MELO3C020247 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C020247
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description50S ribosomal protein L2
Locationchr6 : 14648550 .. 14649756 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATACTTTCCTTCAAACTGGTAACGCATGTGAAAGACTGTTGGAAGTCGACAAAGCTATAATGAATATAGAAAACCTCCTTGAAGCCAAAATTAACGTAAGGTACAACTACTGTAGTTTCATTCCAGCCACCATTAAAATCAAAGACAAAAATGGCCATTCTTTCATTGTTCACATAGTCACAATATGCTCGGGTAAGTGGTTAGCAGAACGTGATGTTAAAATAAACAGTTCTTTCAAGAGACAGGTAGCCATTGAATTTGACAATTTCAACTCAGAAGCTAAGCAATTCACCTTTTCTGTCAATTTGGCAATTCTGGCCGACGAGTTTGAAATCCCAAAAAACAAATCATTAATGGCAGAGTTGACATTGGAAGGAAATCCCACACATGCCAAGGAAATTAATGACAAGGATCTTCGAAAATCTGGTATAAAAAACTCTAAGAGGCTTAAATTAGTAGAAAGTGGATGGAAAAAAGAGTCGTAATTACAACTAGCAATGATGAGATGAGCTCACACCGTGAGCATTCATTCGAAGATATTAATGAGATGGATAACGTTTCTGCTAGATTCGGAGGAAAGAGAAAAGTCTTCTTTTTATCACCAAAAAAAAAAATAAAACCATCTTCTTCAATACTAATCACGCTTCAGCAATACAAACTGAAAATGCTGAGTCATCAAGAAAATTCAACAGCAATGATGAACCAAAGCAAAGAAAGAAACCAGGAAAAAAAAGGAATACAGGCCTAAAGCCCACTATTCCTAGCCTAATTGTAAAACCAACCCAATCGAACCCTCTTGATGACCAACACAAAGAAGGTGATCTTACTATTGATCTGGGCCACCTATCTATTATAAACCCACAACTTCATATTCAATTTGAAGACCACTCGGACTCCAGACCAGATATTGTCAAGGCAACACAAGACACAGATCATCAAAAGCATAAGGCACAAATTGCAAATATAAAAGATCCTCAAGAAAATGTTTTGCCGAAAACTTCTCCTGAGGATGACATAATGATCAAAGAAGAAGAAGATGATTTCAAGGTCAAACTAATCCAGTGGCTTAAAGAAAACAACCTGAAATTGGCTACCACAATAAATGATCCTGCTCAACAGAAGGTCGCAAAAACTGCTTCTGATCAGGTTGGAATTGAGGATGAACGGGTTAAAGAAAATGAGGGAAATAAGTCCTTCAAATGA

mRNA sequence

ATGGATACTTTCCTTCAAACTGGTAACGCATGTGAAAGACTGTTGGAAGTCGACAAAGCTATAATGAATATAGAAAACCTCCTTGAAGCCAAAATTAACGTAAGGTACAACTACTGTAGTTTCATTCCAGCCACCATTAAAATCAAAGACAAAAATGGCCATTCTTTCATTGTTCACATAGTCACAATATGCTCGGGTAAGTGGTTAGCAGAACGTGATGTTAAAATAAACAGTTCTTTCAAGAGACAGGTAGCCATTGAATTTGACAATTTCAACTCAGAAGCTAAGCAATTCACCTTTTCTGTCAATTTGGCAATTCTGGCCGACGAGTTTGAAATCCCAAAAAACAAATCATTAATGGCAGAGTTGACATTGGAAGGAAATCCCACACATGCCAAGGAAATTAATGACAAGGATCTTCGAAAATCTGCAATACAAACTGAAAATGCTGAGTCATCAAGAAAATTCAACAGCAATGATGAACCAAAGCAAAGAAAGAAACCAGGAAAAAAAAGGAATACAGGCCTAAAGCCCACTATTCCTAGCCTAATTGTAAAACCAACCCAATCGAACCCTCTTGATGACCAACACAAAGAAGGTGATCTTACTATTGATCTGGGCCACCTATCTATTATAAACCCACAACTTCATATTCAATTTGAAGACCACTCGGACTCCAGACCAGATATTGTCAAGGCAACACAAGACACAGATCATCAAAAGCATAAGGCACAAATTGCAAATATAAAAGATCCTCAAGAAAATGTTTTGCCGAAAACTTCTCCTGAGGATGACATAATGATCAAAGAAGAAGAAGATGATTTCAAGGTCAAACTAATCCAGTGGCTTAAAGAAAACAACCTGAAATTGGCTACCACAATAAATGATCCTGCTCAACAGAAGGTCGCAAAAACTGCTTCTGATCAGGTTGGAATTGAGGATGAACGGGTTAAAGAAAATGAGGGAAATAAGTCCTTCAAATGA

Coding sequence (CDS)

