MELO3C020273 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020273
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Major latex-like protein
Location	chr6 : 14059280 .. 14059743 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGTGGCCTCGAAGAATCCAAGGTAAGACTGGGTGTGGATGAGCCAAACAAATCGATAACTATGGAATGTCTTGAAGGAGATGTACTCAAAGAATTTGAAATATTCAAAGTGAAAGTTCAAGTTAAGGACAGTGATGTTGTTGGTGTGAACTCAGTTGTATGGTGTGTTGAGTTTGTGAAGGCAAACGAAGATGTGGCTCCACCACATAACCATCTTAAATGTGGAATTAAAGTATGCAAAGACCTCGATGCTTACCTTTGTAACAACTAAACTAATTAATCGAAAGTTGAAACTTATTTCCAAATGTTAGTTTAAATCTTTAAATACGAGGGTTTAGGGTGGGGCACTTGTAGTTTACTAAAATAGAAAGTGAAAATTGGAAGTGCCTCATTCATTTTTCTTCTTTCCTAACAAAAGCAAATAATAAATAAATAATAGGTTTAAATCCTATTATTTTTTTCC

mRNA sequence

GAGGTGGCCTCGAAGAATCCAAGGTAAGACTGGGTGTGGATGAGCCAAACAAATCGATAACTATGGAATGTCTTGAAGGAGATGTACTCAAAGAATTTGAAATATTCAAAGTGAAAGTTCAAGTTAAGGACAGTGATGTTGTTGGTGTGAACTCAGTTGTATGGTGTGTTGAGTTTGTGAAGGCAAACGAAGATGTGGCTCCACCACATAACCATCTTAAATGTGGAATTAAAGTATGCAAAGACCTCGATGCTTACCTTTGTAACAACTAAACTAATTAATCGAAAGTTGAAACTTATTTCCAAATGTTAGTTTAAATCTTTAAATACGAGGGTTTAGGGTGGGGCACTTGTAGTTTACTAAAATAGAAAGTGAAAATTGGAAGTGCCTCATTCATTTTTCTTCTTTCCTAACAAAAGCAAATAATAAATAAATAATAGGTTTAAATCCTATTATTTTTTTCC

Coding sequence (CDS)

ATGGAATGTCTTGAAGGAGATGTACTCAAAGAATTTGAAATATTCAAAGTGAAAGTTCAAGTTAAGGACAGTGATGTTGTTGGTGTGAACTCAGTTGTATGGTGTGTTGAGTTTGTGAAGGCAAACGAAGATGTGGCTCCACCACATAACCATCTTAAATGTGGAATTAAAGTATGCAAAGACCTCGATGCTTACCTTTGTAACAACTAA

Protein sequence

MECLEGDVLKEFEIFKVKVQVKDSDVVGVNSVVWCVEFVKANEDVAPPHNHLKCGIKVCKDLDAYLCNN*

Homology

[Close]

BLAST of MELO3C020273 vs. TrEMBL
Match: A0A0A0L771_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G337350 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.9e-31
Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1   MECLEGDVLKEFEIFKVKVQVKDSDVVGVNSVVWCVEFVKANEDVAPPHNHLKCGIKVCK 60
           MECLEGDVLKEF++FKVKVQVKDSDVVGVNSV WCVEFVKANEDVAPP+NHLKCGIKVCK
Sbjct: 85  MECLEGDVLKEFQVFKVKVQVKDSDVVGVNSVKWCVEFVKANEDVAPPNNHLKCGIKVCK 144

Query: 61  DLDAYLCNN 70
           DLDAYLCNN
Sbjct: 145 DLDAYLCNN 153

[Close]

BLAST of MELO3C020273 vs. TrEMBL
Match: A0A0A0LA17_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G321300 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.2e-18
Identity = 41/68 (60.29%), Postives = 58/68 (85.29%), Query Frame = 1


