MELO3C020276.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C020276.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionTobamovirus multiplication 1
Locationchr06 : 15003060 .. 15004044 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATTCTTTGCAATCTTCCGTCTCTCGACCTCTCCAAATTTCCTTACAAGTCTCTCATTCGCACCGTTTTTTAATCATTTCTTCAAGAATGTTATGAACAATGCCTTGAAAACCAACTTGTGGATGCCTCTACAGCTACGAAGAAGGAGTACGACGACGATGGCGATCTCATTGTTTGCTGGGTTTGTGTGTTTTTTTTCTACCTCTTCTTCTTTCCAGTAGCTTGTGATTGTAATTTCCTTTTGCTATTATGTTTTTTATGAAATTTGAAAATTTGGTGTTATTTGGCTCAGTTATCAAGCAAGAGGAAGGTGACCAAAATAAATAAAAAGGCCGAAGTCTAAAAAACCCAAAGAAAAATCCCTTTTCTCCTCTGTCTCCTCTCTCTCCTCACCGACGTTGCGGTGGCTCTCTTGCCGGCATTCGCTTGTTCCTCTCAATTCATCAGATTCTCGGTTCTCTGATTCTACGACGGAGAGGGAGGGCGATAGTGGGAAAGATTCTTTACTATTTAGGGAAGAATGGGGAGATTGCAGCTGAACTTGACGACGACCATGGAGATGGGAGTTACGGAAACCAGCTGGTGGAATGACATCAACGAATCTACTTTTTGGCAGGATCGGATTTTCTACTCTCTTTGTGCTGTATATGCGCTAGTCTCCGCCGTTGCTTTGGTCTCTCTCTTTTGCTTCCGTACCCCATCCATCTAAACTTATCTGCTATGTGTGGTTATGGTTATGTATTTGATTGCTAATTGAGTAGATTGGTAGGTTTGGGTGTGTTTCCATTTCCTAAAATTGCTGCTTTTACTCATTGATGGGAGCCAATCGTTATGGTTTATTTAATCTGAATTTTGGGAAATGAAAATTTCATATTCCAACAGTACAATTTGTGTTTCCCATTATTTAATTCATTTACTTTCCGGGATTTGAATGCTTTACCCCAAGTTATCAAGGCTTCTTTAAGCTTTTGATGTCTAACTTTG

mRNA sequence

CAATTCTTTGCAATCTTCCGTCTCTCGACCTCTCCAAATTTCCTTACAAGTCTCTCATTCGCACCGTTTTTTAATCATTTCTTCAAGAATGTTATGAACAATGCCTTGAAAACCAACTTGTGGATGCCTCTACAGCTACGAAGAAGGAGTACGACGACGATGGCGATCTCATTGTTTGCTGGTTATCAAGCAAGAGGAAGGTGACCAAAATAAATAAAAAGGCCGAAGTCTAAAAAACCCAAAGAAAAATCCCTTTTCTCCTCTGTCTCCTCTCTCTCCTCACCGACGTTGCGGTGGCTCTCTTGCCGGCATTCGCTTGTTCCTCTCAATTCATCAGATTCTCGGTTCTCTGATTCTACGACGGAGAGGGAGGGCGATAGTGGGAAAGATTCTTTACTATTTAGGGAAGAATGGGGAGATTGCAGCTGAACTTGACGACGACCATGGAGATGGGAGTTACGGAAACCAGCTGGTGGAATGACATCAACGAATCTACTTTTTGGCAGGATCGGATTTTCTACTCTCTTTGTGCTGTATATGCGCTAGTCTCCGCCGTTGCTTTGGTCTCTCTCTTTTGCTTCCGTACCCCATCCATCTAAACTTATCTGCTATGTGTGGTTATGGTTATGTATTTGATTGCTAATTGAGTAGATTGGTAGGTTTGGGTGTGTTTCCATTTCCTAAAATTGCTGCTTTTACTCATTGATGGGAGCCAATCGTTATGGTTTATTTAATCTGAATTTTGGGAAATGAAAATTTCATATTCCAACAGTACAATTTGTGTTTCCCATTATTTAATTCATTTACTTTCCGGGATTTGAATGCTTTACCCCAAGTTATCAAGGCTTCTTTAAGCTTTTGATGTCTAACTTTG

Coding sequence (CDS)