ATGGATACTTTCCTTCAAACTGGTAACGCATGTGAAAGACTGTTGGAAGTCGACAAAGCTATAATGAATATAGAAAACCTCCTTGAAGCCAAAATTAACGTAAGGTACAACTACTGTAGTTTCATTCCAGCCACCATTAAAATCAAAGACAAAAATGGCCATTCTTTCATTGTTCACATAGTCACAATATGCTCGGGTAAGTGGTTAGCAGAACGTGATGTTAAAATAAACAGTTCTTTCAAGAGACAGGTAGCCATTGAATTTGACAATTTCAACTCAGAAGCTAAGCAATTCACCTTTTCTGTCAATTTGGCAATTCTGGCCGACGAGTTTGAAATCCCAAAAAACAAATCATTAATGGCAGAGTTGACATTGGAAGGAAATCCCACACATGCCAAGGAAATTAATGACAAGGATCTTCGAAAATCTGCAATACAAACTGAAAATGCTGAGTCATCAAGAAAATTCAACAGCAATGATGAACCAAAGCAAAGAAAGAAACCAGGAAAAAAAAGGAATACAGGCCTAAAGCCCACTATTCCTAGCCTAATTGTAAAACCAACCCAATCGAACCCTCTTGATGACCAACACAAAGAAGGTGATCTTACTATTGATCTGGGCCACCTATCTATTATAAACCCACAACTTCATATTCAATTTGAAGACCACTCGGACTCCAGACCAGATATTGTCAAGGCAACACAAGACACAGATCATCAAAAGCATAAGGCACAAATTGCAAATATAAAAGATCCTCAAGAAAATGTTTTGCCGAAAACTTCTCCTGAGGATGACATAATGATCAAAGAAGAAGAAGATGATTTCAAGGTCAAACTAATCCAGTGGCTTAAAGAAAACAACCTGAAATTGGCTACCACAATAAATGATCCTGCTCAACAGAAGGTCGCAAAAACTGCTTCTGATCAGGTTGGAATTGAGGATGAACGGGTTAAAGAAAATGAGGGAAATAAGTCCTTCAAATGA

Protein sequence

MDTFLQTGNACERLLEVDKAIMNIENLLEAKINVRYNYCSFIPATIKIKDKNGHSFIVHIVTICSGKWLAERDVKINSSFKRQVAIEFDNFNSEAKQFTFSVNLAILADEFEIPKNKSLMAELTLEGNPTHAKEINDKDLRKSAIQTENAESSRKFNSNDEPKQRKKPGKKRNTGLKPTIPSLIVKPTQSNPLDDQHKEGDLTIDLGHLSIINPQLHIQFEDHSDSRPDIVKATQDTDHQKHKAQIANIKDPQENVLPKTSPEDDIMIKEEEDDFKVKLIQWLKENNLKLATTINDPAQQKVAKTASDQVGIEDERVKENEGNKSFK*
Homology
[Close]
BLAST of MELO3C020247 vs. TrEMBL
Match: E5GB30_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.0e-15
Identity = 43/106 (40.57%), Postives = 65/106 (61.32%), Query Frame = 1 

Query: 1   MDTFLQTGNACERLLEVDKAIMNIENLLEAKINVRYNYCSFIPATIKIKDKNGHSFIVHI 60
           +++F+Q G+AC   +EV K    + +L+EA I V+ NY  FIPA IK+ DK   S+I+ +
Sbjct: 230 LESFVQIGDACGGFMEVAKETRELTDLIEASIRVKDNYSGFIPAFIKLIDKEERSYIIQV 289

Query: 61  VTICSGKWLAERDVKINSSFKRQVAIEFDNFNSEAKQFTFSVNLAI 107
           +    GKW   R+  I+ +F R+ A  FD FN  ++Q+ F  NLAI
Sbjct: 290 IVKTEGKWHLGRNPSIHGTFTREAARRFDEFNLNSEQYFFEGNLAI 335

[Close]
BLAST of MELO3C020247 vs. TrEMBL
Match: A0A0A0LH82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G055060 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.1e-07
Identity = 35/83 (42.17%), Postives = 46/83 (55.42%), Query Frame = 1 

Query: 41  FIPATIKIKDKNGHSFIVHIVTICSGKWLAERDVKINSSFKRQVAIEFDNFNSEAKQFTF 100
           F+PA I+I D  G+SF + IV+   GKWL ER+V+ +  FK Q    F  FN  AKQFTF
Sbjct: 8   FVPAYIRITDDLGNSFPIQIVSHTQGKWLVERNVRKHGIFKSQATTSFGEFNPNAKQFTF 67

Query: 101 SVNLAILADEFEIPKNKSLMAEL 124
             +  +        KNK L  E+
Sbjct: 68  IGSEGLPPKHPTSSKNKVLNDEI 90

[Close]
BLAST of MELO3C020247 vs. NCBI nr
Match: gi|659071590|ref|XP_008460776.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 7.9e-20
Identity = 51/109 (46.79%), Postives = 71/109 (65.14%), Query Frame = 1 

