MELO3C020213 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020213
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Photosystem I P700 chlorophyll a apoprotein A1
Location	chr6 : 15429668 .. 15429850 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGCGAGCATCTGGAATAACTAATGAATTACAACTCTATTGTACCGCAATTGGTGCATTAGTCTTTGCAGCCTTAATGCTTTTTGCTGGTTGGTTTCATTATCACAAGGCTGCTCCAAAATTGGCTTGGTTCCAAAATGTAGAATCCATGTTGAATCACCATTTAACGGGTCTCCAGTAA

mRNA sequence

ATGTGGCGAGCATCTGGAATAACTAATGAATTACAACTCTATTGTACCGCAATTGGTGCATTAGTCTTTGCAGCCTTAATGCTTTTTGCTGGTTGGTTTCATTATCACAAGGCTGCTCCAAAATTGGCTTGGTTCCAAAATGTAGAATCCATGTTGAATCACCATTTAACGGGTCTCCAGTAA

Coding sequence (CDS)

ATGTGGCGAGCATCTGGAATAACTAATGAATTACAACTCTATTGTACCGCAATTGGTGCATTAGTCTTTGCAGCCTTAATGCTTTTTGCTGGTTGGTTTCATTATCACAAGGCTGCTCCAAAATTGGCTTGGTTCCAAAATGTAGAATCCATGTTGAATCACCATTTAACGGGTCTCCAGTAA

Protein sequence

MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGLQ*

Homology

[Close]

BLAST of MELO3C020213 vs. Swiss-Prot
Match: PSAA_PHAVU (Photosystem I P700 chlorophyll a apoprotein A1 OS=Phaseolus vulgaris GN=psaA PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.5e-28
Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 1


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           +WRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQ+VESMLNHHLTGL
Sbjct: 144 IWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLTGL 202

[Close]

BLAST of MELO3C020213 vs. Swiss-Prot
Match: PSAA_CUCSA (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus GN=psaA PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.3e-28
Identity = 57/59 (96.61%), Postives = 56/59 (94.92%), Query Frame = 1


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQ+VESMLNHHL GL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGL 202

[Close]

BLAST of MELO3C020213 vs. Swiss-Prot
Match: PSAA_VITVI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Vitis vinifera GN=psaA PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.3e-28
Identity = 57/59 (96.61%), Postives = 56/59 (94.92%), Query Frame = 1


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQ+VESMLNHHL GL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGL 202

[Close]

BLAST of MELO3C020213 vs. Swiss-Prot
Match: PSAA_CALFG (Photosystem I P700 chlorophyll a apoprotein A1 OS=Calycanthus floridus var. glaucus GN=psaA PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 7.3e-28
Identity = 56/59 (94.92%), Postives = 56/59 (94.92%), Query Frame = 1


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           +WRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQ+VESMLNHHL GL
Sbjct: 144 LWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGL 202

[Close]

BLAST of MELO3C020213 vs. Swiss-Prot
Match: PSAA_SOYBN (Photosystem I P700 chlorophyll a apoprotein A1 OS=Glycine max GN=psaA PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 9.5e-28
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 1


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           +WRASGIT+ELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQ+VESMLNHHLTGL
Sbjct: 144 IWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLTGL 202

[Close]

BLAST of MELO3C020213 vs. TrEMBL
Match: G3ETY5_CUCME (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis melo subsp. melo GN=psaA PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 9.6e-27
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 1


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHL GL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 202

[Close]

BLAST of MELO3C020213 vs. TrEMBL
Match: G3EU42_CUCME (Putative uncharacterized protein ORF4 OS=Cucumis melo subsp. melo GN=ORF4 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 9.6e-27
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 1


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHL GL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 202

[Close]

BLAST of MELO3C020213 vs. TrEMBL
Match: H6SZA1_9LILI (Photosystem I P700 apoprotein A1 (Fragment) OS=Belosynapsis ciliata GN=psaA PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.8e-26
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 1


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           +WRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHL GL
Sbjct: 144 IWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 202

[Close]

BLAST of MELO3C020213 vs. TrEMBL
Match: A0A0K0LUX6_9FABA (Photosystem I P700 chlorophyll a apoprotein A1 OS=Strophostyles leiosperma GN=psaA PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.8e-26
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = 1


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           +WRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQ+VESMLNHHLTGL
Sbjct: 144 IWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLTGL 202

[Close]

