MELO3C020227.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C020227.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionLOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like
Locationchr06 : 16169271 .. 16170678 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAAAAGACGTCAACACAAAGAACATCGAGAATAAGGGTATTTCCGACGCTGGACAGACGCGTCGTGAAAGCTGCGTCGAAGAAAATTCTATTCCCGACGCCTCGTACAATGTGTCAGGAGTGGCATCGGGAAAAAGGGTATTCCCAGCACGTCAAGCACACGTCGGTCAAACGGCGTCGAGAATACCCTTATTCTCGACGCGATAACAGGGATCTCCCAACGTATTCGTGCGGCATCGGGAGATCCTCTTTTTAAACGTTTTAGTTCTATTTTACACAGAACTGAAAACGAAATGGAAAGGGAGAAGAGAGAAACGAAGATTCGTCCATGTCCGTTCCGTCATCGCTGTCATCCCTCGCCGTCGTCCCTCGCCGTTCCGCCGCGGTCTGCCACCTTAGATAAGTTTGAATATAAAGTTTGTTTAGTTTAAATATAAGTTTTACGATTTTTTTTAAGAAAATTGTTTTAGGATTTTGTTTTGGAATAGATTTTTGTTTGTTAAATGTATTTTTGTATAGAATGTGTCTAATTTGTGGTTGAATTGAAATTTGAAGGATTTAGGGTTTAGGATTTGTAGTTAAATGGAAAATTGAGTGGGGAGGGATTTATAGTTAAATTGAAATTTGAAGGGTTTAGGGTTCAAGGTTTAGGGTTAATTTGAAATTTAAAAAGAGGATTACTAGCTAAATTGAAATTTAGAGGGGGTTACCAGTGGGTTTCTTTGCAATAATATGCTTTGTAGTTGAATTCAGTTTTTATTAAATAATGACACTTGTAAGCCTAATTAGTATATTCTGGCTAATATTTAGTTTAGTTGATAATTTAGATTATTTAGTTATTTTAATATCTTTTTTTTTGTAAGATCATCAAAGTTTTCATTTAAATATCTTTGTTGTTGATTTGAGATGACTATCCTGCAGTTATGGTAGCTTTTTTTGTTTTGAATTTGCTTCTGTTTAGGATGGTTTCAAGGGGTGGTAGTAAGATAGCTTGAAGTATTTTGTTGTTAATAATTAGGTTGTGTTGGCTATCCACGTAATAATTAGATTGTTTTCTATGTTCACAGCCATTATGTCATCGTCATACCCACGTAATAATTTTATGAAAACGGATGCTATGTTCCTTTAGTTTGAGGACGATTTAGATAACATCGCGGGAGGGTCGTTGTCTGAGGGCGACAATGCAGGTGAATCTAAGAATTTCCTTCATTTTAACTCATGATTATTTCATGTTTTTTTGCTAACACTATATGTTATTATCGATTTATTGAGCAGGGCCTTCTTCTCAACAACCTGCGACTCTGACTTTTAGGATACGTGCGCAGTCTCGACTCTTGGAGTTAGAGCATCACGTTGCAATAAATGGGCGCATTCCAATGACGATCGCCCCTAGAGCGAAGTGA

mRNA sequence

ATGGCAAAAAAGACGTCAACACAAAGAACATCGAGAATAAGGGTATtTCCGACGCTGGACAGACGCGTCGTGAAAGCTGCGTCGAAGAAAATTCTATTCCCGACGCCTCGTACAATGTGTCAGGAGTGGCATCGGGAAAAAGGGTATTCCCAGCACGTCAAGCACACGTCGGTCAAACGGCGTCGAGAATACCCTTATTCTCGACGCGATAACAGGGATCTCCCAACAACTGAAAACGAAATGGAAAGGGAGAAGAGAGAAACGAAGATTCGTCCATGTCCGTTCCGTCATCGCTGTCATCCCTCGCCGTCGTCCCTCGCCGTTCCGCCGCGGTCTGCCACCTTAGATAAGTTTGAATATAAAGTTGTGTTGGCTATCCACTTTGAGGACGATTTAGATAACATCGCGGGAGGGTCGTTGTCTGAGGGCGACAATGCAGGGCCTTCTTCTCAACAACCTGCGACTCTGACTTTTAGGATACGTGCGCAGTCTCGACTCTTGGAGTTAGAGCATCACGTTGCAATAAATGGGCGCATTCCAATGACGATCGCCCCTAGAGCGAAGTGA

