MELO3C020246 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020246
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Location	chr6 : 14666249 .. 14667087 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTGCTCATTTAGTGATGCGATGGCATAATCGCAGAAGGTTTACTGCTACGGGACCTCCAATTGAGCAGTTTGATATGGATGTAACTCAAGAATACACCCATTGGTACAAAAACATTAGCAAGCTCTATATCACCCAACTGGGAGCTGCTATGAGTCATCTGGTATACATTTAAAAATTGTATATTTGTTTTTAGTGTTAATTTATTTTCAATGATTTCTAATTCATTTTAATATTTTACAGAGATCAAACAATATTAGACTTCGGAATGTTGCAGATGATCCACAACAGGTTCTAAATATATGCAACGATAACGAGCAGTACATGGAGAACATCCACTATATGTACGATGTCCCTATTGTACCTGCTCCAGTTCAGAGGAGACGTCCTCTAGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGGGGAAGAAGTGCCTCCAATGACAGAGACACAAAGCGAACATAATTACGTTAGTCCAGTAATGATGATGCCAACATTTGAAACGACATATTATGATTCAGGAGTCGGTCAATCGTTAGACTTTGGAAGAGGATATTACAATTCAGAGGCAGGTCAATCATCAACGGACTTTGGGCAACAATACTATGATTTTTTTTAGGGAGCGATCCATCGTCTTCATACATGCATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGGTACTTGAACAATCAGATGAGCTACAACAACAAGAGAATGCAGCAGTACCCGAGCAATTAGATGAGCAACAACAACAAGAGAATCAGGAGGAAATACAACATCAGAGAGTTCAAAGTTGA

mRNA sequence

AGTTGCTCATTTAGTGATGCGATGGCATAATCGCAGAAGGTTTACTGCTACGGGACCTCCAATTGAGCAGTTTGATATGGATGTAACTCAAGAATACACCCATTGGTACAAAAACATTAGCAAGCTCTATATCACCCAACTGGGAGCTGCTATGAGTCATCTGAGATCAAACAATATTAGACTTCGGAATGTTGCAGATGATCCACAACAGGTTCTAAATATATGCAACGATAACGAGCAGTACATGGAGAACATCCACTATATGTACGATGTCCCTATTGTACCTGCTCCAGTTCAGAGGAGACGTCCTCTAGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGGGGAAGAAGTGCCTCCAATGACAGAGACACAAAGCGAACATAATTACGTTAGTCCAGTAATGATGATGCCAACATTTGAAACGACATATTATGATTCAGGAGTCGGTCAATCGTTAGACTTTGGAAGAGGATATTACAATTCAGAGGCAGGGAGCGATCCATCGTCTTCATACATGCATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGGTACTTGAACAATCAGATGAGCTACAACAACAAGAGAATGCAGCAGTACCCGAGCAATTAGATGAGCAACAACAACAAGAGAATCAGGAGGAAATACAACATCAGAGAGTTCAAAGTTGA

Coding sequence (CDS)

ATGCGATGGCATAATCGCAGAAGGTTTACTGCTACGGGACCTCCAATTGAGCAGTTTGATATGGATGTAACTCAAGAATACACCCATTGGTACAAAAACATTAGCAAGCTCTATATCACCCAACTGGGAGCTGCTATGAGTCATCTGAGATCAAACAATATTAGACTTCGGAATGTTGCAGATGATCCACAACAGGTTCTAAATATATGCAACGATAACGAGCAGTACATGGAGAACATCCACTATATGTACGATGTCCCTATTGTACCTGCTCCAGTTCAGAGGAGACGTCCTCTAGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGGGGAAGAAGTGCCTCCAATGACAGAGACACAAAGCGAACATAATTACGTTAGTCCAGTAATGATGATGCCAACATTTGAAACGACATATTATGATTCAGGAGTCGGTCAATCGTTAGACTTTGGAAGAGGATATTACAATTCAGAGGCAGGGAGCGATCCATCGTCTTCATACATGCATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGGTACTTGAACAATCAGATGAGCTACAACAACAAGAGAATGCAGCAGTACCCGAGCAATTAGATGAGCAACAACAACAAGAGAATCAGGAGGAAATACAACATCAGAGAGTTCAAAGTTGA

Protein sequence

MRWHNRRRFTATGPPIEQFDMDVTQEYTHWYKNISKLYITQLGAAMSHLRSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTETQSEHNYVSPVMMMPTFETTYYDSGVGQSLDFGRGYYNSEAGSDPSSSYMHGHGRGRGEHNEYLYYEVPAAVLEQSDELQQQENAAVPEQLDEQQQQENQEEIQHQRVQS*

Homology

[Close]

BLAST of MELO3C020246 vs. NCBI nr
Match: gi|659069376|ref|XP_008449513.1| (PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo])

HSP 1 Score: 434.9 bits (1117), Expect = 9.0e-119
Identity = 215/246 (87.40%), Postives = 218/246 (88.62%), Query Frame = 1


Query: 1   MRWHNRRRFTATGPPIEQFDMDVTQEYTHWYKNISKLYITQLGAAMSHLRSNNIRLRNVA 60
           MRWHNRRRFTATGPPIEQFDMDVTQEY HWYKNISKLYITQ GAAMSHLRSNN RLRN+A
Sbjct: 1   MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIA 60

Query: 61  DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPM- 120
           DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQE DQLEEVDQHGEEVPPM 
Sbjct: 61  DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMT 120

Query: 121 -TETQSEHNYVSPVMMMPTFETTYYDSGVGQSLDFGRGYYNSEA--------------GS 180
            T+TQSEHNYVSPVMMMPTF  TYYDSGVGQS DFGRGYYNSEA              GS
Sbjct: 121 QTQTQSEHNYVSPVMMMPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGS 180

