsimeB368
MELO3C020300Cucumber (Gy14) v2cgybmeB212
MELO3C020300Silver-seed gourdcarmeB0181
MELO3C020300Silver-seed gourdcarmeB0756
MELO3C020300Cucumber (Chinese Long) v3cucmeB247
MELO3C020300Cucumber (Chinese Long) v3cucmeB249
MELO3C020300Watermelon (97103) v2mewmbB434
MELO3C020300Wax gourdmewgoB530
MELO3C020300Cucumber (Gy14) v1cgymeB144
MELO3C020300Cucumber (Gy14) v1cgymeB343
MELO3C020300Cucurbita maxima (Rimu)cmameB243
MELO3C020300Cucurbita maxima (Rimu)cmameB431
MELO3C020300Cucurbita moschata (Rifu)cmomeB231
MELO3C020300Cucurbita moschata (Rifu)cmomeB421
MELO3C020300Wild cucumber (PI 183967)cpimeB241
MELO3C020300Cucumber (Chinese Long) v2cumeB251
MELO3C020300Watermelon (Charleston Gray)mewcgB427
MELO3C020300Watermelon (97103) v1mewmB461