ATGGGGAGATTGCAGCTGAACTTGACGACGACCATGGAGATGGGAGTTACGGAAACCAGCTGGTGGAATGACATCAACGAATCTACTTTTTGGCAGGATCGGATTTTCTACTCTCTTTGTGCTGTATATGCGCTAGTCTCCGCCGTTGCTTTGGTCTCTCTCTTTTGCTTCCGTACCCCATCCATCTAA

Protein sequence

MGRLQLNLTTTMEMGVTETSWWNDINESTFWQDRIFYSLCAVYALVSAVALVSLFCFRTPSI
Homology
[Close]
BLAST of MELO3C020276.2 vs. NCBI nr
Match: XP_008441185.1 (PREDICTED: tobamovirus multiplication protein 1 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 5.0e-20
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 0 

Query: 1  MGRLQLNLTTTMEMGVTETSWWNDINESTFWQDRIFYSLCAVYALVSAVALVSL 55
          MGRLQLNLTTTMEMGVT TSWWNDINESTFWQDRIFYSLCAVYALVSAVAL+ L
Sbjct: 1  MGRLQLNLTTTMEMGVTATSWWNDINESTFWQDRIFYSLCAVYALVSAVALIQL 54

[Close]
BLAST of MELO3C020276.2 vs. NCBI nr
Match: XP_004145105.1 (PREDICTED: tobamovirus multiplication protein 1 [Cucumis sativus] >KGN64534.1 hypothetical protein Csa_1G063580 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-18
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0 

Query: 1  MGRLQLNLTTTMEMGVTETSWWNDINESTFWQDRIFYSLCAVYALVSAVALVSL 55
          M RLQLNLTTTMEMGVT +SWWNDINESTFWQDRIFYSLCAVYALVSAVAL+ L
Sbjct: 1  MTRLQLNLTTTMEMGVTASSWWNDINESTFWQDRIFYSLCAVYALVSAVALIQL 54

[Close]
BLAST of MELO3C020276.2 vs. NCBI nr
Match: XP_022933215.1 (tobamovirus multiplication protein 1-like [Cucurbita moschata])

HSP 1 Score: 99.8 bits (247), Expect = 3.6e-18
Identity = 47/54 (87.04%), Postives = 50/54 (92.59%), Query Frame = 0 

Query: 1  MGRLQLNLTTTMEMGVTETSWWNDINESTFWQDRIFYSLCAVYALVSAVALVSL 55
          M RLQLNLTT MEMGVT +SWWNDINESTFWQDRIFYSLCA+YALVSAVAL+ L
Sbjct: 1  MARLQLNLTTAMEMGVTASSWWNDINESTFWQDRIFYSLCAIYALVSAVALIQL 54

[Close]
BLAST of MELO3C020276.2 vs. NCBI nr
Match: XP_023519001.1 (tobamovirus multiplication protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 99.8 bits (247), Expect = 3.6e-18
Identity = 47/54 (87.04%), Postives = 50/54 (92.59%), Query Frame = 0 

Query: 1  MGRLQLNLTTTMEMGVTETSWWNDINESTFWQDRIFYSLCAVYALVSAVALVSL 55
          M RLQLNLTT MEMGVT +SWWNDINESTFWQDRIFYSLCA+YALVSAVAL+ L
Sbjct: 1  MARLQLNLTTAMEMGVTASSWWNDINESTFWQDRIFYSLCAIYALVSAVALIQL 54

[Close]
BLAST of MELO3C020276.2 vs. NCBI nr
Match: XP_022954819.1 (tobamovirus multiplication protein 1-like [Cucurbita moschata])

HSP 1 Score: 99.4 bits (246), Expect = 4.6e-18
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 0 

Query: 1  MGRLQLNLTTTMEMGVTETSWWNDINESTFWQDRIFYSLCAVYALVSAVALVSL 55
          M RLQLNLTT MEMGVT +SWWNDINESTFWQDRIFYSLCAVYALVSAVAL+ L
Sbjct: 1  MTRLQLNLTTAMEMGVTASSWWNDINESTFWQDRIFYSLCAVYALVSAVALIQL 54

[Close]
BLAST of MELO3C020276.2 vs. TAIR10
Match: AT4G21790.1 (tobamovirus multiplication 1)