Query: 181 DPSSSYMHGHGRGRGEHNEYLYYEVPAAVLEQSDELQQQENAAVPEQLDEQQQQENQEEI 231
           DPSSSYMHGHGRGRGEHNEYLYY+VPAAV EQSDE QQQENAAVPEQ DEQQQQEN EEI
Sbjct: 181 DPSSSYMHGHGRGRGEHNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEI 240

[Close]

BLAST of MELO3C020246 vs. NCBI nr
Match: gi|659126257|ref|XP_008463092.1| (PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo])

HSP 1 Score: 152.5 bits (384), Expect = 8.9e-34
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 1


Query: 1   MRWHNRRRFTATGPPIEQFDMDVTQEYTHWYKNISKLYITQLGAAMSHLRSNNIRLRNVA 60
           MRWHNRRRFTATGPPIEQFDMDVTQEY +WYKNISKLYITQ GAAMSHLRSNNIRLRNVA
Sbjct: 92  MRWHNRRRFTATGPPIEQFDMDVTQEYINWYKNISKLYITQPGAAMSHLRSNNIRLRNVA 151

Query: 61  DDPQQVLNICNDNE 75
           DDPQQVLNICNDNE
Sbjct: 152 DDPQQVLNICNDNE 165

[Close]

BLAST of MELO3C020246 vs. NCBI nr
Match: gi|659123452|ref|XP_008461671.1| (PREDICTED: CASP-like protein RCOM_0464280 isoform X2 [Cucumis melo])

HSP 1 Score: 119.8 bits (299), Expect = 6.4e-24
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = 1


Query: 50  RSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEV 109
           RS NIRL+NVADDPQQVLNICNDNEQYMENIHYMY+V IVPA VQRRRPLVQE +QLEEV
Sbjct: 155 RSKNIRLQNVADDPQQVLNICNDNEQYMENIHYMYNVLIVPALVQRRRPLVQESNQLEEV 214

Query: 110 DQHGEEVP 118
            QH EEVP
Sbjct: 215 VQHVEEVP 222

[Close]

BLAST of MELO3C020246 vs. NCBI nr
Match: gi|659123450|ref|XP_008461670.1| (PREDICTED: CASP-like protein RCOM_0464280 isoform X1 [Cucumis melo])

HSP 1 Score: 119.8 bits (299), Expect = 6.4e-24
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = 1


Query: 50  RSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEV 109
           RS NIRL+NVADDPQQVLNICNDNEQYMENIHYMY+V IVPA VQRRRPLVQE +QLEEV
Sbjct: 162 RSKNIRLQNVADDPQQVLNICNDNEQYMENIHYMYNVLIVPALVQRRRPLVQESNQLEEV 221

Query: 110 DQHGEEVP 118
            QH EEVP
Sbjct: 222 VQHVEEVP 229

[Close]

BLAST of MELO3C020246 vs. NCBI nr
Match: gi|778688386|ref|XP_011652738.1| (PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 1.2e-17
Identity = 49/65 (75.38%), Postives = 53/65 (81.54%), Query Frame = 1


Query: 104 DQLEEVDQHGEEVPPMTETQSEHNYVSPVMMMPTFETTYYDSGVGQSLDFGRGYYNSEAG 163
           DQLEEVDQ+ EEV P+T+TQSEH YVS VMMMPTF TTYYD GVGQS DF   YYNSEAG
Sbjct: 169 DQLEEVDQNVEEVAPVTQTQSEHGYVSLVMMMPTFGTTYYDYGVGQSSDFRTWYYNSEAG 228

Query: 164 SDPSS 169
           S  S+
Sbjct: 229 SSSSN 233

The following BLAST results are available for this feature:

BLAST of MELO3C020246 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069376\|ref\|XP_008449513.1\|	9.0e-119	87.40	PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo]	[more]
gi\|659126257\|ref\|XP_008463092.1\|	8.9e-34	95.95	PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis mel...	[more]
gi\|659123452\|ref\|XP_008461671.1\|	6.4e-24	86.76	PREDICTED: CASP-like protein RCOM_0464280 isoform X2 [Cucumis melo]	[more]
gi\|659123450\|ref\|XP_008461670.1\|	6.4e-24	86.76	PREDICTED: CASP-like protein RCOM_0464280 isoform X1 [Cucumis melo]	[more]
gi\|778688386\|ref\|XP_011652738.1\|	1.2e-17	75.38	PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020246T1	MELO3C020246T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 212..231 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020246	Watermelon (97103) v2	mewmbB434
MELO3C020246	Wax gourd	mewgoB542
MELO3C020246	Cucumber (Gy14) v1	cgymeB609
MELO3C020246	Cucurbita maxima (Rimu)	cmameB243
MELO3C020246	Cucurbita maxima (Rimu)	cmameB431
MELO3C020246	Cucurbita moschata (Rifu)	cmomeB231
MELO3C020246	Cucurbita moschata (Rifu)	cmomeB421
MELO3C020246	Wild cucumber (PI 183967)	cpimeB243
MELO3C020246	Cucumber (Chinese Long) v2	cumeB246
MELO3C020246	Watermelon (Charleston Gray)	mewcgB427
MELO3C020246	Watermelon (97103) v1	mewmB461
MELO3C020246	Cucurbita pepo (Zucchini)	cpemeB529
MELO3C020246	Cucurbita pepo (Zucchini)	cpemeB586
MELO3C020246	Bottle gourd (USVL1VR-Ls)	lsimeB368
MELO3C020246	Cucumber (Gy14) v2	cgybmeB212
MELO3C020246	Silver-seed gourd	carmeB0515
MELO3C020246	Silver-seed gourd	carmeB0756
MELO3C020246	Cucumber (Chinese Long) v3	cucmeB249