MELO3C020232 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020232
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	TATA-binding protein-associated factor 172
Location	chr6 : 14929960 .. 14930422 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAGAGATGAAGACCTTATTTTGGACAAGGTTAACATGTATGGTAATGGTGGAGACAGGCAGATGTTTCCATCAAAATCTATACATAATATCCAACAGTTTGTTGCTAATATGGTCCCATATATTGTATCCAAAAGGCCTAGTGCTCGAGAAATGAACCTTCTGAAACGGAAAGCAAAAATAAACTCCAAGGACCAGTCAAAACATTGGTCTGAGGAAGGAGAGGCAGATGTAGCAGGCACCCAACTAGTGGAAACACCAAGGGGCTCAGGTCCGGACATATTAAGTTCACAAAAGGTACTATCCTTCTATCATCTCTTTGAATGGCTACCTGACCTATTCCTTTGCTTTTTCTACAAGGCTTCTAGTGCTTTTCTTGGTGCTTTTTGCTTGTATCAAATGTATGTATCAGTATTGTTTGGCTCCTATACTTATTCTGATGTTTGGATTGGTTGTGTAA

mRNA sequence

ATGATAAGAGATGAAGACCTTATTTTGGACAAGGTTAACATGTATGGTAATGGTGGAGACAGGCAGATGTTTCCATCAAAATCTATACATAATATCCAACAGTTTGTTGCTAATATGGTCCCATATATTGTATCCAAAAGGCCTAGTGCTCGAGAAATGAACCTTCTGAAACGGAAAGCAAAAATAAACTCCAAGGACCAGTCAAAACATTGGTCTGAGGAAGGAGAGGCAGATGTAGCAGGCACCCAACTAGTGGAAACACCAAGGGGCTCAGGTCCGGACATATTAAGTTCACAAAAGTATTGTTTGGCTCCTATACTTATTCTGATGTTTGGATTGGTTGTGTAA

Coding sequence (CDS)

ATGATAAGAGATGAAGACCTTATTTTGGACAAGGTTAACATGTATGGTAATGGTGGAGACAGGCAGATGTTTCCATCAAAATCTATACATAATATCCAACAGTTTGTTGCTAATATGGTCCCATATATTGTATCCAAAAGGCCTAGTGCTCGAGAAATGAACCTTCTGAAACGGAAAGCAAAAATAAACTCCAAGGACCAGTCAAAACATTGGTCTGAGGAAGGAGAGGCAGATGTAGCAGGCACCCAACTAGTGGAAACACCAAGGGGCTCAGGTCCGGACATATTAAGTTCACAAAAGTATTGTTTGGCTCCTATACTTATTCTGATGTTTGGATTGGTTGTGTAA

Protein sequence

MIRDEDLILDKVNMYGNGGDRQMFPSKSIHNIQQFVANMVPYIVSKRPSAREMNLLKRKAKINSKDQSKHWSEEGEADVAGTQLVETPRGSGPDILSSQKYCLAPILILMFGLVV*

Homology

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BLAST of MELO3C020232 vs. Swiss-Prot
Match: BTAF1_ARATH (TATA-binding protein-associated factor BTAF1 OS=Arabidopsis thaliana GN=BTAF1 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.6e-18
Identity = 49/100 (49.00%), Postives = 66/100 (66.00%), Query Frame = 1


Query: 1   MIRDEDLILDKVNMYGNGGDRQMFPSKSIHNIQQFVANMVPYIVSKRPSAREMNLLKRKA 60
           MIRDEDLI  K N+  NG   +++ + S H+IQQFV+ MVP + S+RPSARE+NLLKRKA
Sbjct: 181 MIRDEDLIEQKSNVPANGVGNRLYANCSPHHIQQFVSRMVPRVNSRRPSARELNLLKRKA 240

Query: 61  KINSKDQSKHWSEEGEADVAGTQLVETPRGSGPDILSSQK 101
           KI+SKDQ+K   E  + +++ + +  T +    D L S K
Sbjct: 241 KISSKDQAKGSCEVADVEMSSSHVASTSKRILSDSLDSSK 280