HSP 1 Score: 60.8 bits (146), Expect = 3.3e-10
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 19 TSWWNDINESTFWQDRIFYSLCAVYALVSAVALVSL 55
          TSWW+D+NEST WQD IF++LC  YALVSAVALV L
Sbjct: 21 TSWWDDVNESTQWQDGIFFALCGAYALVSAVALVQL 56

[Close]
BLAST of MELO3C020276.2 vs. TAIR10
Match: AT2G02180.1 (tobamovirus multiplication protein 3)

HSP 1 Score: 49.3 bits (116), Expect = 1.0e-06
Identity = 19/36 (52.78%), Postives = 28/36 (77.78%), Query Frame = 0 

Query: 19 TSWWNDINESTFWQDRIFYSLCAVYALVSAVALVSL 55
          ++WW+D+NES  WQDRIF+ L  +Y +VS VA++ L
Sbjct: 33 SNWWSDVNESPIWQDRIFHVLAVLYGIVSLVAVIQL 68

[Close]
BLAST of MELO3C020276.2 vs. TAIR10
Match: AT1G14530.1 (Protein of unknown function (DUF1084))

HSP 1 Score: 46.6 bits (109), Expect = 6.5e-06
Identity = 18/35 (51.43%), Postives = 26/35 (74.29%), Query Frame = 0 

Query: 20 SWWNDINESTFWQDRIFYSLCAVYALVSAVALVSL 55
          +WW D+NES  WQDRIF+ L  +Y +VS +A++ L
Sbjct: 24 NWWWDVNESPVWQDRIFHVLAVLYGIVSVIAVIQL 58

[Close]
BLAST of MELO3C020276.2 vs. Swiss-Prot
Match: sp|Q9FEG2|TOM1_ARATH (Tobamovirus multiplication protein 1 OS=Arabidopsis thaliana OX=3702 GN=TOM1 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.0e-09
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 19 TSWWNDINESTFWQDRIFYSLCAVYALVSAVALVSL 55
          TSWW+D+NEST WQD IF++LC  YALVSAVALV L
Sbjct: 21 TSWWDDVNESTQWQDGIFFALCGAYALVSAVALVQL 56

[Close]
BLAST of MELO3C020276.2 vs. Swiss-Prot
Match: sp|Q402F4|TOM1_TOBAC (Tobamovirus multiplication protein 1 OS=Nicotiana tabacum OX=4097 GN=TOM1 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-08
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 0 

Query: 1  MGRLQLNLTTTMEMGVTETSWWNDINESTFWQDRIFYSLCAVYALVSAVALVSL 55
          M RL L  ++++++    T+WW+ INES  WQD IFYSLCA YALVSAVAL+ L
Sbjct: 1  MTRLPLG-SSSIDIAGPTTNWWDQINESVQWQDGIFYSLCASYALVSAVALIQL 53

[Close]
BLAST of MELO3C020276.2 vs. Swiss-Prot
Match: sp|Q9ZUM2|TOM3_ARATH (Tobamovirus multiplication protein 3 OS=Arabidopsis thaliana OX=3702 GN=TOM3 PE=1 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 1.8e-05
Identity = 19/36 (52.78%), Postives = 28/36 (77.78%), Query Frame = 0 

Query: 19 TSWWNDINESTFWQDRIFYSLCAVYALVSAVALVSL 55
          ++WW+D+NES  WQDRIF+ L  +Y +VS VA++ L
Sbjct: 33 SNWWSDVNESPIWQDRIFHVLAVLYGIVSLVAVIQL 68

[Close]
BLAST of MELO3C020276.2 vs. Swiss-Prot
Match: sp|Q402F3|TOM3_TOBAC (Tobamovirus multiplication protein 3 OS=Nicotiana tabacum OX=4097 GN=TOM3 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 5.2e-05
Identity = 20/35 (57.14%), Postives = 26/35 (74.29%), Query Frame = 0 

Query: 20 SWWNDINESTFWQDRIFYSLCAVYALVSAVALVSL 55
          SWW ++N S  WQDR+F+ L  +Y +VSAVALV L
Sbjct: 25 SWWEEVNRSRAWQDRLFHVLAILYGIVSAVALVQL 59

[Close]
BLAST of MELO3C020276.2 vs. Swiss-Prot
Match: sp|Q948R8|THH1_ARATH (Protein TOM THREE HOMOLOG 1 OS=Arabidopsis thaliana OX=3702 GN=THH1 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.2e-04
Identity = 18/35 (51.43%), Postives = 26/35 (74.29%), Query Frame = 0 

