MELO3C020246.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C020246.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionmediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr06 : 15743601 .. 15744361 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATAGTTCCAATGGTGACTGACAACACCAAATTGTACACCAAATTGTACACGGTATTCAACAAGCTGTTCCACGTGACTGTAATACTGAACCACTGTTGCACAACATTGACCTGAGGACTGCTGATTGGTCAGATAGAGTTGCTCATTTAGTGATGCGATGGCATAATCGCAGAAGGTTTACTGCTACGGGACCTCCAATTGAGCAGTTTGATATGGATGTAACTCAAGAATACACCCATTGGTACAAAAACATTAGCAAGCTCTATATCACCCAACTGGGAGCTGCTATGAGTCATCTGGTATACATTTAAAAATTGTATATTTGTTTTTAGTGTTAATTTATTTTCAATGATTTCTAATTCATTTTAATATTTTACAGAGATCAAACAATATTAGACTTCGGAATGTTGCAGATGATCCACAACAGGTTCTAAATATATGCAACGATAACGAGCAGTACATGGAGAACATCCACTATATGTACGATGTCCCTATTGTACCTGCTCCAGTTCAGAGGAGACGTCCTCTAGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGGGGAAGAAGTGCCTCCAATGACAGAGACACAAAGCGAACATAATTACGTTAGTCCAGTAATGATGATGCCAACATTTGAAACGACATATTATGATTCAGGAGTCGGTCAATCGTTAGACTTTGGAAGAGGATATTACAATTCAGAGGCAGGTCAATCATCAACGGACTTTGGGCAACAATACTATGATTAG

mRNA sequence

TATAGTTCCAATGGTGACTGACAACACCAAATTGTACACCAAATTGTACACGGTATTCAACAAGCTGTTCCACGTGACTGTAATACTGAACCACTGTTGCACAACATTGACCTGAGGACTGCTGATTGGTCAGATAGAGTTGCTCATTTAGTGATGCGATGGCATAATCGCAGAAGGTTTACTGCTACGGGACCTCCAATTGAGCAGTTTGATATGGATGTAACTCAAGAATACACCCATTGGTACAAAAACATTAGCAAGCTCTATATCACCCAACTGGGAGCTGCTATGAGTCATCTGAGATCAAACAATATTAGACTTCGGAATGTTGCAGATGATCCACAACAGGTTCTAAATATATGCAACGATAACGAGCAGTACATGGAGAACATCCACTATATGTACGATGTCCCTATTGTACCTGCTCCAGTTCAGAGGAGACGTCCTCTAGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGGGGAAGAAGTGCCTCCAATGACAGAGACACAAAGCGAACATAATTACGTTAGTCCAGTAATGATGATGCCAACATTTGAAACGACATATTATGATTCAGGAGTCGGTCAATCGTTAGACTTTGGAAGAGGATATTACAATTCAGAGGCAGGTCAATCATCAACGGACTTTGGGCAACAATACTATGATTAG

Coding sequence (CDS)

ATGCGATGGCATAATCGCAGAAGGTTTACTGCTACGGGACCTCCAATTGAGCAGTTTGATATGGATGTAACTCAAGAATACACCCATTGGTACAAAAACATTAGCAAGCTCTATATCACCCAACTGGGAGCTGCTATGAGTCATCTGAGATCAAACAATATTAGACTTCGGAATGTTGCAGATGATCCACAACAGGTTCTAAATATATGCAACGATAACGAGCAGTACATGGAGAACATCCACTATATGTACGATGTCCCTATTGTACCTGCTCCAGTTCAGAGGAGACGTCCTCTAGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGGGGAAGAAGTGCCTCCAATGACAGAGACACAAAGCGAACATAATTACGTTAGTCCAGTAATGATGATGCCAACATTTGAAACGACATATTATGATTCAGGAGTCGGTCAATCGTTAGACTTTGGAAGAGGATATTACAATTCAGAGGCAGGTCAATCATCAACGGACTTTGGGCAACAATACTATGATTAG

Protein sequence

MRWHNRRRFTATGPPIEQFDMDVTQEYTHWYKNISKLYITQLGAAMSHLRSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTETQSEHNYVSPVMMMPTFETTYYDSGVGQSLDFGRGYYNSEAGQSSTDFGQQYYD
Homology
[Close]
BLAST of MELO3C020246.2 vs. NCBI nr
Match: XP_008449513.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo])

HSP 1 Score: 255.0 bits (650), Expect = 1.9e-64
Identity = 124/132 (93.94%), Postives = 126/132 (95.45%), Query Frame = 0 

Query: 1   MRWHNRRRFTATGPPIEQFDMDVTQEYTHWYKNISKLYITQLGAAMSHLRSNNIRLRNVA 60
           MRWHNRRRFTATGPPIEQFDMDVTQEY HWYKNISKLYITQ GAAMSHLRSNN RLRN+A
Sbjct: 1   MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIA 60

Query: 61  DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPM- 120
           DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQE DQLEEVDQHGEEVPPM 
Sbjct: 61  DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMT 120