Query: 1   MDTFLQTGNACERLLEVDKAIMNIENLLEAKINVRYNYCSFIPATIKIKDKNGHSFIVHI 60
           M TF Q G AC  L++V +   + +NL+EAKI +RYNY  F+PA ++I D  G+ F + +
Sbjct: 303 MKTFQQIGKACGGLIKVAEETRSAKNLIEAKIKIRYNYSGFLPANVRIFDNEGNKFSIQV 362

Query: 61  VTICSGKWLAERDVKINSSFKRQVAIEFDNFNSEAKQFTFSVNLAILAD 110
           VT   GKWL ER+V+++ +FKRQ A  FD FN E++QF F    AI  D
Sbjct: 363 VTHPEGKWLIERNVRLHGTFKRQAAAAFDEFNPESEQFFFEGMEAISPD 411

[Close]
BLAST of MELO3C020247 vs. NCBI nr
Match: gi|307135793|gb|ADN33672.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 89.7 bits (221), Expect = 1.0e-14
Identity = 43/106 (40.57%), Postives = 65/106 (61.32%), Query Frame = 1 

Query: 1   MDTFLQTGNACERLLEVDKAIMNIENLLEAKINVRYNYCSFIPATIKIKDKNGHSFIVHI 60
           +++F+Q G+AC   +EV K    + +L+EA I V+ NY  FIPA IK+ DK   S+I+ +
Sbjct: 230 LESFVQIGDACGGFMEVAKETRELTDLIEASIRVKDNYSGFIPAFIKLIDKEERSYIIQV 289

Query: 61  VTICSGKWLAERDVKINSSFKRQVAIEFDNFNSEAKQFTFSVNLAI 107
           +    GKW   R+  I+ +F R+ A  FD FN  ++Q+ F  NLAI
Sbjct: 290 IVKTEGKWHLGRNPSIHGTFTREAARRFDEFNLNSEQYFFEGNLAI 335

[Close]
BLAST of MELO3C020247 vs. NCBI nr
Match: gi|700205999|gb|KGN61118.1| (hypothetical protein Csa_2G055060 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 5.9e-07
Identity = 35/83 (42.17%), Postives = 46/83 (55.42%), Query Frame = 1 

Query: 41  FIPATIKIKDKNGHSFIVHIVTICSGKWLAERDVKINSSFKRQVAIEFDNFNSEAKQFTF 100
           F+PA I+I D  G+SF + IV+   GKWL ER+V+ +  FK Q    F  FN  AKQFTF
Sbjct: 8   FVPAYIRITDDLGNSFPIQIVSHTQGKWLVERNVRKHGIFKSQATTSFGEFNPNAKQFTF 67

Query: 101 SVNLAILADEFEIPKNKSLMAEL 124
             +  +        KNK L  E+
Sbjct: 68  IGSEGLPPKHPTSSKNKVLNDEI 90

The following BLAST results are available for this feature:
BLAST of MELO3C020247 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GB30_CUCME7.0e-1540.57Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0LH82_CUCSA4.1e-0742.17Uncharacterized protein OS=Cucumis sativus GN=Csa_2G055060 PE=4 SV=1[more]
BLAST of MELO3C020247 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659071590|ref|XP_008460776.1|7.9e-2046.79PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis me... [more]
gi|307135793|gb|ADN33672.1|1.0e-1440.57hypothetical protein [Cucumis melo subsp. melo][more]
gi|700205999|gb|KGN61118.1|5.9e-0742.17hypothetical protein Csa_2G055060 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020247T1MELO3C020247T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C020247Watermelon (97103) v2mewmbB434
MELO3C020247Wax gourdmewgoB542
MELO3C020247Cucumber (Gy14) v1cgymeB609
MELO3C020247Cucurbita maxima (Rimu)cmameB243
MELO3C020247Cucurbita maxima (Rimu)cmameB431
MELO3C020247Cucurbita moschata (Rifu)cmomeB231
MELO3C020247Cucurbita moschata (Rifu)cmomeB421
MELO3C020247Wild cucumber (PI 183967)cpimeB243
MELO3C020247Cucumber (Chinese Long) v2cumeB246
MELO3C020247Watermelon (Charleston Gray)mewcgB427
MELO3C020247Watermelon (97103) v1mewmB461
MELO3C020247Cucurbita pepo (Zucchini)cpemeB529
MELO3C020247Cucurbita pepo (Zucchini)cpemeB586
MELO3C020247Bottle gourd (USVL1VR-Ls)lsimeB368
MELO3C020247Cucumber (Gy14) v2cgybmeB212
MELO3C020247Silver-seed gourdcarmeB0515
MELO3C020247Silver-seed gourdcarmeB0756
MELO3C020247Cucumber (Chinese Long) v3cucmeB249