MELO3C020258 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020258
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Putative Ty3-gypsy-like retroelement pol polyprotein
Location	chr6 : 14433328 .. 14433765 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGATGTACCATTTCAAGTTTTAGAAAAGATTAATGTTAATACCCATAAAGTTCATCTTCGGGGTAAGTATCATGTGCATGCTACATTTAATATTGTTGACTTATCCTTGTTTGATGAAGATAACTTTGATTCGAGGACGAATCCTTTCGAAGAGCGGGAAAATGGTAAGATGTTGAATAACAAAGAAGAAAATGAGACTCAACAAGCTCACACCAACTCAAATGAAGAGGAAAATGAAGCACATTCTGGAAATTCATGGGAGAACTTTCAAAGTCAAACCAATCAAGAGGTAATCATTATGGCTCAAGGCTCAATGGCAAAAGCTAGAGCTAAAAGACTTCAAGATGGATTAAGTGCTTGTTTACAAGCTAAATTTTTATCTTTAATAAAGAGTTGGAACTTTAAAAGGCACTTGGACACCCAAGGGTCGTAA

mRNA sequence

ATGGGAGATGTACCATTTCAAGTTTTAGAAAAGATTAATGTTAATACCCATAAAGTTCATCTTCGGGGTAAGTATCATGTGCATGCTACATTTAATATTGTTGACTTATCCTTGTTTGATGAAGATAACTTTGATTCGAGGACGAATCCTTTCGAAGAGCGGGAAAATGGTAAGATGTTGAATAACAAAGAAGAAAATGAGACTCAACAAGCTCACACCAACTCAAATGAAGAGGAAAATGAAGCACATTCTGGAAATTCATGGGAGAACTTTCAAAGTCAAACCAATCAAGAGGTAATCATTATGGCTCAAGGCTCAATGGCAAAAGCTAGAGCTAAAAGACTTCAAGATGGATTAAGTGCTTGTTTACAAGCTAAATTTTTATCTTTAATAAAGAGTTGGAACTTTAAAAGGCACTTGGACACCCAAGGGTCGTAA

Coding sequence (CDS)

ATGGGAGATGTACCATTTCAAGTTTTAGAAAAGATTAATGTTAATACCCATAAAGTTCATCTTCGGGGTAAGTATCATGTGCATGCTACATTTAATATTGTTGACTTATCCTTGTTTGATGAAGATAACTTTGATTCGAGGACGAATCCTTTCGAAGAGCGGGAAAATGGTAAGATGTTGAATAACAAAGAAGAAAATGAGACTCAACAAGCTCACACCAACTCAAATGAAGAGGAAAATGAAGCACATTCTGGAAATTCATGGGAGAACTTTCAAAGTCAAACCAATCAAGAGGTAATCATTATGGCTCAAGGCTCAATGGCAAAAGCTAGAGCTAAAAGACTTCAAGATGGATTAAGTGCTTGTTTACAAGCTAAATTTTTATCTTTAATAAAGAGTTGGAACTTTAAAAGGCACTTGGACACCCAAGGGTCGTAA

Protein sequence

MGDVPFQVLEKINVNTHKVHLRGKYHVHATFNIVDLSLFDEDNFDSRTNPFEERENGKMLNNKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEVIIMAQGSMAKARAKRLQDGLSACLQAKFLSLIKSWNFKRHLDTQGS*

Homology

[Close]

BLAST of MELO3C020258 vs. TrEMBL
Match: A5B5T3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016008 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.3e-09
Identity = 45/123 (36.59%), Postives = 66/123 (53.66%), Query Frame = 1


Query: 2   GDVPFQVLEKINVNTHKVHLRGKYHVHATFNIVDLSLFDEDNFDSRTNPFEERENGKMLN 61
           GD PFQVLE+IN N +K+ L G+Y++ AT N+ DLS FD  + DSRTNPFEER N     
Sbjct: 401 GDGPFQVLERINDNAYKLDLPGEYNISATVNVSDLSPFDVGD-DSRTNPFEERGN----- 460

Query: 62  NKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEVIIMAQGSMAKARAKRLQDGLSA 121
               +E QQA                         ++ + +  G + KAR+K++++ L+ 
Sbjct: 461 ----DENQQAF------------------------KDPLHVPVGPITKARSKKIKEALNG 489

Query: 122 CLQ 125
            +Q
Sbjct: 521 LIQ 489

[Close]

