MELO3C020286 (gene) Melon (DHL92) v3.5.1

NameMELO3C020286
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Locationchr6 : 13759402 .. 13759848 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATTGAAGAGCCATGTGAAGGGAAAGGAAGTGATTGTGCTGATTGACAGCGGAGCAACACACAACTTCATTCACCAAGCTTTAGTAGAGGAAAAGCAGTTACCATGGGAGAAAAATACTCAATTTGGTGTTACCATTGGGGATGGCACGAGACGCAAGGGAAAAGGGATTTGTAGACGAGTTGAACTCAAGCTGAAGGAACTGACAGTGGAGGCTGATTTCCTAGCAGTAGAATTGGGAAAGGTAGATGTTGTCCTGGGGATGCAATGGCTGGACACGAAAGGTACGATGAAGGTGCATTGGCCAACATTAACAATGGTGTATTGGATAGGAGAGAAAAAAGTAATACTCAAGGGAGATCTATGTCTCATTAGAGCGGAATGCTCCTTGAAAACAATAGAGAAAACATGGAAAGTGGAAGATCAAGGGTTTCTAATTGAATGA

mRNA sequence

ATGAAATTGAAGAGCCATGTGAAGGGAAAGGAAGTGATTGTGCTGATTGACAGCGGAGCAACACACAACTTCATTCACCAAGCTTTAGTAGAGGAAAAGCAGTTACCATGGGAGAAAAATACTCAATTTGGTGTTACCATTGGGGATGGCACGAGACGCAAGGGAAAAGGGATTTGTAGACGAGTTGAACTCAAGCTGAAGGAACTGACAGTGGAGGCTGATTTCCTAGCAGTAGAATTGGGAAAGGTAGATGTTGTCCTGGGGATGCAATGGCTGGACACGAAAGGTACGATGAAGGTGCATTGGCCAACATTAACAATGGTGTATTGGATAGGAGAGAAAAAAGTAATACTCAAGGGAGATCTATGTCTCATTAGAGCGGAATGCTCCTTGAAAACAATAGAGAAAACATGGAAAGTGGAAGATCAAGGGTTTCTAATTGAATGA

Coding sequence (CDS)

ATGAAATTGAAGAGCCATGTGAAGGGAAAGGAAGTGATTGTGCTGATTGACAGCGGAGCAACACACAACTTCATTCACCAAGCTTTAGTAGAGGAAAAGCAGTTACCATGGGAGAAAAATACTCAATTTGGTGTTACCATTGGGGATGGCACGAGACGCAAGGGAAAAGGGATTTGTAGACGAGTTGAACTCAAGCTGAAGGAACTGACAGTGGAGGCTGATTTCCTAGCAGTAGAATTGGGAAAGGTAGATGTTGTCCTGGGGATGCAATGGCTGGACACGAAAGGTACGATGAAGGTGCATTGGCCAACATTAACAATGGTGTATTGGATAGGAGAGAAAAAAGTAATACTCAAGGGAGATCTATGTCTCATTAGAGCGGAATGCTCCTTGAAAACAATAGAGAAAACATGGAAAGTGGAAGATCAAGGGTTTCTAATTGAATGA

Protein sequence

MKLKSHVKGKEVIVLIDSGATHNFIHQALVEEKQLPWEKNTQFGVTIGDGTRRKGKGICRRVELKLKELTVEADFLAVELGKVDVVLGMQWLDTKGTMKVHWPTLTMVYWIGEKKVILKGDLCLIRAECSLKTIEKTWKVEDQGFLIE*
BLAST of MELO3C020286 vs. TrEMBL
Match: E5GC18_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 6.4e-32
Identity = 73/145 (50.34%), Postives = 97/145 (66.90%), Query Frame = 1

Query: 2   KLKSHVKGKEVIVLIDSGATHNFIHQALVEEKQLPWEKNTQFGVTIGDGTRRKGKGICRR 61
           K+K  V+ +EV+V+ID GATHNFI   LVEE Q+   + TQ+GV +G G   +GKG+C  
Sbjct: 371 KIKGKVEDREVVVMIDCGATHNFISLRLVEEMQIATTETTQYGVIMGSGKAVQGKGMCTG 430