Query: 2   ECLEGDVLKEFEIFKVKVQVKDSDVVGVNSVVWCVEFVKANEDVAPPHNHLKCGIKVCKD 61
           ECLEGD+ K+F++FKVK++V D    G +SV WC+EFVK+NE+VAPP+++L+ G+K+CKD
Sbjct: 54  ECLEGDLFKDFDMFKVKIEVTDGGSSGNSSVNWCLEFVKSNENVAPPNDYLQFGVKICKD 113

Query: 62  LDAYLCNN 70
           +DAYL NN
Sbjct: 114 VDAYLSNN 121

[Close]

BLAST of MELO3C020273 vs. TrEMBL
Match: A0A0A0L7P3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G334350 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.2e-18
Identity = 44/65 (67.69%), Postives = 56/65 (86.15%), Query Frame = 1


Query: 2  ECLEGDVLKEFEIFKVKVQVKDSDVVGVNSVVWCVEFVKANEDVAPPHNHLKCGIKVCKD 61
          EC+EGD+LK+FE+F+VKV+V+D    GV+SV W V F+KANEDVAPPHN+L+ G+KVCK 
Sbjct: 28 ECVEGDLLKDFEMFQVKVEVRDGGKNGVSSVKWSVGFMKANEDVAPPHNYLQFGVKVCKG 87

Query: 62 LDAYL 67
          LDAYL
Sbjct: 88 LDAYL 92

[Close]

BLAST of MELO3C020273 vs. TrEMBL
Match: A0A0A0L7N6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G331330 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.7e-16
Identity = 39/68 (57.35%), Postives = 56/68 (82.35%), Query Frame = 1


Query: 2   ECLEGDVLKEFEIFKVKVQVKDSDVVGVNSVVWCVEFVKANEDVAPPHNHLKCGIKVCKD 61
           ECLEGD+ K+F+IF VK++V D    G +SV WC+E+VKANE+V PP+N+L+ G+K+CK+
Sbjct: 86  ECLEGDLFKDFDIFNVKIKVNDGGNNGNSSVNWCLEYVKANENVDPPNNYLQFGLKLCKN 145

Query: 62  LDAYLCNN 70
           +DA+L NN
Sbjct: 146 VDAFLGNN 153

[Close]

BLAST of MELO3C020273 vs. TrEMBL
Match: A0A0A0LCM8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G333840 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.1e-13
Identity = 40/68 (58.82%), Postives = 49/68 (72.06%), Query Frame = 1


Query: 2   ECLEGDVLKEFEIFKVKVQVKDSDVVGVNSVVWCVEFVKANEDVAPPHNHLKCGIKVCKD 61
           ECLEGD L+ FE+ K+K QV ++   G  +V W +EFVKANEDVA PH++L C  KV K 
Sbjct: 85  ECLEGDPLRNFEVLKLKFQVLENGNNG-GTVNWSIEFVKANEDVASPHHYLLCVTKVAKG 144

Query: 62  LDAYLCNN 70
           LD YLCNN
Sbjct: 145 LDDYLCNN 151

[Close]

BLAST of MELO3C020273 vs. TAIR10
Match: AT1G70850.1 (AT1G70850.1 MLP-like protein 34)

HSP 1 Score: 47.0 bits (110), Expect = 5.6e-06
Identity = 22/63 (34.92%), Postives = 36/63 (57.14%), Query Frame = 1


Query: 4   LEGDVLKEFEIFKVKVQVKDSDVVGVNSVVWCVEFVKANEDVAPPHNHLKCGIKVCKDLD 63
           +EGD++KE++ F + +QV        + V W  E+ K NE+VA P   L+  ++V K++D
Sbjct: 250 IEGDLMKEYKSFVITIQVTPKHGGSGSVVHWHFEYEKINEEVAHPETLLQFAVEVSKEID 309

Query: 64  AYL 67
            +L
Sbjct: 310 EHL 312

[Close]