BLAST of MELO3C020258 vs. TrEMBL
Match: A5C070_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041099 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.7e-09
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 1


Query: 2    GDVPFQVLEKINVNTHKVHLRGKYHVHATFNIVDLSLFDEDNFDSRTNPFEEREN 57
            GD PFQVLE+IN N +K+ L G+Y++ ATFN+ DLS FD  + DSRTNPFE+R N
Sbjct: 1029 GDGPFQVLERINDNAYKLDLPGEYNISATFNVSDLSPFDVSD-DSRTNPFEKRGN 1082

[Close]

BLAST of MELO3C020258 vs. TrEMBL
Match: A0A151R9Y1_CAJCA (Transposon Ty3-I Gag-Pol polyprotein (Fragment) OS=Cajanus cajan GN=KK1_039539 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.4e-09
Identity = 48/142 (33.80%), Postives = 78/142 (54.93%), Query Frame = 1


Query: 2   GDVPFQVLEKINVNTHKVHLRGKYHVHATFNIVDLSLFD-EDNFDS-RTNPFEERENGKM 61
           GD PFQVLEKIN N +K+ L G+Y V ++FN+ DL+ FD  D F + RTN  +EREN   
Sbjct: 303 GDGPFQVLEKINDNAYKIDLPGEYGVSSSFNVADLTHFDARDEFIALRTNAPQERENDVD 362

Query: 62  LNNKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEVIIMAQGSMAKARAKRLQDGL 121
           +    + +TQ+AH    +++ + H        +   +Q+ I +  G M +   K+ Q+  
Sbjct: 363 I----KAQTQEAH----DQKAQVHD-------EEDKDQDPIQILGGPMTRGMLKKTQE-- 422

Query: 122 SACLQAKFLSLIKSWNFKRHLD 142
              LQ K   L+++    +H++
Sbjct: 423 --ALQHKVAHLLETQQSTQHME 425

[Close]

BLAST of MELO3C020258 vs. TrEMBL
Match: A5BSW9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021658 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.7e-09
Identity = 44/123 (35.77%), Postives = 65/123 (52.85%), Query Frame = 1


Query: 2    GDVPFQVLEKINVNTHKVHLRGKYHVHATFNIVDLSLFDEDNFDSRTNPFEERENGKMLN 61
            GD PFQVLE+IN N +K+ L  +Y++ ATFN+ DLS FD  + DSRTNPFEE  N     
Sbjct: 1205 GDGPFQVLERINDNAYKLDLPXEYNISATFNVXDLSPFDVGD-DSRTNPFEESGN----- 1264

Query: 62   NKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEVIIMAQGSMAKARAKRLQDGLSA 121
                +E QQA                         ++ + +  G + KAR+K++++ L+ 
Sbjct: 1265 ----DENQQAF------------------------KDPLHVXXGPITKARSKKIKEALNG 1293

Query: 122  CLQ 125
             +Q
Sbjct: 1325 LIQ 1293

[Close]

BLAST of MELO3C020258 vs. TrEMBL
Match: A5BSP7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001042 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.7e-09
Identity = 43/123 (34.96%), Postives = 66/123 (53.66%), Query Frame = 1


Query: 2    GDVPFQVLEKINVNTHKVHLRGKYHVHATFNIVDLSLFDEDNFDSRTNPFEERENGKMLN 61
            GD PFQVLE+IN N +K+ + G+Y++ ATFN+ DLS FD  + DS TNPFEE+ N     
Sbjct: 1184 GDGPFQVLERINDNAYKLDIPGEYNISATFNVSDLSPFDVGD-DSXTNPFEEKGN----- 1243

Query: 62   NKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEVIIMAQGSMAKARAKRLQDGLSA 121
                +E QQA                         ++ + +  G + KAR+K++++ L+ 
Sbjct: 1244 ----DENQQAF------------------------KDPLHVLVGPITKARSKKIKEALNG 1272

Query: 122  CLQ 125
             +Q
Sbjct: 1304 LIQ 1272

[Close]

BLAST of MELO3C020258 vs. NCBI nr
Match: gi|729329848|ref|XP_010536283.1| (PREDICTED: uncharacterized protein LOC104811321 [Tarenaya hassleriana])

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 46/127 (36.22%), Postives = 64/127 (50.39%), Query Frame = 1