Query: 62  VELKLKELTVEADFLAVELGKVDVVLGMQWLDTKGTMKVHWPTLTMVYWIGEKKVILKGD 121
           V + L  LTV  DFL +ELG +D+VLGMQWL  +G M V W  L M + + + KV+L+GD
Sbjct: 431 VVVGLPGLTVVEDFLPLELGHLDMVLGMQWLPKQGAMTVDWRNLAMTFAVRDVKVMLRGD 490

Query: 122 LCLIRAECSLKTIEKTWKVEDQGFL 147
           L L R   SLK + K W+ ED+GFL
Sbjct: 491 LSLTRMAISLKMLMKQWQPEDRGFL 515

BLAST of MELO3C020286 vs. TrEMBL
Match: A5CAG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018166 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.3e-29
Identity = 70/148 (47.30%), Postives = 94/148 (63.51%), Query Frame = 1

Query: 1   MKLKSHVKGKEVIVLIDSGATHNFIHQALVEEKQLPWEKNTQFGVTIGDGTRRKGKGICR 60
           MK+K  +  KEVI+L+DSGATHNF+   LV++  LP    T + V +G G   KGKGICR
Sbjct: 1   MKIKGMIGSKEVIILVDSGATHNFLSLELVQQLALPLTTTTSYEVMMGTGISVKGKGICR 60

Query: 61  RVELKLKELTVEADFLAVELGKVDVVLGMQWLDTKGTMKVHWPTLTMVYWIGEKKVILKG 120
            V + ++ LTV  DFL +ELG  DV+LGM WL T G +KV+W  LTM   +G+  ++LKG
Sbjct: 61  GVCISMQGLTVVEDFLPLELGNTDVILGMPWLGTLGDVKVNWKMLTMKIKMGKAVIVLKG 120

Query: 121 DLCLIRAECSLKTIEKTWKVEDQGFLIE 149
           D  L R E SLK + +  +   QG  +E
Sbjct: 121 DPSLSRIEVSLKAMTRALQHHSQGVWVE 148

BLAST of MELO3C020286 vs. TrEMBL
Match: F6GVT4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0083g00660 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.3e-28
Identity = 67/136 (49.26%), Postives = 90/136 (66.18%), Query Frame = 1

Query: 1   MKLKSHVKGKEVIVLIDSGATHNFIHQALVEEKQLPWEKNTQFGVTIGDGTRRKGKGICR 60
           MK+K  ++ KEVI+L+DSGATHNF+   LV++  LP    T +GV +G G   KGKGICR
Sbjct: 51  MKIKGTIRSKEVIILVDSGATHNFLSLELVQQLALPLTTITSYGVMMGIGISMKGKGICR 110

Query: 61  RVELKLKELTVEADFLAVELGKVDVVLGMQWLDTKGTMKVHWPTLTMVYWIGEKKVILKG 120
            V + ++ LTV  DFL +ELG  DV+LGM WL T G +KV+W  LTM   +G+  ++LK 
Sbjct: 111 GVCISMQGLTVVEDFLPLELGNTDVILGMPWLGTLGDVKVNWKMLTMKIKMGKAVIVLKR 170

Query: 121 DLCLIRAECSLKTIEK 137
           D  L R E SLK + +
Sbjct: 171 DPSLSRTEVSLKAMAR 186

BLAST of MELO3C020286 vs. TrEMBL
Match: A5B2I6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.6e-27
Identity = 66/130 (50.77%), Postives = 86/130 (66.15%), Query Frame = 1

Query: 1    MKLKSHVKGKEVIVLIDSGATHNFIHQALVEEKQLPWEKNTQFGVTIGDGTRRKGKGICR 60
            MK+K  +  KEVI+L+DSGATHNF+   LV++  LP    T +GV +G G   KGKGICR
Sbjct: 1059 MKIKGTIGSKEVIILVDSGATHNFLSLELVQQLTLPLTTTTSYGVMMGTGISVKGKGICR 1118

Query: 61   RVELKLKELTVEADFLAVELGKVDVVLGMQWLDTKGTMKVHWPTLTMVYWIGEKKVILKG 120
             V + ++ LTV  DFL +ELG  DV+LGM WL T G +KV+W  LTM   +G+  ++LKG
Sbjct: 1119 GVCISMQGLTVVEDFLPLELGNTDVILGMPWLGTLGDVKVNWKMLTMKIKMGKAVMVLKG 1178

