MELO3C020287 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020287
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Transcription initiation factor TFIID subunit 1-A
Location	chr6 : 13755025 .. 13755258 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCTAGAACTGCTTTGCAAGCTGAATTACTTAGCAGACATGTTTTTCTGATGGAGTATTGTGAAGAAAGGCCTTTACTTTCGGGCAACATTGGAAAGGAGGCAAGGCTGTGCACTTATTATCAAGGCTGTGCACTTACTTTCTGGTGTGATGTTGCGGAATGGGGGGATAATTTAGGACATGTCGTTTTCCTTGAACCTTCAGATAAATCGCCTTTTCTTAGGAATTAA

mRNA sequence

ATGGGTTCTAGAACTGCTTTGCAAGCTGAATTACTTAGCAGACATGTTTTTCTGATGGAGTATTGTGAAGAAAGGCCTTTACTTTCGGGCAACATTGGAAAGGAGGCAAGGCTGTGCACTTATTATCAAGGCTGTGCACTTACTTTCTGGTGTGATGTTGCGGAATGGGGGGATAATTTAGGACATGTCGTTTTCCTTGAACCTTCAGATAAATCGCCTTTTCTTAGGAATTAA

Coding sequence (CDS)

ATGGGTTCTAGAACTGCTTTGCAAGCTGAATTACTTAGCAGACATGTTTTTCTGATGGAGTATTGTGAAGAAAGGCCTTTACTTTCGGGCAACATTGGAAAGGAGGCAAGGCTGTGCACTTATTATCAAGGCTGTGCACTTACTTTCTGGTGTGATGTTGCGGAATGGGGGGATAATTTAGGACATGTCGTTTTCCTTGAACCTTCAGATAAATCGCCTTTTCTTAGGAATTAA

Protein sequence

MGSRTALQAELLSRHVFLMEYCEERPLLSGNIGKEARLCTYYQGCALTFWCDVAEWGDNLGHVVFLEPSDKSPFLRN*

Homology

[Close]

BLAST of MELO3C020287 vs. Swiss-Prot
Match: TAF1_ORYSJ (Transcription initiation factor TFIID subunit 1 OS=Oryza sativa subsp. japonica GN=TAF1 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.6e-11
Identity = 35/65 (53.85%), Postives = 41/65 (63.08%), Query Frame = 1


Query: 15  HVFLMEYCEERPLLSGNIGKEARLCTYYQGCALT--FWCDVAEWGDNLGHVVFLEPSDKS 74
           HVFLMEYCEERPLL  N G  ARLCTYYQ  + +      +    D LG ++ ++P+DKS
Sbjct: 744 HVFLMEYCEERPLLLANAGMAARLCTYYQKTSPSDQTATSLRSNSDGLGTMLAIDPADKS 803

Query: 75  PFLRN 78
           PFL N
Sbjct: 804 PFLGN 808

[Close]

BLAST of MELO3C020287 vs. Swiss-Prot
Match: TAF1_ARATH (Transcription initiation factor TFIID subunit 1 OS=Arabidopsis thaliana GN=TAF1 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.9e-11
Identity = 35/63 (55.56%), Postives = 38/63 (60.32%), Query Frame = 1


Query: 15  HVFLMEYCEERPLLSGNIGKEARLCTYYQGCALTFWCD--VAEWGDNLGHVVFLEPSDKS 74
           HVFLMEYCEERPL+  N G  A LCTYYQ  +        +    D LG+V+ LEP DKS
Sbjct: 769 HVFLMEYCEERPLMLSNAGMGANLCTYYQKSSPEDQRGNLLRNQSDTLGNVMILEPGDKS 828

Query: 75  PFL 76
           PFL
Sbjct: 829 PFL 831

[Close]

BLAST of MELO3C020287 vs. Swiss-Prot
Match: TAF1B_ARATH (Transcription initiation factor TFIID subunit 1b OS=Arabidopsis thaliana GN=TAF1B PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.3e-09
Identity = 33/63 (52.38%), Postives = 36/63 (57.14%), Query Frame = 1


Query: 15  HVFLMEYCEERPLLSGNIGKEARLCTYYQGCALTFWCD--VAEWGDNLGHVVFLEPSDKS 74
           HVFLMEYCEERPL+  N G  A LCTYYQ  +        +    D LG V+ LE  +KS
Sbjct: 682 HVFLMEYCEERPLMLSNAGMGANLCTYYQKSSPEDQHGNLLRNQSDTLGSVIILEHGNKS 741

