MELO3C020290.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020290.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Little protein 1
Location	chr06 : 14818041 .. 14818274 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTCGGAGTCGGCGTTCCGATCTGCATCGAATGTGGGACCCACAGCAATCCGTGCAGATGCAAGGTGGTGGGGCCGACCCTGGGGTTTTTGGCTTTCGCTGTGGCGGCGGTGGTGGAGTGGCCGGTGGGAGCTCTGGTTTTTTGCTTCCGCCACCACAAGGGCCGCCGTATCATGGCGCATCCGGCTACCGTCGTATACCCGTCGGTGTCTAATGCGATTCCGATTTGA

mRNA sequence

ATGGCTGTCGGAGTCGGCGTTCCGATCTGCATCGAATGTGGGACCCACAGCAATCCGTGCAGATGCAAGGTGGTGGGGCCGACCCTGGGGTTTTTGGCTTTCGCTGTGGCGGCGGTGGTGGAGTGGCCGGTGGGAGCTCTGGTTTTTTGCTTCCGCCACCACAAGGGCCGCCGTATCATGGCGCATCCGGCTACCGTCGTATACCCGTCGGTGTCTAATGCGATTCCGATTTGA

Coding sequence (CDS)

ATGGCTGTCGGAGTCGGCGTTCCGATCTGCATCGAATGTGGGACCCACAGCAATCCGTGCAGATGCAAGGTGGTGGGGCCGACCCTGGGGTTTTTGGCTTTCGCTGTGGCGGCGGTGGTGGAGTGGCCGGTGGGAGCTCTGGTTTTTTGCTTCCGCCACCACAAGGGCCGCCGTATCATGGCGCATCCGGCTACCGTCGTATACCCGTCGGTGTCTAATGCGATTCCGATTTGA

Protein sequence

MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAHPATVVYPSVSNAIPI

Homology

[Close]

BLAST of MELO3C020290.2 vs. NCBI nr
Match: XP_008457074.1 (PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo])

HSP 1 Score: 165.2 bits (417), Expect = 8.6e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM
Sbjct: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVYPSVSNAIPI 78
          AHPATVVYPSVSNAIPI
Sbjct: 61 AHPATVVYPSVSNAIPI 77

[Close]

BLAST of MELO3C020290.2 vs. NCBI nr
Match: XP_004150937.1 (PREDICTED: uncharacterized protein LOC101215398 [Cucumis sativus] >KGN57844.1 hypothetical protein Csa_3G346910 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 4.2e-37
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          M VG+GVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVYPSVSNAIPI 78
          AHPATVVYPSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of MELO3C020290.2 vs. NCBI nr
Match: XP_023528466.1 (uncharacterized protein LOC111791385 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 159.5 bits (402), Expect = 4.7e-36
Identity = 71/77 (92.21%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          MAVG+GVPIC+ECGTH NPCRCKVVGPTLGFLAFAVAAVVEWPVGALV+CFRHHKGRRIM
Sbjct: 1  MAVGIGVPICVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60

Query: 61 AHPATVVYPSVSNAIPI 78
          AHP TVVYPSVSNA+PI
Sbjct: 61 AHPVTVVYPSVSNAVPI 77

[Close]

BLAST of MELO3C020290.2 vs. NCBI nr
Match: XP_022935253.1 (uncharacterized protein LOC111442190 [Cucurbita moschata])

HSP 1 Score: 159.1 bits (401), Expect = 6.1e-36
Identity = 70/77 (90.91%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          MAVG+GVP+C+ECGTH NPCRCKVVGPTLGFLAFAVAAVVEWPVGALV+CFRHHKGRRIM
Sbjct: 1  MAVGIGVPVCVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60

Query: 61 AHPATVVYPSVSNAIPI 78
          AHP TVVYPSVSNA+PI
Sbjct: 61 AHPVTVVYPSVSNAVPI 77

[Close]

BLAST of MELO3C020290.2 vs. NCBI nr
Match: XP_022143411.1 (uncharacterized protein LOC111013291 [Momordica charantia])

HSP 1 Score: 157.9 bits (398), Expect = 1.4e-35
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          MAVG+GVPICIECGTHSNPCRCKVVGPTLGFLAFA AAVVEWPVGALV+CFRH KGRRIM
Sbjct: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAAAAVVEWPVGALVYCFRHAKGRRIM 60

Query: 61 AHPATVVYPSVSNAIPI 78
          AHPATVVYPSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of MELO3C020290.2 vs. TAIR10
Match: AT3G03341.1 (unknown protein)

HSP 1 Score: 119.0 bits (297), Expect = 1.3e-27
Identity = 51/71 (71.83%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 7  VPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAHPATV 66
          +PIC++CGT  NPCRCKVVGPTLG +AF  A +VEWPVGALV+ F+H KGRRIM HPAT 
Sbjct: 2  IPICVQCGTGGNPCRCKVVGPTLGLVAFVAAGIVEWPVGALVYIFKHAKGRRIMGHPATH 61

Query: 67 VYPSVSNAIPI 78
          VYP VS +IPI
Sbjct: 62 VYPKVSRSIPI 72

[Close]

BLAST of MELO3C020290.2 vs. TrEMBL
Match: tr|A0A1S3C5C8|A0A1S3C5C8_CUCME (uncharacterized protein LOC103496842 OS=Cucumis melo OX=3656 GN=LOC103496842 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 5.7e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM
Sbjct: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVYPSVSNAIPI 78
          AHPATVVYPSVSNAIPI
Sbjct: 61 AHPATVVYPSVSNAIPI 77