Query: 121 -TETQSEHNYVS 131
            T+TQSEHNYVS
Sbjct: 121 QTQTQSEHNYVS 132

[Close]
BLAST of MELO3C020246.2 vs. NCBI nr
Match: XP_016900498.1 (PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo])

HSP 1 Score: 209.9 bits (533), Expect = 6.9e-51
Identity = 104/112 (92.86%), Postives = 106/112 (94.64%), Query Frame = 0 

Query: 21  MDVTQEYTHWYKNISKLYITQLGAAMSHLRSNNIRLRNVADDPQQVLNICNDNEQYMENI 80
           MDVTQEY HWYKNISKLYITQ GAAMSHLRSNN RLRN+ADDPQQVLNICNDNEQYMENI
Sbjct: 1   MDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIADDPQQVLNICNDNEQYMENI 60

Query: 81  HYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPM--TETQSEHNYVS 131
           HYMYDVPIVPAPVQRRRPLVQE DQLEEVDQHGEEVPPM  T+TQSEHNYVS
Sbjct: 61  HYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVS 112

[Close]
BLAST of MELO3C020246.2 vs. NCBI nr
Match: XP_008463092.1 (PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo])

HSP 1 Score: 152.5 bits (384), Expect = 1.3e-33
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0 

Query: 1   MRWHNRRRFTATGPPIEQFDMDVTQEYTHWYKNISKLYITQLGAAMSHLRSNNIRLRNVA 60
           MRWHNRRRFTATGPPIEQFDMDVTQEY +WYKNISKLYITQ GAAMSHLRSNNIRLRNVA
Sbjct: 92  MRWHNRRRFTATGPPIEQFDMDVTQEYINWYKNISKLYITQPGAAMSHLRSNNIRLRNVA 151

Query: 61  DDPQQVLNICNDNE 75
           DDPQQVLNICNDNE
Sbjct: 152 DDPQQVLNICNDNE 165

[Close]
BLAST of MELO3C020246.2 vs. NCBI nr
Match: XP_008461670.1 (PREDICTED: CASP-like protein 4C1 isoform X1 [Cucumis melo])

HSP 1 Score: 114.8 bits (286), Expect = 3.0e-22
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 50  RSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEV 109
           RS NIRL+NVADDPQQVLNICNDNEQYMENIHYMY+V IVPA VQRRRPLVQE +QLEEV
Sbjct: 162 RSKNIRLQNVADDPQQVLNICNDNEQYMENIHYMYNVLIVPALVQRRRPLVQESNQLEEV 221

Query: 110 DQHGEEVP 118
            QH EEVP
Sbjct: 222 VQHVEEVP 229

[Close]
BLAST of MELO3C020246.2 vs. NCBI nr
Match: XP_008461671.1 (PREDICTED: CASP-like protein 4C1 isoform X2 [Cucumis melo])

HSP 1 Score: 114.8 bits (286), Expect = 3.0e-22
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 50  RSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEV 109
           RS NIRL+NVADDPQQVLNICNDNEQYMENIHYMY+V IVPA VQRRRPLVQE +QLEEV
Sbjct: 155 RSKNIRLQNVADDPQQVLNICNDNEQYMENIHYMYNVLIVPALVQRRRPLVQESNQLEEV 214

Query: 110 DQHGEEVP 118
            QH EEVP
Sbjct: 215 VQHVEEVP 222

[Close]
BLAST of MELO3C020246.2 vs. TrEMBL
Match: tr|A0A1S3BLK4|A0A1S3BLK4_CUCME (mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.2e-64
Identity = 124/132 (93.94%), Postives = 126/132 (95.45%), Query Frame = 0 

Query: 1   MRWHNRRRFTATGPPIEQFDMDVTQEYTHWYKNISKLYITQLGAAMSHLRSNNIRLRNVA 60
           MRWHNRRRFTATGPPIEQFDMDVTQEY HWYKNISKLYITQ GAAMSHLRSNN RLRN+A
Sbjct: 1   MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIA 60

Query: 61  DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPM- 120
           DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQE DQLEEVDQHGEEVPPM 
Sbjct: 61  DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMT 120

Query: 121 -TETQSEHNYVS 131
            T+TQSEHNYVS
Sbjct: 121 QTQTQSEHNYVS 132

[Close]
BLAST of MELO3C020246.2 vs. TrEMBL
Match: tr|A0A1S4DWZ9|A0A1S4DWZ9_CUCME (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 4.6e-51
Identity = 104/112 (92.86%), Postives = 106/112 (94.64%), Query Frame = 0 

Query: 21  MDVTQEYTHWYKNISKLYITQLGAAMSHLRSNNIRLRNVADDPQQVLNICNDNEQYMENI 80
           MDVTQEY HWYKNISKLYITQ GAAMSHLRSNN RLRN+ADDPQQVLNICNDNEQYMENI
Sbjct: 1   MDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIADDPQQVLNICNDNEQYMENI 60