Query: 121  DLCLIRAECS 131
            D  L R E S
Sbjct: 1179 DPSLSRTETS 1188

BLAST of MELO3C020286 vs. TrEMBL
Match: A0A087GW89_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA5G106200 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.3e-26
Identity = 64/148 (43.24%), Postives = 97/148 (65.54%), Query Frame = 1

Query: 1   MKLKSHVKGKEVIVLIDSGATHNFIHQALVEEKQLPWEKNTQFGVTIGDGTRRKGKGICR 60
           MKLK+ + G EV+V+IDSGA+HNFI + LV++  +  E++  +GV +G  T   G+GICR
Sbjct: 437 MKLKAKMLGTEVVVMIDSGASHNFISEPLVKKLSMKTEESHCYGVMMGTRTEVVGRGICR 496

Query: 61  RVELKLKELTVEADFLAVELGKVDVVLGMQWLDTKGTMKVHWPTLTMVYWIGEKKVILKG 120
            V L ++++TV  DFL +ELG  DV+LG+QWL+T G MKV+W      + +  +KV ++ 
Sbjct: 497 EVNLVMQDITVVTDFLPIELGGADVILGIQWLETLGEMKVNWKLQRAKFRVNGQKVTIQR 556

Query: 121 DLCLIRAECSLKTIEKTWKVEDQGFLIE 149
           D  L+ A  +LK + K    E QG ++E
Sbjct: 557 DPELVCAPITLKALWKAIGDESQGVIVE 584

BLAST of MELO3C020286 vs. TAIR10
Match: AT3G29750.1 (AT3G29750.1 Eukaryotic aspartyl protease family protein)

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-10
Identity = 36/104 (34.62%), Postives = 52/104 (50.00%), Query Frame = 1

Query: 1   MKLKSHVKGKEVIVLIDSGATHNFIHQALVEEKQLPWEKNTQFGVTIGDGTRRKGKGICR 60
           M+    +   +V+V IDSGAT NFI   L    +LP     Q  V +G     +  G C 
Sbjct: 124 MRFYGFILDHKVVVAIDSGATDNFILVELAFSLKLPTSITNQASVLLGQRQCIQSVGTCL 183

Query: 61  RVELKLKELTVEADFLAVELGK--VDVVLGMQWLDTKGTMKVHW 103
            + L ++E+ +  +FL ++L K  VDV+LG +WL   G   V+W
Sbjct: 184 GIRLWVQEVEITENFLLLDLAKTDVDVILGYEWLSKLGETMVNW 227

BLAST of MELO3C020286 vs. TAIR10
Match: AT3G30770.1 (AT3G30770.1 Eukaryotic aspartyl protease family protein)

HSP 1 Score: 52.4 bits (124), Expect = 2.8e-07
Identity = 31/90 (34.44%), Postives = 47/90 (52.22%), Query Frame = 1

Query: 1   MKLKSHVKGKEVIVLIDSGATHNFIHQALVEEKQLPWEKNTQFGVTIGDGTRRKGKGICR 60
           M+    +   +V+V+IDSGAT+NFI   L    +LP     Q  V +G     +  G C 
Sbjct: 284 MRFYGFISCHKVVVVIDSGATNNFISDELALVLKLPTSTTNQASVLLGQRQCIQTIGTCF 343

Query: 61  RVELKLKELTVEADFLAVELGK--VDVVLG 89
            + L ++E+ +  +FL ++L K  VDV+LG
Sbjct: 344 GINLLVQEVEINENFLLLDLTKTDVDVILG 373

BLAST of MELO3C020286 vs. NCBI nr
Match: gi|778697580|ref|XP_011654353.1| (PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus])

HSP 1 Score: 223.4 bits (568), Expect = 2.6e-55
Identity = 103/148 (69.59%), Postives = 127/148 (85.81%), Query Frame = 1

Query: 1   MKLKSHVKGKEVIVLIDSGATHNFIHQALVEEKQLPWEKNTQFGVTIGDGTRRKGKGICR 60
           MK+K  +KGKEV++LIDSGATHNFIH  +VEE  L  E +T FGVTIGDGTR +G+G+C 
Sbjct: 386 MKIKGEIKGKEVLILIDSGATHNFIHNKIVEEVGLELENHTPFGVTIGDGTRCQGRGVCN 445