BLAST of MELO3C020273 vs. NCBI nr
Match: gi|449464140|ref|XP_004149787.1| (PREDICTED: kirola-like [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 2.8e-31
Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1   MECLEGDVLKEFEIFKVKVQVKDSDVVGVNSVVWCVEFVKANEDVAPPHNHLKCGIKVCK 60
           MECLEGDVLKEF++FKVKVQVKDSDVVGVNSV WCVEFVKANEDVAPP+NHLKCGIKVCK
Sbjct: 85  MECLEGDVLKEFQVFKVKVQVKDSDVVGVNSVKWCVEFVKANEDVAPPNNHLKCGIKVCK 144

Query: 61  DLDAYLCNN 70
           DLDAYLCNN
Sbjct: 145 DLDAYLCNN 153

[Close]

BLAST of MELO3C020273 vs. NCBI nr
Match: gi|659131188|ref|XP_008465556.1| (PREDICTED: MLP-like protein 28 [Cucumis melo])

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-18
Identity = 42/68 (61.76%), Postives = 58/68 (85.29%), Query Frame = 1


Query: 2   ECLEGDVLKEFEIFKVKVQVKDSDVVGVNSVVWCVEFVKANEDVAPPHNHLKCGIKVCKD 61
           ECLEGD+ K+F++FKVK++V D    G +SV WC+EFVK+NE+VAPP+++L+ G K+CKD
Sbjct: 86  ECLEGDLFKDFDMFKVKIEVTDGGSSGNSSVNWCLEFVKSNENVAPPNDYLQFGAKICKD 145

Query: 62  LDAYLCNN 70
           +DAYLCNN
Sbjct: 146 VDAYLCNN 153

[Close]

BLAST of MELO3C020273 vs. NCBI nr
Match: gi|700202686|gb|KGN57819.1| (hypothetical protein Csa_3G321300 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 6.0e-18
Identity = 41/68 (60.29%), Postives = 58/68 (85.29%), Query Frame = 1


Query: 2   ECLEGDVLKEFEIFKVKVQVKDSDVVGVNSVVWCVEFVKANEDVAPPHNHLKCGIKVCKD 61
           ECLEGD+ K+F++FKVK++V D    G +SV WC+EFVK+NE+VAPP+++L+ G+K+CKD
Sbjct: 54  ECLEGDLFKDFDMFKVKIEVTDGGSSGNSSVNWCLEFVKSNENVAPPNDYLQFGVKICKD 113

Query: 62  LDAYLCNN 70
           +DAYL NN
Sbjct: 114 VDAYLSNN 121

[Close]

BLAST of MELO3C020273 vs. NCBI nr
Match: gi|449456188|ref|XP_004145832.1| (PREDICTED: MLP-like protein 34 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 6.0e-18
Identity = 41/68 (60.29%), Postives = 58/68 (85.29%), Query Frame = 1


Query: 2   ECLEGDVLKEFEIFKVKVQVKDSDVVGVNSVVWCVEFVKANEDVAPPHNHLKCGIKVCKD 61
           ECLEGD+ K+F++FKVK++V D    G +SV WC+EFVK+NE+VAPP+++L+ G+K+CKD
Sbjct: 86  ECLEGDLFKDFDMFKVKIEVTDGGSSGNSSVNWCLEFVKSNENVAPPNDYLQFGVKICKD 145

Query: 62  LDAYLCNN 70
           +DAYL NN
Sbjct: 146 VDAYLSNN 153

[Close]

BLAST of MELO3C020273 vs. NCBI nr
Match: gi|659114442|ref|XP_008457056.1| (PREDICTED: kirola-like [Cucumis melo])

HSP 1 Score: 98.2 bits (243), Expect = 6.0e-18
Identity = 44/65 (67.69%), Postives = 56/65 (86.15%), Query Frame = 1


Query: 2   ECLEGDVLKEFEIFKVKVQVKDSDVVGVNSVVWCVEFVKANEDVAPPHNHLKCGIKVCKD 61
           EC+EGD+LK+FE+F+VKV+V+D    GV+SV W V F+KANEDVAPPHN+L+ G+KVCK 
Sbjct: 84  ECVEGDLLKDFEMFQVKVEVRDGGKNGVSSVKWSVGFMKANEDVAPPHNYLQFGVKVCKG 143