Query: 75  PFL 76
           PFL
Sbjct: 742 PFL 744

[Close]

BLAST of MELO3C020287 vs. TrEMBL
Match: A0A0A0KA05_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G357030 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.8e-12
Identity = 40/62 (64.52%), Postives = 45/62 (72.58%), Query Frame = 1


Query: 16  VFLMEYCEERPLLSGNIGKEARLCTYYQGCALTFWCD--VAEWGDNLGHVVFLEPSDKSP 75
           VFLMEYCEERPLL GNIG  ARLCTYYQ  +        +   GD+LGHV+ LEPSDKSP
Sbjct: 777 VFLMEYCEERPLLLGNIGMGARLCTYYQKSSPDDQTGALLRNGGDSLGHVIILEPSDKSP 836

[Close]

BLAST of MELO3C020287 vs. TrEMBL
Match: A0A0S3T4H4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G127100 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.5e-11
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 1


Query: 15  HVFLMEYCEERPLLSGNIGKEARLCTYYQGCALTFWCD--VAEWGDNLGHVVFLEPSDKS 74
           HVFLMEYCEERPLL  N+G  ARLCTYYQ C+        +     +LGHV+ L+P+DKS
Sbjct: 776 HVFLMEYCEERPLLLSNVGMGARLCTYYQKCSPDDQSGSLLRNTDSSLGHVISLDPADKS 835

Query: 75  PFL 76
           PFL
Sbjct: 836 PFL 838

[Close]

BLAST of MELO3C020287 vs. TrEMBL
Match: A0A0L9US62_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan06g073300 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.5e-11
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 1


Query: 15  HVFLMEYCEERPLLSGNIGKEARLCTYYQGCALTFWCD--VAEWGDNLGHVVFLEPSDKS 74
           HVFLMEYCEERPLL  N+G  ARLCTYYQ C+        +     +LGHV+ L+P+DKS
Sbjct: 815 HVFLMEYCEERPLLLSNVGMGARLCTYYQKCSPDDQSGSLLRNTDSSLGHVISLDPADKS 874

Query: 75  PFL 76
           PFL
Sbjct: 875 PFL 877

[Close]

BLAST of MELO3C020287 vs. TrEMBL
Match: V7CJ31_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G127400g PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.2e-11
Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = 1


Query: 15  HVFLMEYCEERPLLSGNIGKEARLCTYYQGCALTFWCD--VAEWGDNLGHVVFLEPSDKS 74
           HVFLMEYCEERPLL  N+G  ARLCTYYQ C+        +     +LGH++ L+P+DKS
Sbjct: 776 HVFLMEYCEERPLLLSNVGMGARLCTYYQKCSPDDQSGSLLRNTDSSLGHIISLDPADKS 835

Query: 75  PFL 76
           PFL
Sbjct: 836 PFL 838

[Close]

BLAST of MELO3C020287 vs. TrEMBL
Match: A0A151QTD8_CAJCA (Transcription initiation factor TFIID subunit 1-A OS=Cajanus cajan GN=KK1_045606 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.2e-11
Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = 1


Query: 15  HVFLMEYCEERPLLSGNIGKEARLCTYYQGCALTFWCD--VAEWGDNLGHVVFLEPSDKS 74
           HVFLMEYCEERPLL  N+G  ARLCTYYQ C+        +     +LGH++ L+P+DKS
Sbjct: 675 HVFLMEYCEERPLLLSNVGMGARLCTYYQKCSPDDQSGSLLRNTDISLGHIISLDPADKS 734

Query: 75  PFL 76
           PFL
Sbjct: 735 PFL 737

[Close]

BLAST of MELO3C020287 vs. TAIR10
Match: AT1G32750.1 (AT1G32750.1 HAC13 protein (HAC13))

HSP 1 Score: 67.4 bits (163), Expect = 4.5e-12
Identity = 35/63 (55.56%), Postives = 38/63 (60.32%), Query Frame = 1


Query: 15  HVFLMEYCEERPLLSGNIGKEARLCTYYQGCALTFWCD--VAEWGDNLGHVVFLEPSDKS 74
           HVFLMEYCEERPL+  N G  A LCTYYQ  +        +    D LG+V+ LEP DKS
Sbjct: 769 HVFLMEYCEERPLMLSNAGMGANLCTYYQKSSPEDQRGNLLRNQSDTLGNVMILEPGDKS 828

Query: 75  PFL 76
           PFL
Sbjct: 829 PFL 831

[Close]