[Close]

BLAST of MELO3C020232 vs. TrEMBL
Match: A0A0A0L7K9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G305640 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 9.3e-47
Identity = 95/100 (95.00%), Postives = 97/100 (97.00%), Query Frame = 1


Query: 1   MIRDEDLILDKVNMYGNGGDRQMFPSKSIHNIQQFVANMVPYIVSKRPSAREMNLLKRKA 60
           MIRDEDLILDKVNMY NGGDRQMFPSKSIHNIQQFVANMVPYIVSKRPSAREMNLLKRKA
Sbjct: 174 MIRDEDLILDKVNMYDNGGDRQMFPSKSIHNIQQFVANMVPYIVSKRPSAREMNLLKRKA 233

Query: 61  KINSKDQSKHWSEEGEADVAGTQLVETPRGSGPDILSSQK 101
           KINSKDQ+KHWSEEGE DVAGTQLVETPRG GPD+LSSQK
Sbjct: 234 KINSKDQTKHWSEEGETDVAGTQLVETPRGLGPDLLSSQK 273

[Close]

BLAST of MELO3C020232 vs. TrEMBL
Match: A0A067EES6_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0002372mg PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.3e-26
Identity = 60/100 (60.00%), Postives = 79/100 (79.00%), Query Frame = 1


Query: 1   MIRDEDLILDKVNMYGNGGDRQMFPSKSIHNIQQFVANMVPYIVSKRPSAREMNLLKRKA 60
           MI+DEDLI+ K+N +GNG DR+ + S S HNIQ+ V++MVP ++SKRPSARE+N+LKRKA
Sbjct: 13  MIKDEDLIVHKLNSHGNGFDRRFYTSASAHNIQRLVSSMVPSVISKRPSARELNMLKRKA 72

Query: 61  KINSKDQSKHWSEEGEADVAGTQLVETPRGSGPDILSSQK 101
           KI+SKDQSK WSE+G+ +V   Q V TP+GS  D  +S K
Sbjct: 73  KISSKDQSKSWSEDGDMEVPHAQNVTTPKGSCGDPFNSNK 112

[Close]

BLAST of MELO3C020232 vs. TrEMBL
Match: V4TL62_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030472mg PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.3e-26
Identity = 60/100 (60.00%), Postives = 79/100 (79.00%), Query Frame = 1


Query: 1   MIRDEDLILDKVNMYGNGGDRQMFPSKSIHNIQQFVANMVPYIVSKRPSAREMNLLKRKA 60
           MI+DEDLI+ K+N +GNG DR+ + S S HNIQ+ V++MVP ++SKRPSARE+N+LKRKA
Sbjct: 180 MIKDEDLIVHKLNSHGNGFDRRFYTSASAHNIQRLVSSMVPSVISKRPSARELNMLKRKA 239

Query: 61  KINSKDQSKHWSEEGEADVAGTQLVETPRGSGPDILSSQK 101
           KI+SKDQSK WSE+G+ +V   Q V TP+GS  D  +S K
Sbjct: 240 KISSKDQSKSWSEDGDMEVPHAQNVTTPKGSCGDPFNSNK 279

[Close]

BLAST of MELO3C020232 vs. TrEMBL
Match: A0A061F7A0_THECC (DNA binding,ATP binding,nucleic acid bindin isoform 1 OS=Theobroma cacao GN=TCM_025757 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 9.0e-26
Identity = 60/102 (58.82%), Postives = 80/102 (78.43%), Query Frame = 1


Query: 1   MIRDEDLILDKVNMYGNGGDRQMFPSKSIHNIQQFVANMVPYIVSKR-PSAREMNLLKRK 60
           MIRDEDLI+DK++ +GNG D + + S SIHNI+QFV+ MVP + SKR PSARE+N+LKRK
Sbjct: 181 MIRDEDLIVDKLHHHGNGLDNRFYTSPSIHNIRQFVSRMVPNVTSKRRPSARELNMLKRK 240