Query: 20 SWWNDINESTFWQDRIFYSLCAVYALVSAVALVSL 55
          +WW D+NES  WQDRIF+ L  +Y +VS +A++ L
Sbjct: 24 NWWWDVNESPVWQDRIFHVLAVLYGIVSVIAVIQL 58

[Close]
BLAST of MELO3C020276.2 vs. TrEMBL
Match: tr|A0A1S3B2E1|A0A1S3B2E1_CUCME (tobamovirus multiplication protein 1 OS=Cucumis melo OX=3656 GN=LOC103485394 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.3e-20
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 0 

Query: 1  MGRLQLNLTTTMEMGVTETSWWNDINESTFWQDRIFYSLCAVYALVSAVALVSL 55
          MGRLQLNLTTTMEMGVT TSWWNDINESTFWQDRIFYSLCAVYALVSAVAL+ L
Sbjct: 1  MGRLQLNLTTTMEMGVTATSWWNDINESTFWQDRIFYSLCAVYALVSAVALIQL 54

[Close]
BLAST of MELO3C020276.2 vs. TrEMBL
Match: tr|A0A0A0LU94|A0A0A0LU94_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063580 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 8.1e-19
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0 

Query: 1  MGRLQLNLTTTMEMGVTETSWWNDINESTFWQDRIFYSLCAVYALVSAVALVSL 55
          M RLQLNLTTTMEMGVT +SWWNDINESTFWQDRIFYSLCAVYALVSAVAL+ L
Sbjct: 1  MTRLQLNLTTTMEMGVTASSWWNDINESTFWQDRIFYSLCAVYALVSAVALIQL 54

[Close]
BLAST of MELO3C020276.2 vs. TrEMBL
Match: tr|A0A1U8ANG2|A0A1U8ANG2_NELNU (tobamovirus multiplication protein 1-like OS=Nelumbo nucifera OX=4432 GN=LOC104604836 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-08
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 0 

Query: 1  MGRLQLNLTTTMEMGVTETSWWNDINESTFWQDRIFYSLCAVYALVSAVALVSL 55
          M RL LN+ + M  GV  ++WWN+INEST WQD IF++LCA YALVS VAL+ L
Sbjct: 1  MTRLTLNV-SPMAFGVASSNWWNEINESTSWQDGIFFALCAAYALVSLVALIQL 53

[Close]
BLAST of MELO3C020276.2 vs. TrEMBL
Match: tr|A0A0B0MIJ6|A0A0B0MIJ6_GOSAR (p-hydroxybenzoic acid efflux pump subunit AaeA OS=Gossypium arboreum OX=29729 GN=F383_23142 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.8e-08
Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 0 

Query: 1  MGRLQLNLTTTMEMGVTETSWWNDINESTFWQDRIFYSLCAVYALVSAVALVSL 55
          M ++ LNL T+ME+    + WW++INEST WQD IFY+LCA YALVS+VAL+ L
Sbjct: 4  MTKMPLNL-TSMELPALVSDWWDEINESTKWQDGIFYTLCAAYALVSSVALIQL 56

[Close]
BLAST of MELO3C020276.2 vs. TrEMBL
Match: tr|A0A1U8JIU0|A0A1U8JIU0_GOSHI (tobamovirus multiplication protein 1-like OS=Gossypium hirsutum OX=3635 GN=LOC107905942 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.8e-08
Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 0 

Query: 1  MGRLQLNLTTTMEMGVTETSWWNDINESTFWQDRIFYSLCAVYALVSAVALVSL 55
          M ++ LNL T+ME+    + WW++INEST WQD IFY+LCA YALVS+VAL+ L
Sbjct: 4  MTKMPLNL-TSMELPALVSDWWDEINESTKWQDGIFYTLCAAYALVSSVALIQL 56