Query: 61  RVELKLKELTVEADFLAVELGKVDVVLGMQWLDTKGTMKVHWPTLTMVYWIGEKKVILKG 120
           R+ELKLKE+T+ ADFLA+ELG VDV+LGMQWL+T GTMK+HWP+LTM + +G+K+ ILKG
Sbjct: 446 RLELKLKEITIVADFLAIELGSVDVILGMQWLNTTGTMKIHWPSLTMTFRMGKKQFILKG 505

Query: 121 DLCLIRAECSLKTIEKTWKVEDQGFLIE 149
           D  LIRAECSLKTIEKTW+ +DQGFL+E
Sbjct: 506 DPSLIRAECSLKTIEKTWEEDDQGFLLE 533

BLAST of MELO3C020286 vs. NCBI nr
Match: gi|659094491|ref|XP_008448087.1| (PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo])

HSP 1 Score: 219.5 bits (558), Expect = 3.8e-54
Identity = 101/148 (68.24%), Postives = 128/148 (86.49%), Query Frame = 1

Query: 1   MKLKSHVKGKEVIVLIDSGATHNFIHQALVEEKQLPWEKNTQFGVTIGDGTRRKGKGICR 60
           MK+K  ++ KE+++LIDSGATHNFIHQ+LV + +L  E++TQFG TIG+GTR KGKGICR
Sbjct: 329 MKIKGWIRQKEIVILIDSGATHNFIHQSLVVDLKLGMEQHTQFGYTIGNGTRCKGKGICR 388

Query: 61  RVELKLKELTVEADFLAVELGKVDVVLGMQWLDTKGTMKVHWPTLTMVYWIGEKKVILKG 120
           RVE+KL+E+T+ ADFLAVELG VD VL MQWLDT GTMK+HWP+LTM +W G +++ILKG
Sbjct: 389 RVEVKLEEITIIADFLAVELGSVDAVLEMQWLDTTGTMKIHWPSLTMSFWNGGRQIILKG 448

Query: 121 DLCLIRAECSLKTIEKTWKVEDQGFLIE 149
           D  LIRAECSL+T+EKTW+ +DQGFL+E
Sbjct: 449 DPSLIRAECSLRTLEKTWQEDDQGFLLE 476

BLAST of MELO3C020286 vs. NCBI nr
Match: gi|659077522|ref|XP_008439250.1| (PREDICTED: uncharacterized protein LOC103484090 [Cucumis melo])

HSP 1 Score: 217.2 bits (552), Expect = 1.9e-53
Identity = 100/148 (67.57%), Postives = 127/148 (85.81%), Query Frame = 1

Query: 1   MKLKSHVKGKEVIVLIDSGATHNFIHQALVEEKQLPWEKNTQFGVTIGDGTRRKGKGICR 60
           MKLK  ++ KE+++LIDSGATHNFIHQ+L  + +L  E++TQFG TIG+GTR KGKGICR
Sbjct: 160 MKLKGWIRQKEIVILIDSGATHNFIHQSLAVDLKLGLEQHTQFGYTIGNGTRCKGKGICR 219

Query: 61  RVELKLKELTVEADFLAVELGKVDVVLGMQWLDTKGTMKVHWPTLTMVYWIGEKKVILKG 120
           RVE+KL+E+T+ ADFLAVELG VD VLGMQWLDT GTMK+HWP+LTM +W   +++ILKG
Sbjct: 220 RVEVKLEEITIIADFLAVELGSVDAVLGMQWLDTTGTMKIHWPSLTMSFWNEGRQIILKG 279

Query: 121 DLCLIRAECSLKTIEKTWKVEDQGFLIE 149
           D  LI+AECSL+T+EKTW+ +DQGFL+E
Sbjct: 280 DPSLIKAECSLRTLEKTWQEDDQGFLLE 307

BLAST of MELO3C020286 vs. NCBI nr
Match: gi|778726094|ref|XP_011659055.1| (PREDICTED: uncharacterized protein LOC105436127 [Cucumis sativus])

HSP 1 Score: 213.8 bits (543), Expect = 2.1e-52
Identity = 102/147 (69.39%), Postives = 122/147 (82.99%), Query Frame = 1