Query: 61  AKINSKDQSKHWSEEGEADVAGTQLVETPRGSGPDILSSQKY 102
           AKINSKDQ+K WS++G+ +V+      TPRG+ PD + S K+
Sbjct: 241 AKINSKDQAKGWSDDGDTEVSPAHNASTPRGTCPDPVGSSKF 282

[Close]

BLAST of MELO3C020232 vs. TrEMBL
Match: A0A061F0G1_THECC (DNA binding,ATP binding,nucleic acid bindin isoform 5 OS=Theobroma cacao GN=TCM_025757 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 9.0e-26
Identity = 60/102 (58.82%), Postives = 80/102 (78.43%), Query Frame = 1


Query: 1   MIRDEDLILDKVNMYGNGGDRQMFPSKSIHNIQQFVANMVPYIVSKR-PSAREMNLLKRK 60
           MIRDEDLI+DK++ +GNG D + + S SIHNI+QFV+ MVP + SKR PSARE+N+LKRK
Sbjct: 181 MIRDEDLIVDKLHHHGNGLDNRFYTSPSIHNIRQFVSRMVPNVTSKRRPSARELNMLKRK 240

Query: 61  AKINSKDQSKHWSEEGEADVAGTQLVETPRGSGPDILSSQKY 102
           AKINSKDQ+K WS++G+ +V+      TPRG+ PD + S K+
Sbjct: 241 AKINSKDQAKGWSDDGDTEVSPAHNASTPRGTCPDPVGSSKF 282

[Close]

BLAST of MELO3C020232 vs. TAIR10
Match: AT3G54280.2 (AT3G54280.2 DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases)

HSP 1 Score: 92.8 bits (229), Expect = 1.5e-19
Identity = 49/100 (49.00%), Postives = 66/100 (66.00%), Query Frame = 1


Query: 1   MIRDEDLILDKVNMYGNGGDRQMFPSKSIHNIQQFVANMVPYIVSKRPSAREMNLLKRKA 60
           MIRDEDLI  K N+  NG   +++ + S H+IQQFV+ MVP + S+RPSARE+NLLKRKA
Sbjct: 212 MIRDEDLIEQKSNVPANGVGNRLYANCSPHHIQQFVSRMVPRVNSRRPSARELNLLKRKA 271

Query: 61  KINSKDQSKHWSEEGEADVAGTQLVETPRGSGPDILSSQK 101
           KI+SKDQ+K   E  + +++ + +  T +    D L S K
Sbjct: 272 KISSKDQAKGSCEVADVEMSSSHVASTSKRILSDSLDSSK 311

[Close]

BLAST of MELO3C020232 vs. NCBI nr
Match: gi|659114355|ref|XP_008457028.1| (PREDICTED: TATA-binding protein-associated factor BTAF1 [Cucumis melo])

HSP 1 Score: 202.6 bits (514), Expect = 3.7e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1


Query: 1   MIRDEDLILDKVNMYGNGGDRQMFPSKSIHNIQQFVANMVPYIVSKRPSAREMNLLKRKA 60
           MIRDEDLILDKVNMYGNGGDRQMFPSKSIHNIQQFVANMVPYIVSKRPSAREMNLLKRKA
Sbjct: 174 MIRDEDLILDKVNMYGNGGDRQMFPSKSIHNIQQFVANMVPYIVSKRPSAREMNLLKRKA 233

Query: 61  KINSKDQSKHWSEEGEADVAGTQLVETPRGSGPDILSSQK 101
           KINSKDQSKHWSEEGEADVAGTQLVETPRGSGPDILSSQK
Sbjct: 234 KINSKDQSKHWSEEGEADVAGTQLVETPRGSGPDILSSQK 273

[Close]