Query: 62  LDAYL 67
           LDAYL
Sbjct: 144 LDAYL 148

The following BLAST results are available for this feature:

BLAST of MELO3C020273 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L771_CUCSA	1.9e-31	94.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G337350 PE=4 SV=1	[more]
A0A0A0LA17_CUCSA	4.2e-18	60.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G321300 PE=4 SV=1	[more]
A0A0A0L7P3_CUCSA	4.2e-18	67.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G334350 PE=4 SV=1	[more]
A0A0A0L7N6_CUCSA	6.7e-16	57.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G331330 PE=4 SV=1	[more]
A0A0A0LCM8_CUCSA	3.1e-13	58.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G333840 PE=4 SV=1	[more]

BLAST of MELO3C020273 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G70850.1	5.6e-06	34.92	MLP-like protein 34	[more]

BLAST of MELO3C020273 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449464140\|ref\|XP_004149787.1\|	2.8e-31	94.20	PREDICTED: kirola-like [Cucumis sativus]	[more]
gi\|659131188\|ref\|XP_008465556.1\|	1.2e-18	61.76	PREDICTED: MLP-like protein 28 [Cucumis melo]	[more]
gi\|700202686\|gb\|KGN57819.1\|	6.0e-18	60.29	hypothetical protein Csa_3G321300 [Cucumis sativus]	[more]
gi\|449456188\|ref\|XP_004145832.1\|	6.0e-18	60.29	PREDICTED: MLP-like protein 34 [Cucumis sativus]	[more]
gi\|659114442\|ref\|XP_008457056.1\|	6.0e-18	67.69	PREDICTED: kirola-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000916	Bet_v_I/MLP
IPR023393	START-like_dom_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0006952	defense response
GO:0009607	response to biotic stimulus

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0009607	response to biotic stimulus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU62107	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020273T1	MELO3C020273T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU62107	MU62107	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000916	Bet v I/Major latex protein	PFAM	PF00407	Bet_v_1	coord: 2..68 score: 1.
IPR023393	START-like domain	GENE3D	G3DSA:3.30.530.20		coord: 2..69 score: 2.7
None	No IPR available	unknown	SSF55961	Bet v1-like	coord: 3..68 score: 1.92

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C020273	Csa3G334350	Cucumber (Chinese Long) v2	cumeB246
MELO3C020273	Cla013182	Watermelon (97103) v1	mewmB461
MELO3C020273	ClCG05G011110	Watermelon (Charleston Gray)	mewcgB427
MELO3C020273	Cla97C05G093320	Watermelon (97103) v2	mewmbB434
MELO3C020273	Bhi01G001517	Wax gourd	mewgoB542
MELO3C020273	CSPI03G21740	Wild cucumber (PI 183967)	cpimeB243
MELO3C020273	Cucsa.012540	Cucumber (Gy14) v1	cgymeB343
MELO3C020273	CmaCh14G008390	Cucurbita maxima (Rimu)	cmameB243
MELO3C020273	CmoCh14G008550	Cucurbita moschata (Rifu)	cmomeB231
MELO3C020273	Lsi05G003200	Bottle gourd (USVL1VR-Ls)	lsimeB368
MELO3C020273	CsaV3_3G021240	Cucumber (Chinese Long) v3	cucmeB249

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020273	Cucurbita pepo (Zucchini)	cpemeB529
MELO3C020273	Cucurbita pepo (Zucchini)	cpemeB586
MELO3C020273	Cucumber (Gy14) v2	cgybmeB212
MELO3C020273	Silver-seed gourd	carmeB0515
MELO3C020273	Silver-seed gourd	carmeB0756
MELO3C020273	Cucurbita maxima (Rimu)	cmameB431
MELO3C020273	Cucurbita moschata (Rifu)	cmomeB421