Query: 1   MKLKSHVKGKEVIVLIDSGATHNFIHQALVEEKQLPWEKNTQFGVTIGDGTRRKGKGICR 60
           MKL   VKGK V VLIDSGATHNFIHQ L EE+ +  +++T FGVTIG+GT+ KGKG+C+
Sbjct: 121 MKLMGMVKGKAVTVLIDSGATHNFIHQTLAEERHILIDEDTSFGVTIGNGTKCKGKGVCK 180

Query: 61  RVELKLKELTVEADFLAVELGKVDVVLGMQWLDTKGTMKVHWPTLTMVYWIGEKKVILKG 120
           RVELKL  LT+ A FLAVELG VDVVLGMQWLDT GTMKVHWP+LTM + +GEK++ LKG
Sbjct: 181 RVELKLNTLTIVAGFLAVELGSVDVVLGMQWLDTTGTMKVHWPSLTMTFQVGEKQITLKG 240

Query: 121 DLCLIRAECSLKTIEKTWKVEDQGFLI 148
           D  LI+AECSLKT+ KTW+ +DQGFL+
Sbjct: 241 DPTLIKAECSLKTLGKTWEDDDQGFLL 267

BLAST of MELO3C020286 vs. NCBI nr
Match: gi|659109624|ref|XP_008454797.1| (PREDICTED: uncharacterized protein LOC103495115 [Cucumis melo])

HSP 1 Score: 208.0 bits (528), Expect = 1.1e-50
Identity = 98/148 (66.22%), Postives = 123/148 (83.11%), Query Frame = 1

Query: 1   MKLKSHVKGKEVIVLIDSGATHNFIHQALVEEKQLPWEKNTQFGVTIGDGTRRKGKGICR 60
           MKLK  V  K+++VLIDS AT+NFIHQ+L EE ++  E++T F VTIGDGTR KGKG CR
Sbjct: 160 MKLKGWVGDKKIVVLIDSEATYNFIHQSLAEELKMRLEQDTHFRVTIGDGTRCKGKGTCR 219

Query: 61  RVELKLKELTVEADFLAVELGKVDVVLGMQWLDTKGTMKVHWPTLTMVYWIGEKKVILKG 120
           RVELKLKE+T+ ADFLAVELG VD +LGMQWLD  GTM++HWP+LTM +W   ++++LKG
Sbjct: 220 RVELKLKEITIIADFLAVELGTVDAMLGMQWLDITGTMRIHWPSLTMTFWNEGRQIVLKG 279

Query: 121 DLCLIRAECSLKTIEKTWKVEDQGFLIE 149
           D  LI+AECSLKTIEKTW+ +D+GFL+E
Sbjct: 280 DPSLIKAECSLKTIEKTWEDDDRGFLLE 307

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GC18_CUCME6.4e-3250.34Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A5CAG1_VITVI2.3e-2947.30Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018166 PE=4 SV=1[more]
F6GVT4_VITVI3.3e-2849.26Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0083g00660 PE=4 SV=... [more]
A5B2I6_VITVI1.6e-2750.77Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1[more]
A0A087GW89_ARAAL2.3e-2643.24Uncharacterized protein OS=Arabis alpina GN=AALP_AA5G106200 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G29750.11.6e-1034.62 Eukaryotic aspartyl protease family protein[more]
AT3G30770.12.8e-0734.44 Eukaryotic aspartyl protease family protein[more]
Match NameE-valueIdentityDescription
gi|778697580|ref|XP_011654353.1|2.6e-5569.59PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus][more]
gi|659094491|ref|XP_008448087.1|3.8e-5468.24PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo][more]
gi|659077522|ref|XP_008439250.1|1.9e-5367.57PREDICTED: uncharacterized protein LOC103484090 [Cucumis melo][more]
gi|778726094|ref|XP_011659055.1|2.1e-5269.39PREDICTED: uncharacterized protein LOC105436127 [Cucumis sativus][more]
gi|659109624|ref|XP_008454797.1|1.1e-5066.22PREDICTED: uncharacterized protein LOC103495115 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013242Retroviral aspartyl protease
IPR021109Peptidase_aspartic_dom_sf
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020286T1MELO3C020286T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013242Retroviral aspartyl proteasePFAMPF08284RVP_2coord: 9..96
score: 1.0
IPR021109Aspartic peptidase domainunknownSSF50630Acid proteasescoord: 5..95
score: 4.8

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None