Query: 2   GDVPFQVLEKINVNTHKVHLRGKYHVHATFNIVDLSLFD-EDNFDSRTNPFEERENGKML 61
           G+ PF+VLE+IN N +K+ L G Y V  TFN+ D S FD +D  D RTNPFEE EN + +
Sbjct: 74  GEGPFRVLEQINNNAYKIKLPGGYGVSPTFNVADFSPFDADDEQDLRTNPFEEEENDEDI 133

Query: 62  NNKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEVIIMAQGSMAKARAKRLQDGLS 121
              ++    + H+N  EE                      +  QG + +AR KRLQ    
Sbjct: 134 TRTQD----RPHSNVQEE----------------------LQVQGPLTRARVKRLQAAFV 174

Query: 122 ACLQAKF 128
             +Q +F
Sbjct: 194 RMIQGEF 174

[Close]

BLAST of MELO3C020258 vs. NCBI nr
Match: gi|729352504|ref|XP_010543945.1| (PREDICTED: uncharacterized protein LOC104816714 [Tarenaya hassleriana])

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 45/127 (35.43%), Postives = 68/127 (53.54%), Query Frame = 1


Query: 2   GDVPFQVLEKINVNTHKVHLRGKYHVHATFNIVDLSLFDED-NFDSRTNPFEERENGKML 61
           GD PF+VLE+IN N +K+ L G+Y++ +TFN+ DL+ FD D N D R NPF+E  N    
Sbjct: 71  GDGPFRVLERINNNAYKIELPGEYNISSTFNVADLARFDADNNSDLRANPFQEEGN---- 130

Query: 62  NNKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEVIIMAQGSMAKARAKRLQDGLS 121
              +EN  QQ     +   +    GN           E  + + G + +A+AKRL++  +
Sbjct: 131 ---DENILQQGGGKRSGVGDSQGDGNEL--------LEQRLKSDGPITRAKAKRLKEAFT 182

Query: 122 ACLQAKF 128
              Q +F
Sbjct: 191 MLFQEEF 182

[Close]

BLAST of MELO3C020258 vs. NCBI nr
Match: gi|747106545|ref|XP_011101567.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105179621 [Sesamum indicum])

HSP 1 Score: 72.0 bits (175), Expect = 9.6e-10
Identity = 49/140 (35.00%), Postives = 74/140 (52.86%), Query Frame = 1


Query: 2    GDVPFQVLEKINVNTHKVHLRGKYHVHATFNIVDLS-LFDEDNFDSRTNPFEERENGKML 61
            GD PF+VLE+IN N++K+ L G+Y V ATFN+ DLS  +D DN +SRT PF+E E+ + +
Sbjct: 945  GDGPFRVLERINDNSYKLDLPGQYGVSATFNVSDLSPFYDADNEESRTTPFQEGEDDRNI 1004

Query: 62   NNKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEVIIMAQGSMAKARAKRLQDGLS 121
                    QQA                 +  Q   +Q++ I   G M + R KR+Q+ + 
Sbjct: 1005 KG-----VQQA-----------------KEIQDPMDQDLTI-GSGPMTRERLKRMQEVIE 1061

Query: 122  ACLQAKFLSLIKSWNFKRHL 141
            A       + IKS +  +H+
Sbjct: 1065 AQSNLVLANGIKSQSEAQHV 1061

[Close]

BLAST of MELO3C020258 vs. NCBI nr
Match: gi|747107717|ref|XP_011102169.1| (PREDICTED: uncharacterized protein LOC105180205, partial [Sesamum indicum])

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-09
Identity = 49/140 (35.00%), Postives = 72/140 (51.43%), Query Frame = 1


Query: 2   GDVPFQVLEKINVNTHKVHLRGKYHVHATFNIVDLS-LFDEDNFDSRTNPFEERENGKML 61
           GD PF+VLE+IN N  K+ L G+Y V ATFN+ DLS  +D DN +SRT PF+E E+ + +
Sbjct: 72  GDGPFRVLERINDNNSKLDLPGQYGVSATFNVSDLSPFYDADNEESRTTPFQEEEDDRNI 131

Query: 62  NNKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEVIIMAQGSMAKARAKRLQDGLS 121
                   QQA                 +  Q   +Q++ I   G M + R KR+Q+ + 
Sbjct: 132 EG-----VQQA-----------------KEIQDPMDQDLAI-GSGPMTRERLKRMQEVIQ 188