Query: 81  HYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPM--TETQSEHNYVS 131
           HYMYDVPIVPAPVQRRRPLVQE DQLEEVDQHGEEVPPM  T+TQSEHNYVS
Sbjct: 61  HYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVS 112

[Close]
BLAST of MELO3C020246.2 vs. TrEMBL
Match: tr|A0A1S3CIU3|A0A1S3CIU3_CUCME (serine/threonine-protein phosphatase 7 long form homolog OS=Cucumis melo OX=3656 GN=LOC103501325 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 8.6e-34
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0 

Query: 1   MRWHNRRRFTATGPPIEQFDMDVTQEYTHWYKNISKLYITQLGAAMSHLRSNNIRLRNVA 60
           MRWHNRRRFTATGPPIEQFDMDVTQEY +WYKNISKLYITQ GAAMSHLRSNNIRLRNVA
Sbjct: 92  MRWHNRRRFTATGPPIEQFDMDVTQEYINWYKNISKLYITQPGAAMSHLRSNNIRLRNVA 151

Query: 61  DDPQQVLNICNDNE 75
           DDPQQVLNICNDNE
Sbjct: 152 DDPQQVLNICNDNE 165

[Close]
BLAST of MELO3C020246.2 vs. TrEMBL
Match: tr|A0A1S3CF98|A0A1S3CF98_CUCME (CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500218 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.0e-22
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 50  RSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEV 109
           RS NIRL+NVADDPQQVLNICNDNEQYMENIHYMY+V IVPA VQRRRPLVQE +QLEEV
Sbjct: 155 RSKNIRLQNVADDPQQVLNICNDNEQYMENIHYMYNVLIVPALVQRRRPLVQESNQLEEV 214

Query: 110 DQHGEEVP 118
            QH EEVP
Sbjct: 215 VQHVEEVP 222

[Close]
BLAST of MELO3C020246.2 vs. TrEMBL
Match: tr|A0A1S3CF42|A0A1S3CF42_CUCME (CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500218 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.0e-22
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 50  RSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEV 109
           RS NIRL+NVADDPQQVLNICNDNEQYMENIHYMY+V IVPA VQRRRPLVQE +QLEEV
Sbjct: 162 RSKNIRLQNVADDPQQVLNICNDNEQYMENIHYMYNVLIVPALVQRRRPLVQESNQLEEV 221

Query: 110 DQHGEEVP 118
            QH EEVP
Sbjct: 222 VQHVEEVP 229

The following BLAST results are available for this feature:
BLAST of MELO3C020246.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008449513.11.9e-6493.94PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X... [more]
XP_016900498.16.9e-5192.86PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumi... [more]
XP_008463092.11.3e-3395.95PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis mel... [more]
XP_008461670.13.0e-2286.76PREDICTED: CASP-like protein 4C1 isoform X1 [Cucumis melo][more]
XP_008461671.13.0e-2286.76PREDICTED: CASP-like protein 4C1 isoform X2 [Cucumis melo][more]
BLAST of MELO3C020246.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C020246.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C020246.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BLK4|A0A1S3BLK4_CUCME1.2e-6493.94mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
tr|A0A1S4DWZ9|A0A1S4DWZ9_CUCME4.6e-5192.86GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX... [more]
tr|A0A1S3CIU3|A0A1S3CIU3_CUCME8.6e-3495.95serine/threonine-protein phosphatase 7 long form homolog OS=Cucumis melo OX=3656... [more]
tr|A0A1S3CF98|A0A1S3CF98_CUCME2.0e-2286.76CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500218 PE=3 SV=1[more]
tr|A0A1S3CF42|A0A1S3CF42_CUCME2.0e-2286.76CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500218 PE=3 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020246.2.1MELO3C020246.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C020246.2Watermelon (97103) v2medwmbB424
MELO3C020246.2Wax gourdmedwgoB546
MELO3C020246.2Cucumber (Gy14) v2cgybmedB216
MELO3C020246.2Cucumber (Gy14) v1cgymedB606
MELO3C020246.2Cucurbita maxima (Rimu)cmamedB274
MELO3C020246.2Cucurbita maxima (Rimu)cmamedB496
MELO3C020246.2Cucurbita moschata (Rifu)cmomedB261
MELO3C020246.2Cucurbita moschata (Rifu)cmomedB483
MELO3C020246.2Cucurbita pepo (Zucchini)cpemedB630
MELO3C020246.2Cucurbita pepo (Zucchini)cpemedB694
MELO3C020246.2Wild cucumber (PI 183967)cpimedB240
MELO3C020246.2Cucumber (Chinese Long) v2cumedB239
MELO3C020246.2Bottle gourd (USVL1VR-Ls)lsimedB384
MELO3C020246.2Watermelon (Charleston Gray)medwcgB417
MELO3C020246.2Watermelon (97103) v1medwmB448
MELO3C020246.2Silver-seed gourdcarmedB0521
MELO3C020246.2Silver-seed gourdcarmedB0771
MELO3C020246.2Cucumber (Chinese Long) v3cucmedB247