MELO3C020243 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C020243
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionProbable L-threonine 3-dehydrogenase
Locationchr6 : 14777455 .. 14778216 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATCCCTATCGACGTTTACACCGTGCAAGTGAACTCCCACCGCATCTTCTTCCTCAGAATCTACTGAAGTTCTGCATGCTTAATTTACTATTGTTCCTGTCTTAAGACATCTCAAAACACCATCAAAATGCATCACAACTGTTGTCTCTCAGGTATCTCCTTCTGCCTCTAGTAGACCTATTACTCAATGTAAACCCAGGGTAATCATCTCCGATTTCAAGTTCGAAGATGATGTTGCGACTGAACCTACATCTTCATATGAGGATGATGTTGTCTTAAATAATGTGCTCAAACGAAAAGCAACTGCCTTTGCATTTGCCACTTTTGTCAAGAGCCCTGCCACAAACAAGAAGTTCAAACCCTCTAGATCGAAAAATGTAGAAGAGTTGTACGATGAACTATTTGGTTCACATTCATCTAATCTAGGTTTTTCTCCCTCTAGTAAGTTTCCTTCTTCCTCTCAAATTTCCCGTTCGTTTGATGAACCTATTGATGATTTGTTTGCTGAGTTTCAACATGTACCTGCTCCTTATAGAGAACGTTCCTATCATGCACCCCCTGATGTTGATCCGTTTCCTAAGTCTGCTCCATCGCAAACCACTACTACTCAGGAGCCTCTGCTTTCTACACCTGTCTCGTCTCATCACATTAATGTTCCTGGAACTACCACTCACGTTCCCCAATCTTGTTTTGTTCTGGTCCCTTCTGGTAATTTGCCTCACAAGATGTATCGGGCCTCCTCTAGTAACAGAAAGTAG

mRNA sequence

ATGTCATCCCTATCGACGTTTACACCGTGCAAACATCTCAAAACACCATCAAAATGCATCACAACTGTTGTCTCTCAGGTATCTCCTTCTGCCTCTAGTAGACCTATTACTCAATGTAAACCCAGGGTAATCATCTCCGATTTCAAGTTCGAAGATGATGTTGCGACTGAACCTACATCTTCATATGAGGATGATGTTGTCTTAAATAATGTGCTCAAACGAAAAGCAACTGCCTTTGCATTTGCCACTTTTGTCAAGAGCCCTGCCACAAACAAGAAGTTCAAACCCTCTAGATCGAAAAATGTAGAAGAGTTGTACGATGAACTATTTGGTTCACATTCATCTAATCTAGGTTTTTCTCCCTCTAGTAAGTTTCCTTCTTCCTCTCAAATTTCCCGTTCGTTTGATGAACCTATTGATGATTTGTTTGCTGAGTTTCAACATGTACCTGCTCCTTATAGAGAACGTTCCTATCATGCACCCCCTGATGTTGATCCGTTTCCTAAGTCTGCTCCATCGCAAACCACTACTACTCAGGAGCCTCTGCTTTCTACACCTGTCTCGTCTCATCACATTAATGTTCCTGGAACTACCACTCACGTTCCCCAATCTTGTTTTGTTCTGGTCCCTTCTGGTAATTTGCCTCACAAGATGTATCGGGCCTCCTCTAGTAACAGAAAGTAG

Coding sequence (CDS)

ATGTCATCCCTATCGACGTTTACACCGTGCAAACATCTCAAAACACCATCAAAATGCATCACAACTGTTGTCTCTCAGGTATCTCCTTCTGCCTCTAGTAGACCTATTACTCAATGTAAACCCAGGGTAATCATCTCCGATTTCAAGTTCGAAGATGATGTTGCGACTGAACCTACATCTTCATATGAGGATGATGTTGTCTTAAATAATGTGCTCAAACGAAAAGCAACTGCCTTTGCATTTGCCACTTTTGTCAAGAGCCCTGCCACAAACAAGAAGTTCAAACCCTCTAGATCGAAAAATGTAGAAGAGTTGTACGATGAACTATTTGGTTCACATTCATCTAATCTAGGTTTTTCTCCCTCTAGTAAGTTTCCTTCTTCCTCTCAAATTTCCCGTTCGTTTGATGAACCTATTGATGATTTGTTTGCTGAGTTTCAACATGTACCTGCTCCTTATAGAGAACGTTCCTATCATGCACCCCCTGATGTTGATCCGTTTCCTAAGTCTGCTCCATCGCAAACCACTACTACTCAGGAGCCTCTGCTTTCTACACCTGTCTCGTCTCATCACATTAATGTTCCTGGAACTACCACTCACGTTCCCCAATCTTGTTTTGTTCTGGTCCCTTCTGGTAATTTGCCTCACAAGATGTATCGGGCCTCCTCTAGTAACAGAAAGTAG