Query: 122 ACLQAKFLSLIKSWNFKRHL 141
           A       + IKS +  +H+
Sbjct: 192 AQSNLVLANGIKSQSEAQHV 188

[Close]

BLAST of MELO3C020258 vs. NCBI nr
Match: gi|1021497402|ref|XP_016191799.1| (PREDICTED: uncharacterized protein LOC107632644 [Arachis ipaensis])

HSP 1 Score: 70.1 bits (170), Expect = 3.7e-09
Identity = 46/116 (39.66%), Postives = 64/116 (55.17%), Query Frame = 1


Query: 2    GDVPFQVLEKINVNTHKVHLRGKYHVHATFNIVDLSLFDEDNFDSRTNPFEERENGKMLN 61
            GD PFQVLEKIN N +K+ L G+Y+V ATFN+ DLS FD    +SRTN FEE  N     
Sbjct: 1063 GDGPFQVLEKINNNAYKIDLLGEYNVSATFNVSDLSPFDMGT-NSRTNLFEEGGNDTC-- 1122

Query: 62   NKEENETQQAHTNSNEEENEAHSGNSWENFQSQTNQEVIIMAQGSMAKARAKRLQD 118
                +E QQ H+     + +  +GN               + +G + +ARAK+L++
Sbjct: 1123 ----SERQQGHS-----KTQGQNGN-------------FTLPEGPITRARAKKLKE 1153

The following BLAST results are available for this feature:

BLAST of MELO3C020258 vs. TrEMBL


Match Name	E-value	Identity	Description
A5B5T3_VITVI	3.3e-09	36.59	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016008 PE=4 SV=1	[more]
A5C070_VITVI	5.7e-09	61.82	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041099 PE=4 SV=1	[more]
A0A151R9Y1_CAJCA	7.4e-09	33.80	Transposon Ty3-I Gag-Pol polyprotein (Fragment) OS=Cajanus cajan GN=KK1_039539 P...	[more]
A5BSW9_VITVI	9.7e-09	35.77	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021658 PE=4 SV=1	[more]
A5BSP7_VITVI	9.7e-09	34.96	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001042 PE=4 SV=1	[more]

BLAST of MELO3C020258 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|729329848\|ref\|XP_010536283.1\|	1.1e-10	36.22	PREDICTED: uncharacterized protein LOC104811321 [Tarenaya hassleriana]	[more]
gi\|729352504\|ref\|XP_010543945.1\|	1.1e-10	35.43	PREDICTED: uncharacterized protein LOC104816714 [Tarenaya hassleriana]	[more]
gi\|747106545\|ref\|XP_011101567.1\|	9.6e-10	35.00	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105179621 [Sesamum in...	[more]
gi\|747107717\|ref\|XP_011102169.1\|	1.6e-09	35.00	PREDICTED: uncharacterized protein LOC105180205, partial [Sesamum indicum]	[more]
gi\|1021497402\|ref\|XP_016191799.1\|	3.7e-09	39.66	PREDICTED: uncharacterized protein LOC107632644 [Arachis ipaensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020258T1	MELO3C020258T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 61..81 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020258	Watermelon (97103) v2	mewmbB434
MELO3C020258	Wax gourd	mewgoB542
MELO3C020258	Cucumber (Gy14) v1	cgymeB609
MELO3C020258	Cucurbita maxima (Rimu)	cmameB243
MELO3C020258	Cucurbita maxima (Rimu)	cmameB431
MELO3C020258	Cucurbita moschata (Rifu)	cmomeB231
MELO3C020258	Cucurbita moschata (Rifu)	cmomeB421
MELO3C020258	Wild cucumber (PI 183967)	cpimeB243
MELO3C020258	Cucumber (Chinese Long) v2	cumeB246
MELO3C020258	Watermelon (Charleston Gray)	mewcgB427
MELO3C020258	Watermelon (97103) v1	mewmB461
MELO3C020258	Cucurbita pepo (Zucchini)	cpemeB529
MELO3C020258	Cucurbita pepo (Zucchini)	cpemeB586
MELO3C020258	Bottle gourd (USVL1VR-Ls)	lsimeB368
MELO3C020258	Cucumber (Gy14) v2	cgybmeB212
MELO3C020258	Silver-seed gourd	carmeB0515
MELO3C020258	Silver-seed gourd	carmeB0756
MELO3C020258	Cucumber (Chinese Long) v3	cucmeB249