BLAST of MELO3C020232 vs. NCBI nr
Match: gi|778680790|ref|XP_011651396.1| (PREDICTED: TATA-binding protein-associated factor BTAF1 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 1.3e-46
Identity = 95/100 (95.00%), Postives = 97/100 (97.00%), Query Frame = 1


Query: 1   MIRDEDLILDKVNMYGNGGDRQMFPSKSIHNIQQFVANMVPYIVSKRPSAREMNLLKRKA 60
           MIRDEDLILDKVNMY NGGDRQMFPSKSIHNIQQFVANMVPYIVSKRPSAREMNLLKRKA
Sbjct: 174 MIRDEDLILDKVNMYDNGGDRQMFPSKSIHNIQQFVANMVPYIVSKRPSAREMNLLKRKA 233

Query: 61  KINSKDQSKHWSEEGEADVAGTQLVETPRGSGPDILSSQK 101
           KINSKDQ+KHWSEEGE DVAGTQLVETPRG GPD+LSSQK
Sbjct: 234 KINSKDQTKHWSEEGETDVAGTQLVETPRGLGPDLLSSQK 273

[Close]

BLAST of MELO3C020232 vs. NCBI nr
Match: gi|700202660|gb|KGN57793.1| (hypothetical protein Csa_3G305640 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 1.3e-46
Identity = 95/100 (95.00%), Postives = 97/100 (97.00%), Query Frame = 1


Query: 1   MIRDEDLILDKVNMYGNGGDRQMFPSKSIHNIQQFVANMVPYIVSKRPSAREMNLLKRKA 60
           MIRDEDLILDKVNMY NGGDRQMFPSKSIHNIQQFVANMVPYIVSKRPSAREMNLLKRKA
Sbjct: 174 MIRDEDLILDKVNMYDNGGDRQMFPSKSIHNIQQFVANMVPYIVSKRPSAREMNLLKRKA 233

Query: 61  KINSKDQSKHWSEEGEADVAGTQLVETPRGSGPDILSSQK 101
           KINSKDQ+KHWSEEGE DVAGTQLVETPRG GPD+LSSQK
Sbjct: 234 KINSKDQTKHWSEEGETDVAGTQLVETPRGLGPDLLSSQK 273

[Close]

BLAST of MELO3C020232 vs. NCBI nr
Match: gi|641830346|gb|KDO49436.1| (hypothetical protein CISIN_1g0002372mg, partial [Citrus sinensis])

HSP 1 Score: 125.2 bits (313), Expect = 7.6e-26
Identity = 60/100 (60.00%), Postives = 79/100 (79.00%), Query Frame = 1


Query: 1   MIRDEDLILDKVNMYGNGGDRQMFPSKSIHNIQQFVANMVPYIVSKRPSAREMNLLKRKA 60
           MI+DEDLI+ K+N +GNG DR+ + S S HNIQ+ V++MVP ++SKRPSARE+N+LKRKA
Sbjct: 13  MIKDEDLIVHKLNSHGNGFDRRFYTSASAHNIQRLVSSMVPSVISKRPSARELNMLKRKA 72

Query: 61  KINSKDQSKHWSEEGEADVAGTQLVETPRGSGPDILSSQK 101
           KI+SKDQSK WSE+G+ +V   Q V TP+GS  D  +S K
Sbjct: 73  KISSKDQSKSWSEDGDMEVPHAQNVTTPKGSCGDPFNSNK 112

[Close]

BLAST of MELO3C020232 vs. NCBI nr
Match: gi|567889601|ref|XP_006437321.1| (hypothetical protein CICLE_v10030472mg [Citrus clementina])

HSP 1 Score: 125.2 bits (313), Expect = 7.6e-26
Identity = 60/100 (60.00%), Postives = 79/100 (79.00%), Query Frame = 1


Query: 1   MIRDEDLILDKVNMYGNGGDRQMFPSKSIHNIQQFVANMVPYIVSKRPSAREMNLLKRKA 60
           MI+DEDLI+ K+N +GNG DR+ + S S HNIQ+ V++MVP ++SKRPSARE+N+LKRKA
Sbjct: 180 MIKDEDLIVHKLNSHGNGFDRRFYTSASAHNIQRLVSSMVPSVISKRPSARELNMLKRKA 239