Coding sequence (CDS)

ATGGCAAAAAAGACGTCAACACAAAGAACATCGAGAATAAGGGTATTTCCGACGCTGGACAGACGCGTCGTGAAAGCTGCGTCGAAGAAAATTCTATTCCCGACGCCTCGTACAATGTGTCAGGAGTGGCATCGGGAAAAAGGGTATTCCCAGCACGTCAAGCACACGTCGGTCAAACGGCGTCGAGAATACCCTTATTCTCGACGCGATAACAGGGATCTCCCAACAACTGAAAACGAAATGGAAAGGGAGAAGAGAGAAACGAAGATTCGTCCATGTCCGTTCCGTCATCGCTGTCATCCCTCGCCGTCGTCCCTCGCCGTTCCGCCGCGGTCTGCCACCTTAGATAAGTTTGAATATAAAGTTGTGTTGGCTATCCACTTTGAGGACGATTTAGATAACATCGCGGGAGGGTCGTTGTCTGAGGGCGACAATGCAGGGCCTTCTTCTCAACAACCTGCGACTCTGACTTTTAGGATACGTGCGCAGTCTCGACTCTTGGAGTTAGAGCATCACGTTGCAATAAATGGGCGCATTCCAATGACGATCGCCCCTAGAGCGAAGTGA

Protein sequence

MAKKTSTQRTSRIRVFPTLDRRVVKAASKKILFPTPRTMCQEWHREKGYSQHVKHTSVKRRREYPYSRRDNRDLPTTENEMEREKRETKIRPCPFRHRCHPSPSSLAVPPRSATLDKFEYKVVLAIHFEDDLDNIAGGSLSEGDNAGPSSQQPATLTFRIRAQSRLLELEHHVAINGRIPMTIAPRAK
Homology
[Close]
BLAST of MELO3C020227.2 vs. NCBI nr
Match: XP_016901035.1 (PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 2.1e-13
Identity = 45/66 (68.18%), Postives = 50/66 (75.76%), Query Frame = 0 

Query: 123 VLAIHFEDDLDNIAGGSLSEGDNAGPSSQQPATLTFRIRAQSRLLELEHHVAINGRIPMT 182
           V+ + FEDDLDN+AGGS S GDNAG SSQ PAT T R R QSRLLELE HV + G IPM 
Sbjct: 13  VMFLEFEDDLDNLAGGSSSVGDNAGSSSQPPATQTPRRRVQSRLLELECHVVVYGCIPMM 72

Query: 183 IAPRAK 189
           IAP A+
Sbjct: 73  IAPGAE 78

[Close]
BLAST of MELO3C020227.2 vs. NCBI nr
Match: ADN34071.1 (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 84.7 bits (208), Expect = 3.6e-13
Identity = 48/63 (76.19%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 126 IHFEDDLDNIAGGSLSEGDNAGPSSQQPATLTFRIRAQSRLLELEHHVAINGRIPMTIAP 185
           + FEDDLDNIAGGS S GDN   SSQQ AT T R RAQSRLLELE HVAING IPMTIAP
Sbjct: 8   LQFEDDLDNIAGGSSSVGDNTESSSQQ-ATPTPRRRAQSRLLELERHVAINGCIPMTIAP 67

Query: 186 RAK 189
            A+
Sbjct: 68  GAE 69

[Close]
BLAST of MELO3C020227.2 vs. NCBI nr
Match: XP_016902990.1 (PREDICTED: uncharacterized protein LOC107991989 [Cucumis melo])

HSP 1 Score: 56.2 bits (134), Expect = 1.4e-04
Identity = 29/44 (65.91%), Postives = 30/44 (68.18%), Query Frame = 0 

Query: 126 IHFEDDLDNIAGGSLSEGDNAGPSSQQPATLTFRIRAQSRLLEL 170
           + FED LDN  GGS S GDN G SSQQP TLT R   QSRLL L
Sbjct: 18  LEFEDQLDNFTGGSSSVGDNVGSSSQQPGTLTPRRHVQSRLLGL 61

[Close]
BLAST of MELO3C020227.2 vs. TrEMBL
Match: tr|A0A1S4DZ93|A0A1S4DZ93_CUCME (uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-13
Identity = 45/66 (68.18%), Postives = 50/66 (75.76%), Query Frame = 0 