BLAST of MELO3C020213 vs. TrEMBL
Match: H6SZD4_TRAOH (Photosystem I P700 apoprotein A1 (Fragment) OS=Tradescantia ohiensis GN=psaA PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.8e-26
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 1


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           +WRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHL GL
Sbjct: 144 IWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 202

[Close]

BLAST of MELO3C020213 vs. TAIR10
Match: ATCG00350.1 (ATCG00350.1 Photosystem I, PsaA/PsaB protein)

HSP 1 Score: 121.3 bits (303), Expect = 2.0e-28
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 1


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           +WRASGIT+ELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQ+VESMLNHHL GL
Sbjct: 144 IWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGL 202

[Close]

BLAST of MELO3C020213 vs. TAIR10
Match: ATCG00340.1 (ATCG00340.1 Photosystem I, PsaA/PsaB protein)

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-08
Identity = 26/59 (44.07%), Postives = 32/59 (54.24%), Query Frame = 1


Query: 2   WRASGITNELQLYCTAIGALVFAALMLFAGWFHYH-KAAPKLAWFQNVESMLNHHLTGL 60
           W   G+     LY  A+  L  +AL L  GW H   K  P+++WF+N ES LNHHL+GL
Sbjct: 124 WYTIGLRTNEDLYTGALFLLFLSALSLIGGWLHLQPKWKPRVSWFKNAESRLNHHLSGL 182

[Close]

BLAST of MELO3C020213 vs. NCBI nr
Match: gi|346578191|ref|YP_004841783.1| (photosystem I P700 apoprotein A1 [Cucumis melo subsp. melo])

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-26
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 1


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHL GL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 202

[Close]

BLAST of MELO3C020213 vs. NCBI nr
Match: gi|345034447|gb|AEN56132.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-26
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 1


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHL GL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 202

[Close]

BLAST of MELO3C020213 vs. NCBI nr
Match: gi|289066818|ref|YP_003434336.1| (photosystem I P700 apoprotein A1 [Vigna radiata])

HSP 1 Score: 125.2 bits (313), Expect = 4.0e-26
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = 1


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           +WRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQ+VESMLNHHLTGL
Sbjct: 144 IWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLTGL 202

[Close]

BLAST of MELO3C020213 vs. NCBI nr
Match: gi|139387444|ref|YP_001122798.1| (photosystem I P700 apoprotein A1 [Phaseolus vulgaris])

HSP 1 Score: 125.2 bits (313), Expect = 4.0e-26
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = 1


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           +WRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQ+VESMLNHHLTGL
Sbjct: 144 IWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLTGL 202

[Close]

BLAST of MELO3C020213 vs. NCBI nr
Match: gi|1012321961|gb|KYP34360.1| (Photosystem I P700 chlorophyll a apoprotein A1 family [Cajanus cajan])

HSP 1 Score: 125.2 bits (313), Expect = 4.0e-26
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = 1


Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           +WRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQ+VESMLNHHLTGL
Sbjct: 170 IWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLTGL 228

The following BLAST results are available for this feature:

BLAST of MELO3C020213 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSAA_PHAVU	2.5e-28	96.61	Photosystem I P700 chlorophyll a apoprotein A1 OS=Phaseolus vulgaris GN=psaA PE=...	[more]
PSAA_CUCSA	3.3e-28	96.61	Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus GN=psaA PE=3 S...	[more]
PSAA_VITVI	3.3e-28	96.61	Photosystem I P700 chlorophyll a apoprotein A1 OS=Vitis vinifera GN=psaA PE=3 SV...	[more]
PSAA_CALFG	7.3e-28	94.92	Photosystem I P700 chlorophyll a apoprotein A1 OS=Calycanthus floridus var. glau...	[more]
PSAA_SOYBN	9.5e-28	94.92	Photosystem I P700 chlorophyll a apoprotein A1 OS=Glycine max GN=psaA PE=3 SV=1	[more]