Query: 61  KINSKDQSKHWSEEGEADVAGTQLVETPRGSGPDILSSQK 101
           KI+SKDQSK WSE+G+ +V   Q V TP+GS  D  +S K
Sbjct: 240 KISSKDQSKSWSEDGDMEVPHAQNVTTPKGSCGDPFNSNK 279

The following BLAST results are available for this feature:

BLAST of MELO3C020232 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BTAF1_ARATH	2.6e-18	49.00	TATA-binding protein-associated factor BTAF1 OS=Arabidopsis thaliana GN=BTAF1 PE...	[more]

BLAST of MELO3C020232 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7K9_CUCSA	9.3e-47	95.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G305640 PE=4 SV=1	[more]
A0A067EES6_CITSI	5.3e-26	60.00	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0002372mg PE=4 ...	[more]
V4TL62_9ROSI	5.3e-26	60.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030472mg PE=4 SV=1	[more]
A0A061F7A0_THECC	9.0e-26	58.82	DNA binding,ATP binding,nucleic acid bindin isoform 1 OS=Theobroma cacao GN=TCM_...	[more]
A0A061F0G1_THECC	9.0e-26	58.82	DNA binding,ATP binding,nucleic acid bindin isoform 5 OS=Theobroma cacao GN=TCM_...	[more]

BLAST of MELO3C020232 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G54280.2	1.5e-19	49.00	DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP b...	[more]

BLAST of MELO3C020232 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114355\|ref\|XP_008457028.1\|	3.7e-49	100.00	PREDICTED: TATA-binding protein-associated factor BTAF1 [Cucumis melo]	[more]
gi\|778680790\|ref\|XP_011651396.1\|	1.3e-46	95.00	PREDICTED: TATA-binding protein-associated factor BTAF1 [Cucumis sativus]	[more]
gi\|700202660\|gb\|KGN57793.1\|	1.3e-46	95.00	hypothetical protein Csa_3G305640 [Cucumis sativus]	[more]
gi\|641830346\|gb\|KDO49436.1\|	7.6e-26	60.00	hypothetical protein CISIN_1g0002372mg, partial [Citrus sinensis]	[more]
gi\|567889601\|ref\|XP_006437321.1\|	7.6e-26	60.00	hypothetical protein CICLE_v10030472mg [Citrus clementina]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046486	glycerolipid metabolic process
biological_process	GO:0006071	glycerol metabolic process
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004371	glycerone kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020232T1	MELO3C020232T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020232	Cucumber (Chinese Long) v3	cucmeB249
MELO3C020232	Watermelon (97103) v2	mewmbB434
MELO3C020232	Wax gourd	mewgoB542
MELO3C020232	Cucumber (Gy14) v1	cgymeB609
MELO3C020232	Cucurbita maxima (Rimu)	cmameB243
MELO3C020232	Cucurbita maxima (Rimu)	cmameB431
MELO3C020232	Cucurbita moschata (Rifu)	cmomeB231
MELO3C020232	Cucurbita moschata (Rifu)	cmomeB421
MELO3C020232	Wild cucumber (PI 183967)	cpimeB243
MELO3C020232	Cucumber (Chinese Long) v2	cumeB246
MELO3C020232	Watermelon (Charleston Gray)	mewcgB427
MELO3C020232	Watermelon (97103) v1	mewmB461
MELO3C020232	Cucurbita pepo (Zucchini)	cpemeB529
MELO3C020232	Cucurbita pepo (Zucchini)	cpemeB586
MELO3C020232	Bottle gourd (USVL1VR-Ls)	lsimeB368
MELO3C020232	Cucumber (Gy14) v2	cgybmeB212
MELO3C020232	Silver-seed gourd	carmeB0515
MELO3C020232	Silver-seed gourd	carmeB0756