MELO3C020247.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020247.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr06 : 15725854 .. 15727055 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATACTTTCCTTCAAACTGGTAACGCATGTGAAAGACTGTTGGAAGTCGACAAAGCTATAATGAATATAGAAAACCTCCTTGAAGCCAAAATTAACGTAAGGTACAACTACTGTAGTTTCATTCCAGCCACCATTAAAATCAAAGACAAAAATGGCCATTCTTTCATTGTTCACATAGTCACAATATGCTCGGGTAAGTGGTTAGCAGAACGTGATGTTAAAATAAACAGTTCTTTCAAGAGACAGGTAGCCATTGAATTTGACAATTTCAACTCAGAAGCTAAGCAATTCACCTTTTCTGTCAATTTGGCAATTCTGGCCGACGAGTTTGAAATCCCAAAAAACAAATCATTAATGGCAGAGTTGACATTGGAAGGAAATCCCACACATGCCAAGGAAATTAATGACAAGGATCTTCGAAAATCTGGTATAAAAAACTCTAAGAGGCTTAAATTAGTAGAAAGTGGATGGAAAAAAGAGTCGTAATTACAACTAGCAATGATGAGATGAGCTCACACCGTGAGCATTCATTCGAAGATATTAATGAGATGGATAACGTTTCTGCTAGATTCGGAGGAAAGAGAAAAGTCTTCTTTTTATCACCAAAAAATAAAACCATCTTCTTCAATACTAATCACGCTTCAGCAATACAAACTGAAAATGCTGAGTCATCAAGAAAATTCAACAGCAATGATGAACCAAAGCAAAGAAAGAAACCAGGAAAAAAAAGGAATACAGGCCTAAAGCCCACTATTCCTAGCCTAATTGTAAAACCAACCCAATCGAACCCTCTTGATGACCAACACAAAGAAGGTGATCTTACTATTGATCTGGGCCACCTATCTATTATAAACCCACAACTTCATATTCAATTTGAAGACCACTCGGACTCCAGACCAGATATTGTCAAGGCAACACAAGACACAGATCATCAAAAGCATAAGGCACAAATTGCAAATATAAAAGATCCTCAAGAAAATGTTTTGCCGAAAACTTCTCCTGAGGATGACATAATGATCAAAGAAGAAGAAGATGATTTCAAGGTCAAACTAATCCAGTGGCTTAAAGAAAACAACCTGAAATTGGCTACCACAATAAATGATCCTGCTCAACAGAAGGTCGCAAAAACTGCTTCTGATCAGGTTGGAATTGAGGATGAACGGGTTAAAGAAAATGAGGGAAATAAGTCCTTCAAATGA

mRNA sequence

ATGGATACTTTCCTTCAAACTGGTAACGCATGTGAAAGACTGTTGGAAGTCGACAAAGCTATAATGAATATAGAAAACCTCCTTGAAGCCAAAATTAACGTAAGGTACAACTACTGTAGTTTCATTCCAGCCACCATTAAAATCAAAGACAAAAATGGCCATTCTTTCATTGTTCACATAGTCACAATATGCTCGGGTAAGTGGTTAGCAGAACGTGATGTTAAAATAAACAGTTCTTTCAAGAGACAGGTAGCCATTGAATTTGACAATTTCAACTCAGAAGCTAAGCAATTCACCTTTTCTGTCAATTTGGCAATTCTGGCCGACGAGTTTGAAATCCCAAAAAACAAATCATTAATGGCAGAGTTGACATTGGAAGGAAATCCCACACATGCCAAGGAAATTAATGACAAGGATCTTCGAAAATCTGCAATACAAACTGAAAATGCTGAGTCATCAAGAAAATTCAACAGCAATGATGAACCAAAGCAAAGAAAGAAACCAGGAAAAAAAAGGAATACAGGCCTAAAGCCCACTATTCCTAGCCTAATTGTAAAACCAACCCAATCGAACCCTCTTGATGACCAACACAAAGAAGGTGATCTTACTATTGATCTGGGCCACCTATCTATTATAAACCCACAACTTCATATTCAATTTGAAGACCACTCGGACTCCAGACCAGATATTGTCAAGGCAACACAAGACACAGATCATCAAAAGCATAAGGCACAAATTGCAAATATAAAAGATCCTCAAGAAAATGTTTTGCCGAAAACTTCTCCTGAGGATGACATAATGATCAAAGAAGAAGAAGATGATTTCAAGGTCAAACTAATCCAGTGGCTTAAAGAAAACAACCTGAAATTGGCTACCACAATAAATGATCCTGCTCAACAGAAGGTCGCAAAAACTGCTTCTGATCAGGTTGGAATTGAGGATGAACGGGTTAAAGAAAATGAGGGAAATAAGTCCTTCAAATGA