BLAST of MELO3C020213 vs. TrEMBL


Match Name	E-value	Identity	Description
G3ETY5_CUCME	9.6e-27	98.31	Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis melo subsp. melo GN=ps...	[more]
G3EU42_CUCME	9.6e-27	98.31	Putative uncharacterized protein ORF4 OS=Cucumis melo subsp. melo GN=ORF4 PE=4 S...	[more]
H6SZA1_9LILI	2.8e-26	96.61	Photosystem I P700 apoprotein A1 (Fragment) OS=Belosynapsis ciliata GN=psaA PE=3...	[more]
A0A0K0LUX6_9FABA	2.8e-26	96.61	Photosystem I P700 chlorophyll a apoprotein A1 OS=Strophostyles leiosperma GN=ps...	[more]
H6SZD4_TRAOH	2.8e-26	96.61	Photosystem I P700 apoprotein A1 (Fragment) OS=Tradescantia ohiensis GN=psaA PE=...	[more]

BLAST of MELO3C020213 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00350.1	2.0e-28	93.22	ATCG00350.1 Photosystem I, PsaA/PsaB protein	[more]
ATCG00340.1	1.1e-08	44.07	ATCG00340.1 Photosystem I, PsaA/PsaB protein	[more]

BLAST of MELO3C020213 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|346578191\|ref\|YP_004841783.1\|	1.4e-26	98.31	photosystem I P700 apoprotein A1 [Cucumis melo subsp. melo]	[more]
gi\|345034447\|gb\|AEN56132.1\|	1.4e-26	98.31	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|289066818\|ref\|YP_003434336.1\|	4.0e-26	96.61	photosystem I P700 apoprotein A1 [Vigna radiata]	[more]
gi\|139387444\|ref\|YP_001122798.1\|	4.0e-26	96.61	photosystem I P700 apoprotein A1 [Phaseolus vulgaris]	[more]
gi\|1012321961\|gb\|KYP34360.1\|	4.0e-26	96.61	Photosystem I P700 chlorophyll a apoprotein A1 family [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001280	PSI_PsaA/B

Vocabulary: **Cellular Component**
Term	Definition
GO:0009522	photosystem I
GO:0009579	thylakoid
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0015979	photosynthesis
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0016491	oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020213T1	MELO3C020213T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001280	Photosystem I PsaA/PsaB	PRINTS	PR00257	PHOTSYSPSAAB	coord: 13..37 score: 6.1E-13coord: 52..60 score: 6.1
IPR001280	Photosystem I PsaA/PsaB	GENE3D	G3DSA:1.20.1130.10		coord: 1..59 score: 3.3
IPR001280	Photosystem I PsaA/PsaB	PFAM	PF00223	PsaA_PsaB	coord: 1..59 score: 1.5
IPR001280	Photosystem I PsaA/PsaB	unknown	SSF81558	Photosystem I subunits PsaA/PsaB	coord: 1..59 score: 1.01
None	No IPR available	PANTHER	PTHR30128	OUTER MEMBRANE PROTEIN, OMPA-RELATED	coord: 1..59 score: 1.5
None	No IPR available	PANTHER	PTHR30128:SF8	PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1	coord: 1..59 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020213	Cucurbita maxima (Rimu)	cmameB243
MELO3C020213	Cucurbita maxima (Rimu)	cmameB431
MELO3C020213	Cucurbita moschata (Rifu)	cmomeB229
MELO3C020213	Cucurbita moschata (Rifu)	cmomeB231
MELO3C020213	Cucurbita moschata (Rifu)	cmomeB421
MELO3C020213	Wild cucumber (PI 183967)	cpimeB243
MELO3C020213	Cucumber (Chinese Long) v2	cumeB246
MELO3C020213	Watermelon (Charleston Gray)	mewcgB427
MELO3C020213	Watermelon (Charleston Gray)	mewcgB434
MELO3C020213	Watermelon (97103) v1	mewmB461
MELO3C020213	Watermelon (97103) v1	mewmB474
MELO3C020213	Cucurbita pepo (Zucchini)	cpemeB529
MELO3C020213	Cucurbita pepo (Zucchini)	cpemeB583
MELO3C020213	Cucurbita pepo (Zucchini)	cpemeB586
MELO3C020213	Bottle gourd (USVL1VR-Ls)	lsimeB368
MELO3C020213	Bottle gourd (USVL1VR-Ls)	lsimeB385
MELO3C020213	Cucumber (Gy14) v2	cgybmeB212
MELO3C020213	Silver-seed gourd	carmeB0485
MELO3C020213	Cucumber (Chinese Long) v3	cucmeB249
MELO3C020213	Watermelon (97103) v2	mewmbB434
MELO3C020213	Watermelon (97103) v2	mewmbB444
MELO3C020213	Wax gourd	mewgoB539
MELO3C020213	Wax gourd	mewgoB542