The following BLAST results are available for this feature:
BLAST of MELO3C020276.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008441185.15.0e-2094.44PREDICTED: tobamovirus multiplication protein 1 [Cucumis melo][more]
XP_004145105.11.2e-1890.74PREDICTED: tobamovirus multiplication protein 1 [Cucumis sativus] >KGN64534.1 hy... [more]
XP_022933215.13.6e-1887.04tobamovirus multiplication protein 1-like [Cucurbita moschata][more]
XP_023519001.13.6e-1887.04tobamovirus multiplication protein 1 [Cucurbita pepo subsp. pepo][more]
XP_022954819.14.6e-1888.89tobamovirus multiplication protein 1-like [Cucurbita moschata][more]
BLAST of MELO3C020276.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G21790.13.3e-1075.00tobamovirus multiplication 1[more]
AT2G02180.11.0e-0652.78tobamovirus multiplication protein 3[more]
AT1G14530.16.5e-0651.43Protein of unknown function (DUF1084)[more]
BLAST of MELO3C020276.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FEG2|TOM1_ARATH6.0e-0975.00Tobamovirus multiplication protein 1 OS=Arabidopsis thaliana OX=3702 GN=TOM1 PE=... [more]
sp|Q402F4|TOM1_TOBAC1.0e-0857.41Tobamovirus multiplication protein 1 OS=Nicotiana tabacum OX=4097 GN=TOM1 PE=1 S... [more]
sp|Q9ZUM2|TOM3_ARATH1.8e-0552.78Tobamovirus multiplication protein 3 OS=Arabidopsis thaliana OX=3702 GN=TOM3 PE=... [more]
sp|Q402F3|TOM3_TOBAC5.2e-0557.14Tobamovirus multiplication protein 3 OS=Nicotiana tabacum OX=4097 GN=TOM3 PE=1 S... [more]
sp|Q948R8|THH1_ARATH1.2e-0451.43Protein TOM THREE HOMOLOG 1 OS=Arabidopsis thaliana OX=3702 GN=THH1 PE=2 SV=1[more]
BLAST of MELO3C020276.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B2E1|A0A1S3B2E1_CUCME3.3e-2094.44tobamovirus multiplication protein 1 OS=Cucumis melo OX=3656 GN=LOC103485394 PE=... [more]
tr|A0A0A0LU94|A0A0A0LU94_CUCSA8.1e-1990.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063580 PE=4 SV=1[more]
tr|A0A1U8ANG2|A0A1U8ANG2_NELNU1.3e-0861.11tobamovirus multiplication protein 1-like OS=Nelumbo nucifera OX=4432 GN=LOC1046... [more]
tr|A0A0B0MIJ6|A0A0B0MIJ6_GOSAR3.8e-0859.26p-hydroxybenzoic acid efflux pump subunit AaeA OS=Gossypium arboreum OX=29729 GN... [more]
tr|A0A1U8JIU0|A0A1U8JIU0_GOSHI3.8e-0859.26tobamovirus multiplication protein 1-like OS=Gossypium hirsutum OX=3635 GN=LOC10... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009457DUF1084
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020276.2.1MELO3C020276.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009457Domain of unknown function DUF1084PFAMPF06454DUF1084coord: 19..55
e-value: 3.1E-11
score: 43.1
NoneNo IPR availablePANTHERPTHR31142:SF3PROTEIN TOM THREE HOMOLOG 1-RELATEDcoord: 17..55
NoneNo IPR availablePANTHERPTHR31142FAMILY NOT NAMEDcoord: 17..55

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C020276.2Cucumber (Gy14) v2cgybmedB216
MELO3C020276.2Cucumber (Gy14) v1cgymedB338
MELO3C020276.2Cucurbita maxima (Rimu)cmamedB274
MELO3C020276.2Cucurbita maxima (Rimu)cmamedB496
MELO3C020276.2Cucurbita moschata (Rifu)cmomedB261
MELO3C020276.2Cucurbita moschata (Rifu)cmomedB483
MELO3C020276.2Cucurbita pepo (Zucchini)cpemedB630
MELO3C020276.2Cucurbita pepo (Zucchini)cpemedB694
MELO3C020276.2Wild cucumber (PI 183967)cpimedB240
MELO3C020276.2Cucumber (Chinese Long) v2cumedB239
MELO3C020276.2Bottle gourd (USVL1VR-Ls)lsimedB384
MELO3C020276.2Watermelon (Charleston Gray)medwcgB417
MELO3C020276.2Watermelon (97103) v1medwmB448
MELO3C020276.2Silver-seed gourdcarmedB0771
MELO3C020276.2Cucumber (Chinese Long) v3cucmedB247
MELO3C020276.2Watermelon (97103) v2medwmbB424
MELO3C020276.2Wax gourdmedwgoB531