BLAST of MELO3C020287 vs. TAIR10
Match: AT3G19040.1 (AT3G19040.1 histone acetyltransferase of the TAFII250 family 2)

HSP 1 Score: 62.0 bits (149), Expect = 1.9e-10
Identity = 33/63 (52.38%), Postives = 36/63 (57.14%), Query Frame = 1


Query: 15  HVFLMEYCEERPLLSGNIGKEARLCTYYQGCALTFWCD--VAEWGDNLGHVVFLEPSDKS 74
           HVFLMEYCEERPL+  N G  A LCTYYQ  +        +    D LG V+ LE  +KS
Sbjct: 682 HVFLMEYCEERPLMLSNAGMGANLCTYYQKSSPEDQHGNLLRNQSDTLGSVIILEHGNKS 741

Query: 75  PFL 76
           PFL
Sbjct: 742 PFL 744

[Close]

BLAST of MELO3C020287 vs. NCBI nr
Match: gi|659116422|ref|XP_008458065.1| (PREDICTED: transcription initiation factor TFIID subunit 1 isoform X1 [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 3.2e-12
Identity = 40/63 (63.49%), Postives = 45/63 (71.43%), Query Frame = 1


Query: 15  HVFLMEYCEERPLLSGNIGKEARLCTYYQGCALTFWCD--VAEWGDNLGHVVFLEPSDKS 74
           HVFLMEYCEERPLL  NIG  ARLCTYYQ  +        +   GD+LGHV+ LEPSDKS
Sbjct: 779 HVFLMEYCEERPLLLSNIGMGARLCTYYQKSSPDDQTGTLLRNGGDSLGHVIILEPSDKS 838

Query: 75  PFL 76
           P+L
Sbjct: 839 PYL 841

[Close]

BLAST of MELO3C020287 vs. NCBI nr
Match: gi|659116430|ref|XP_008458069.1| (PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 3.2e-12
Identity = 40/63 (63.49%), Postives = 45/63 (71.43%), Query Frame = 1


Query: 15  HVFLMEYCEERPLLSGNIGKEARLCTYYQGCALTFWCD--VAEWGDNLGHVVFLEPSDKS 74
           HVFLMEYCEERPLL  NIG  ARLCTYYQ  +        +   GD+LGHV+ LEPSDKS
Sbjct: 611 HVFLMEYCEERPLLLSNIGMGARLCTYYQKSSPDDQTGTLLRNGGDSLGHVIILEPSDKS 670

Query: 75  PFL 76
           P+L
Sbjct: 671 PYL 673

[Close]

BLAST of MELO3C020287 vs. NCBI nr
Match: gi|778727071|ref|XP_011659205.1| (PREDICTED: transcription initiation factor TFIID subunit 1 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 5.5e-12
Identity = 40/62 (64.52%), Postives = 45/62 (72.58%), Query Frame = 1


Query: 16  VFLMEYCEERPLLSGNIGKEARLCTYYQGCALTFWCD--VAEWGDNLGHVVFLEPSDKSP 75
           VFLMEYCEERPLL GNIG  ARLCTYYQ  +        +   GD+LGHV+ LEPSDKSP
Sbjct: 777 VFLMEYCEERPLLLGNIGMGARLCTYYQKSSPDDQTGALLRNGGDSLGHVIILEPSDKSP 836

[Close]

BLAST of MELO3C020287 vs. NCBI nr
Match: gi|1012124074|ref|XP_015963169.1| (PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 1-like [Arachis duranensis])

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-11
Identity = 37/63 (58.73%), Postives = 45/63 (71.43%), Query Frame = 1


Query: 15  HVFLMEYCEERPLLSGNIGKEARLCTYYQGCALTFWCD--VAEWGDNLGHVVFLEPSDKS 74
           HVFLMEYCEERPLL GN G  ARLCTYYQ C+        +    ++LGH++ L+P+DKS
Sbjct: 728 HVFLMEYCEERPLLLGNAGMGARLCTYYQKCSPDDQSGSLLRNTDNSLGHIISLDPADKS 787

Query: 75  PFL 76
           PFL
Sbjct: 788 PFL 790

[Close]

BLAST of MELO3C020287 vs. NCBI nr
Match: gi|1021515583|ref|XP_016201251.1| (PREDICTED: transcription initiation factor TFIID subunit 1 isoform X1 [Arachis ipaensis])

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-11
Identity = 37/63 (58.73%), Postives = 45/63 (71.43%), Query Frame = 1