Query: 123 VLAIHFEDDLDNIAGGSLSEGDNAGPSSQQPATLTFRIRAQSRLLELEHHVAINGRIPMT 182
           V+ + FEDDLDN+AGGS S GDNAG SSQ PAT T R R QSRLLELE HV + G IPM 
Sbjct: 13  VMFLEFEDDLDNLAGGSSSVGDNAGSSSQPPATQTPRRRVQSRLLELECHVVVYGCIPMM 72

Query: 183 IAPRAK 189
           IAP A+
Sbjct: 73  IAPGAE 78

[Close]
BLAST of MELO3C020227.2 vs. TrEMBL
Match: tr|E5GC72|E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.4e-13
Identity = 48/63 (76.19%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 126 IHFEDDLDNIAGGSLSEGDNAGPSSQQPATLTFRIRAQSRLLELEHHVAINGRIPMTIAP 185
           + FEDDLDNIAGGS S GDN   SSQQ AT T R RAQSRLLELE HVAING IPMTIAP
Sbjct: 8   LQFEDDLDNIAGGSSSVGDNTESSSQQ-ATPTPRRRAQSRLLELERHVAINGCIPMTIAP 67

Query: 186 RAK 189
            A+
Sbjct: 68  GAE 69

[Close]
BLAST of MELO3C020227.2 vs. TrEMBL
Match: tr|A0A1S4E4T7|A0A1S4E4T7_CUCME (uncharacterized protein LOC107991989 OS=Cucumis melo OX=3656 GN=LOC107991989 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 9.0e-05
Identity = 29/44 (65.91%), Postives = 30/44 (68.18%), Query Frame = 0 

Query: 126 IHFEDDLDNIAGGSLSEGDNAGPSSQQPATLTFRIRAQSRLLEL 170
           + FED LDN  GGS S GDN G SSQQP TLT R   QSRLL L
Sbjct: 18  LEFEDQLDNFTGGSSSVGDNVGSSSQQPGTLTPRRHVQSRLLGL 61

The following BLAST results are available for this feature:
BLAST of MELO3C020227.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016901035.12.1e-1368.18PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 P... [more]
ADN34071.13.6e-1376.19CACTA en-spm transposon protein [Cucumis melo subsp. melo][more]
XP_016902990.11.4e-0465.91PREDICTED: uncharacterized protein LOC107991989 [Cucumis melo][more]
BLAST of MELO3C020227.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C020227.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C020227.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DZ93|A0A1S4DZ93_CUCME1.4e-1368.18uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=... [more]
tr|E5GC72|E5GC72_CUCME2.4e-1376.19CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S4E4T7|A0A1S4E4T7_CUCME9.0e-0565.91uncharacterized protein LOC107991989 OS=Cucumis melo OX=3656 GN=LOC107991989 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003824 catalytic activity
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0008483 transaminase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020227.2.1MELO3C020227.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..88

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C020227.2Cucumber (Chinese Long) v3cucmedB247
MELO3C020227.2Watermelon (97103) v2medwmbB424
MELO3C020227.2Wax gourdmedwgoB541
MELO3C020227.2Wax gourdmedwgoB546
MELO3C020227.2Cucumber (Gy14) v2cgybmedB216
MELO3C020227.2Cucumber (Gy14) v1cgymedB606
MELO3C020227.2Cucurbita maxima (Rimu)cmamedB274
MELO3C020227.2Cucurbita maxima (Rimu)cmamedB496
MELO3C020227.2Cucurbita moschata (Rifu)cmomedB261
MELO3C020227.2Cucurbita moschata (Rifu)cmomedB483
MELO3C020227.2Cucurbita pepo (Zucchini)cpemedB630
MELO3C020227.2Cucurbita pepo (Zucchini)cpemedB694
MELO3C020227.2Wild cucumber (PI 183967)cpimedB240
MELO3C020227.2Cucumber (Chinese Long) v2cumedB239
MELO3C020227.2Bottle gourd (USVL1VR-Ls)lsimedB384
MELO3C020227.2Watermelon (Charleston Gray)medwcgB417
MELO3C020227.2Watermelon (97103) v1medwmB448
MELO3C020227.2Silver-seed gourdcarmedB0521
MELO3C020227.2Silver-seed gourdcarmedB0771