Protein sequence

MSSLSTFTPCKHLKTPSKCITTVVSQVSPSASSRPITQCKPRVIISDFKFEDDVATEPTSSYEDDVVLNNVLKRKATAFAFATFVKSPATNKKFKPSRSKNVEELYDELFGSHSSNLGFSPSSKFPSSSQISRSFDEPIDDLFAEFQHVPAPYRERSYHAPPDVDPFPKSAPSQTTTTQEPLLSTPVSSHHINVPGTTTHVPQSCFVLVPSGNLPHKMYRASSSNRK*
Homology
[Close]
BLAST of MELO3C020243 vs. NCBI nr
Match: gi|659116526|ref|XP_008458113.1| (PREDICTED: uncharacterized protein LOC103497643 [Cucumis melo])

HSP 1 Score: 119.0 bits (297), Expect = 1.1e-23
Identity = 75/162 (46.30%), Postives = 85/162 (52.47%), Query Frame = 1 

Query: 43  VIISDFKFEDDVATEPTSSYEDDVVLNNVLKRKATAFAFATFVKSPATNKKFKPSRSKNV 102
           VIISD + EDDV T P S  E  VV+ +VLK+KA +             K+F PSR    
Sbjct: 51  VIISDSESEDDVETAPVSFDEYGVVVVDVLKQKAISV------------KRFSPSR---- 110

Query: 103 EELYDELFGSHSSNLGFSPSSKFPSSSQISRSFDEPIDDLFAEFQHVPAPYRERSYHAPP 162
                                KFPSS Q+ RS DEPIDDLF EFQHV  P+ E S +APP
Sbjct: 111 ---------------------KFPSSLQVPRSSDEPIDDLFDEFQHVSIPHGEESSYAPP 170

Query: 163 DVDPFPKSAPSQTTTTQEPLLSTPVSSHHINVPGTTTHVPQS 205
            VD F  S  SQTT  QEP   TP SSH  +VP  TTH P S
Sbjct: 171 TVDSFSGSTLSQTTAAQEPPFFTPASSHPTDVPDVTTHAPSS 175

[Close]
BLAST of MELO3C020243 vs. NCBI nr
Match: gi|659114880|ref|XP_008457271.1| (PREDICTED: uncharacterized protein LOC103496999 [Cucumis melo])

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-15
Identity = 49/69 (71.01%), Postives = 53/69 (76.81%), Query Frame = 1 

Query: 5   STFTPCKHLKTPSKCITTVVSQVSPSASSRPITQCKPRVIISDFKFEDDVATEPTSSYED 64
           +T    +HLK PSKC T  V QVSPSASSRP TQ KPRVIISD +FEDDVATE  SS ED
Sbjct: 186 TTTLASRHLKKPSKCNTATVFQVSPSASSRPATQRKPRVIISDSEFEDDVATELASSDED 245

Query: 65  DVVLNNVLK 74
           D+VL NVLK
Sbjct: 246 DIVLANVLK 254

The following BLAST results are available for this feature:
BLAST of MELO3C020243 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659116526|ref|XP_008458113.1|1.1e-2346.30PREDICTED: uncharacterized protein LOC103497643 [Cucumis melo][more]
gi|659114880|ref|XP_008457271.1|1.1e-1571.01PREDICTED: uncharacterized protein LOC103496999 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020243T1MELO3C020243T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C020243Wax gourdmewgoB542
MELO3C020243Cucumber (Gy14) v1cgymeB609
MELO3C020243Cucurbita maxima (Rimu)cmameB243
MELO3C020243Cucurbita maxima (Rimu)cmameB431
MELO3C020243Cucurbita moschata (Rifu)cmomeB231
MELO3C020243Cucurbita moschata (Rifu)cmomeB421
MELO3C020243Wild cucumber (PI 183967)cpimeB243
MELO3C020243Cucumber (Chinese Long) v2cumeB246
MELO3C020243Watermelon (Charleston Gray)mewcgB427
MELO3C020243Watermelon (97103) v1mewmB461
MELO3C020243Cucurbita pepo (Zucchini)cpemeB529
MELO3C020243Cucurbita pepo (Zucchini)cpemeB586
MELO3C020243Bottle gourd (USVL1VR-Ls)lsimeB368
MELO3C020243Cucumber (Gy14) v2cgybmeB212
MELO3C020243Silver-seed gourdcarmeB0515
MELO3C020243Silver-seed gourdcarmeB0756
MELO3C020243Cucumber (Chinese Long) v3cucmeB249
MELO3C020243Watermelon (97103) v2mewmbB434