[Close]

BLAST of MELO3C020290.2 vs. TrEMBL
Match: tr|A0A0A0LA45|A0A0A0LA45_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346910 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.8e-37
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          M VG+GVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVYPSVSNAIPI 78
          AHPATVVYPSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of MELO3C020290.2 vs. TrEMBL
Match: tr|A0A218XJX3|A0A218XJX3_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr027786 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.2e-33
Identity = 68/77 (88.31%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          MA+GVGVPIC+ECGT SNPCRCKVVGPTLGFLAF  AAVVEWP+GALV+CFRH KGRRIM
Sbjct: 1  MALGVGVPICVECGTTSNPCRCKVVGPTLGFLAFTAAAVVEWPLGALVYCFRHMKGRRIM 60

Query: 61 AHPATVVYPSVSNAIPI 78
          AHPATVVYPSV+NAIPI
Sbjct: 61 AHPATVVYPSVTNAIPI 77

[Close]

BLAST of MELO3C020290.2 vs. TrEMBL
Match: tr|A0A2N9J3H0|A0A2N9J3H0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58942 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.2e-33
Identity = 66/77 (85.71%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          M  G+G+P+C++CGT SNPCRCKVVGPTLGFLAFAVAA+VEWPVGALV+CFRH KGRRIM
Sbjct: 1  MTGGIGIPVCVQCGTPSNPCRCKVVGPTLGFLAFAVAAIVEWPVGALVYCFRHMKGRRIM 60

Query: 61 AHPATVVYPSVSNAIPI 78
          AHPATVVYPSVSNAIPI
Sbjct: 61 AHPATVVYPSVSNAIPI 77

[Close]

BLAST of MELO3C020290.2 vs. TrEMBL
Match: tr|A0A059BUM2|A0A059BUM2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F02822 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 9.4e-33
Identity = 66/77 (85.71%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          MA+G+G+PIC++CGT SNPCRCKVVGPT+GFLAFA AAVVEWPVGALV+CFRH KGRRIM
Sbjct: 1  MALGIGIPICVQCGTTSNPCRCKVVGPTVGFLAFAAAAVVEWPVGALVYCFRHGKGRRIM 60

Query: 61 AHPATVVYPSVSNAIPI 78
          AHPATVVYPSV NAIPI
Sbjct: 61 AHPATVVYPSVINAIPI 77

The following BLAST results are available for this feature:

BLAST of MELO3C020290.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457074.1	8.6e-38	100.00	PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo]	[more]
XP_004150937.1	4.2e-37	96.10	PREDICTED: uncharacterized protein LOC101215398 [Cucumis sativus] >KGN57844.1 hy...	[more]
XP_023528466.1	4.7e-36	92.21	uncharacterized protein LOC111791385 [Cucurbita pepo subsp. pepo]	[more]
XP_022935253.1	6.1e-36	90.91	uncharacterized protein LOC111442190 [Cucurbita moschata]	[more]
XP_022143411.1	1.4e-35	93.51	uncharacterized protein LOC111013291 [Momordica charantia]	[more]

BLAST of MELO3C020290.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03341.1	1.3e-27	71.83	unknown protein	[more]

BLAST of MELO3C020290.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C020290.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C5C8\|A0A1S3C5C8_CUCME	5.7e-38	100.00	uncharacterized protein LOC103496842 OS=Cucumis melo OX=3656 GN=LOC103496842 PE=...	[more]
tr\|A0A0A0LA45\|A0A0A0LA45_CUCSA	2.8e-37	96.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346910 PE=4 SV=1	[more]
tr\|A0A218XJX3\|A0A218XJX3_PUNGR	3.2e-33	88.31	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr027786 PE=4 SV=1	[more]
tr\|A0A2N9J3H0\|A0A2N9J3H0_FAGSY	4.2e-33	85.71	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58942 PE=4 SV=1	[more]
tr\|A0A059BUM2\|A0A059BUM2_EUCGR	9.4e-33	85.71	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F02822 PE=4 SV...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020290.2.1	MELO3C020290.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34673	FAMILY NOT NAMED	coord: 1..77

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020290.2	Cucumber (Chinese Long) v3	cucmedB247
MELO3C020290.2	Watermelon (97103) v2	medwmbB424
MELO3C020290.2	Wax gourd	medwgoB531
MELO3C020290.2	Cucumber (Gy14) v2	cgybmedB216
MELO3C020290.2	Cucumber (Gy14) v1	cgymedB338
MELO3C020290.2	Cucurbita maxima (Rimu)	cmamedB274
MELO3C020290.2	Cucurbita maxima (Rimu)	cmamedB496
MELO3C020290.2	Cucurbita moschata (Rifu)	cmomedB261
MELO3C020290.2	Cucurbita moschata (Rifu)	cmomedB483
MELO3C020290.2	Cucurbita pepo (Zucchini)	cpemedB630
MELO3C020290.2	Cucurbita pepo (Zucchini)	cpemedB694
MELO3C020290.2	Wild cucumber (PI 183967)	cpimedB240
MELO3C020290.2	Cucumber (Chinese Long) v2	cumedB239
MELO3C020290.2	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C020290.2	Watermelon (Charleston Gray)	medwcgB417
MELO3C020290.2	Watermelon (97103) v1	medwmB448
MELO3C020290.2	Silver-seed gourd	carmedB0185
MELO3C020290.2	Silver-seed gourd	carmedB0771