Coding sequence (CDS)

ATGGATACTTTCCTTCAAACTGGTAACGCATGTGAAAGACTGTTGGAAGTCGACAAAGCTATAATGAATATAGAAAACCTCCTTGAAGCCAAAATTAACGTAAGGTACAACTACTGTAGTTTCATTCCAGCCACCATTAAAATCAAAGACAAAAATGGCCATTCTTTCATTGTTCACATAGTCACAATATGCTCGGGTAAGTGGTTAGCAGAACGTGATGTTAAAATAAACAGTTCTTTCAAGAGACAGGTAGCCATTGAATTTGACAATTTCAACTCAGAAGCTAAGCAATTCACCTTTTCTGTCAATTTGGCAATTCTGGCCGACGAGTTTGAAATCCCAAAAAACAAATCATTAATGGCAGAGTTGACATTGGAAGGAAATCCCACACATGCCAAGGAAATTAATGACAAGGATCTTCGAAAATCTGCAATACAAACTGAAAATGCTGAGTCATCAAGAAAATTCAACAGCAATGATGAACCAAAGCAAAGAAAGAAACCAGGAAAAAAAAGGAATACAGGCCTAAAGCCCACTATTCCTAGCCTAATTGTAAAACCAACCCAATCGAACCCTCTTGATGACCAACACAAAGAAGGTGATCTTACTATTGATCTGGGCCACCTATCTATTATAAACCCACAACTTCATATTCAATTTGAAGACCACTCGGACTCCAGACCAGATATTGTCAAGGCAACACAAGACACAGATCATCAAAAGCATAAGGCACAAATTGCAAATATAAAAGATCCTCAAGAAAATGTTTTGCCGAAAACTTCTCCTGAGGATGACATAATGATCAAAGAAGAAGAAGATGATTTCAAGGTCAAACTAATCCAGTGGCTTAAAGAAAACAACCTGAAATTGGCTACCACAATAAATGATCCTGCTCAACAGAAGGTCGCAAAAACTGCTTCTGATCAGGTTGGAATTGAGGATGAACGGGTTAAAGAAAATGAGGGAAATAAGTCCTTCAAATGA

Protein sequence

MDTFLQTGNACERLLEVDKAIMNIENLLEAKINVRYNYCSFIPATIKIKDKNGHSFIVHIVTICSGKWLAERDVKINSSFKRQVAIEFDNFNSEAKQFTFSVNLAILADEFEIPKNKSLMAELTLEGNPTHAKEINDKDLRKSAIQTENAESSRKFNSNDEPKQRKKPGKKRNTGLKPTIPSLIVKPTQSNPLDDQHKEGDLTIDLGHLSIINPQLHIQFEDHSDSRPDIVKATQDTDHQKHKAQIANIKDPQENVLPKTSPEDDIMIKEEEDDFKVKLIQWLKENNLKLATTINDPAQQKVAKTASDQVGIEDERVKENEGNKSFK

Homology

[Close]

BLAST of MELO3C020247.2 vs. NCBI nr
Match: ADN33672.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-14
Identity = 43/106 (40.57%), Postives = 65/106 (61.32%), Query Frame = 0


Query: 1   MDTFLQTGNACERLLEVDKAIMNIENLLEAKINVRYNYCSFIPATIKIKDKNGHSFIVHI 60
           +++F+Q G+AC   +EV K    + +L+EA I V+ NY  FIPA IK+ DK   S+I+ +
Sbjct: 230 LESFVQIGDACGGFMEVAKETRELTDLIEASIRVKDNYSGFIPAFIKLIDKEERSYIIQV 289

Query: 61  VTICSGKWLAERDVKINSSFKRQVAIEFDNFNSEAKQFTFSVNLAI 107
           +    GKW   R+  I+ +F R+ A  FD FN  ++Q+ F  NLAI
Sbjct: 290 IVKTEGKWHLGRNPSIHGTFTREAARRFDEFNLNSEQYFFEGNLAI 335

[Close]

BLAST of MELO3C020247.2 vs. NCBI nr
Match: KGN61118.1 (hypothetical protein Csa_2G055060 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 8.7e-07
Identity = 35/83 (42.17%), Postives = 46/83 (55.42%), Query Frame = 0