Query: 15  HVFLMEYCEERPLLSGNIGKEARLCTYYQGCALTFWCD--VAEWGDNLGHVVFLEPSDKS 74
           HVFLMEYCEERPLL GN G  ARLCTYYQ C+        +    ++LGH++ L+P+DKS
Sbjct: 772 HVFLMEYCEERPLLLGNAGMGARLCTYYQKCSPDDQSGSLLRNTDNSLGHIISLDPADKS 831

Query: 75  PFL 76
           PFL
Sbjct: 832 PFL 834

The following BLAST results are available for this feature:

BLAST of MELO3C020287 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TAF1_ORYSJ	3.6e-11	53.85	Transcription initiation factor TFIID subunit 1 OS=Oryza sativa subsp. japonica ...	[more]
TAF1_ARATH	7.9e-11	55.56	Transcription initiation factor TFIID subunit 1 OS=Arabidopsis thaliana GN=TAF1 ...	[more]
TAF1B_ARATH	3.3e-09	52.38	Transcription initiation factor TFIID subunit 1b OS=Arabidopsis thaliana GN=TAF1...	[more]

BLAST of MELO3C020287 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KA05_CUCSA	3.8e-12	64.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G357030 PE=4 SV=1	[more]
A0A0S3T4H4_PHAAN	2.5e-11	58.73	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G127100 PE=...	[more]
A0A0L9US62_PHAAN	2.5e-11	58.73	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan06g073300 PE=4 SV=1	[more]
V7CJ31_PHAVU	3.2e-11	57.14	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G127400g PE=4 SV=1	[more]
A0A151QTD8_CAJCA	7.2e-11	57.14	Transcription initiation factor TFIID subunit 1-A OS=Cajanus cajan GN=KK1_045606...	[more]

BLAST of MELO3C020287 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G32750.1	4.5e-12	55.56	HAC13 protein (HAC13)	[more]
AT3G19040.1	1.9e-10	52.38	histone acetyltransferase of the TAFII250 family 2	[more]

BLAST of MELO3C020287 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659116422\|ref\|XP_008458065.1\|	3.2e-12	63.49	PREDICTED: transcription initiation factor TFIID subunit 1 isoform X1 [Cucumis m...	[more]
gi\|659116430\|ref\|XP_008458069.1\|	3.2e-12	63.49	PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Cucumis m...	[more]
gi\|778727071\|ref\|XP_011659205.1\|	5.5e-12	64.52	PREDICTED: transcription initiation factor TFIID subunit 1 [Cucumis sativus]	[more]
gi\|1012124074\|ref\|XP_015963169.1\|	2.1e-11	58.73	PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 1-...	[more]
gi\|1021515583\|ref\|XP_016201251.1\|	2.1e-11	58.73	PREDICTED: transcription initiation factor TFIID subunit 1 isoform X1 [Arachis i...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR022591	TFIID_sub1_DUF3591

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020287T1	MELO3C020287T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022591	Transcription initiation factor TFIID subunit 1, domain of unknown function	PFAM	PF12157	DUF3591	coord: 14..75 score: 2.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020287	Silver-seed gourd	carmeB0181
MELO3C020287	Silver-seed gourd	carmeB0756
MELO3C020287	Cucumber (Chinese Long) v3	cucmeB249
MELO3C020287	Watermelon (97103) v2	mewmbB434
MELO3C020287	Wax gourd	mewgoB530
MELO3C020287	Cucumber (Gy14) v1	cgymeB343
MELO3C020287	Cucurbita maxima (Rimu)	cmameB243
MELO3C020287	Cucurbita maxima (Rimu)	cmameB431
MELO3C020287	Cucurbita moschata (Rifu)	cmomeB231
MELO3C020287	Cucurbita moschata (Rifu)	cmomeB421
MELO3C020287	Wild cucumber (PI 183967)	cpimeB241
MELO3C020287	Wild cucumber (PI 183967)	cpimeB243
MELO3C020287	Cucumber (Chinese Long) v2	cumeB246
MELO3C020287	Watermelon (Charleston Gray)	mewcgB427
MELO3C020287	Watermelon (97103) v1	mewmB461
MELO3C020287	Cucurbita pepo (Zucchini)	cpemeB529
MELO3C020287	Cucurbita pepo (Zucchini)	cpemeB586
MELO3C020287	Bottle gourd (USVL1VR-Ls)	lsimeB368
MELO3C020287	Cucumber (Gy14) v2	cgybmeB212