Query: 41  FIPATIKIKDKNGHSFIVHIVTICSGKWLAERDVKINSSFKRQVAIEFDNFNSEAKQFTF 100
           F+PA I+I D  G+SF + IV+   GKWL ER+V+ +  FK Q    F  FN  AKQFTF
Sbjct: 8   FVPAYIRITDDLGNSFPIQIVSHTQGKWLVERNVRKHGIFKSQATTSFGEFNPNAKQFTF 67

Query: 101 SVNLAILADEFEIPKNKSLMAEL 124
             +  +        KNK L  E+
Sbjct: 68  IGSEGLPPKHPTSSKNKVLNDEI 90

[Close]

BLAST of MELO3C020247.2 vs. TrEMBL
Match: tr|E5GB30|E5GB30_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 7.5e-15
Identity = 43/106 (40.57%), Postives = 65/106 (61.32%), Query Frame = 0


Query: 1   MDTFLQTGNACERLLEVDKAIMNIENLLEAKINVRYNYCSFIPATIKIKDKNGHSFIVHI 60
           +++F+Q G+AC   +EV K    + +L+EA I V+ NY  FIPA IK+ DK   S+I+ +
Sbjct: 230 LESFVQIGDACGGFMEVAKETRELTDLIEASIRVKDNYSGFIPAFIKLIDKEERSYIIQV 289

Query: 61  VTICSGKWLAERDVKINSSFKRQVAIEFDNFNSEAKQFTFSVNLAI 107
           +    GKW   R+  I+ +F R+ A  FD FN  ++Q+ F  NLAI
Sbjct: 290 IVKTEGKWHLGRNPSIHGTFTREAARRFDEFNLNSEQYFFEGNLAI 335

[Close]

BLAST of MELO3C020247.2 vs. TrEMBL
Match: tr|A0A0A0LH82|A0A0A0LH82_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G055060 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.8e-07
Identity = 35/83 (42.17%), Postives = 46/83 (55.42%), Query Frame = 0


Query: 41  FIPATIKIKDKNGHSFIVHIVTICSGKWLAERDVKINSSFKRQVAIEFDNFNSEAKQFTF 100
           F+PA I+I D  G+SF + IV+   GKWL ER+V+ +  FK Q    F  FN  AKQFTF
Sbjct: 8   FVPAYIRITDDLGNSFPIQIVSHTQGKWLVERNVRKHGIFKSQATTSFGEFNPNAKQFTF 67

Query: 101 SVNLAILADEFEIPKNKSLMAEL 124
             +  +        KNK L  E+
Sbjct: 68  IGSEGLPPKHPTSSKNKVLNDEI 90

The following BLAST results are available for this feature:

BLAST of MELO3C020247.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN33672.1	1.1e-14	40.57	hypothetical protein [Cucumis melo subsp. melo]	[more]
KGN61118.1	8.7e-07	42.17	hypothetical protein Csa_2G055060 [Cucumis sativus]	[more]

BLAST of MELO3C020247.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C020247.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C020247.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GB30\|E5GB30_CUCME	7.5e-15	40.57	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A0A0LH82\|A0A0A0LH82_CUCSA	5.8e-07	42.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G055060 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020247.2.1	MELO3C020247.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 297..327
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 308..327

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020247.2	Cucumber (Gy14) v2	cgybmedB216
MELO3C020247.2	Cucumber (Gy14) v1	cgymedB606
MELO3C020247.2	Cucurbita maxima (Rimu)	cmamedB274
MELO3C020247.2	Cucurbita maxima (Rimu)	cmamedB496
MELO3C020247.2	Cucurbita moschata (Rifu)	cmomedB261
MELO3C020247.2	Cucurbita moschata (Rifu)	cmomedB483
MELO3C020247.2	Cucurbita pepo (Zucchini)	cpemedB630
MELO3C020247.2	Cucurbita pepo (Zucchini)	cpemedB694
MELO3C020247.2	Wild cucumber (PI 183967)	cpimedB240
MELO3C020247.2	Cucumber (Chinese Long) v2	cumedB239
MELO3C020247.2	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C020247.2	Watermelon (Charleston Gray)	medwcgB417
MELO3C020247.2	Watermelon (97103) v1	medwmB448
MELO3C020247.2	Silver-seed gourd	carmedB0521
MELO3C020247.2	Silver-seed gourd	carmedB0771
MELO3C020247.2	Cucumber (Chinese Long) v3	cucmedB247
MELO3C020247.2	Watermelon (97103) v2	medwmbB424
MELO3C020247.2	Wax gourd	medwgoB546