MELO3C020194 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C020194
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionStructural maintenance of chromosomes (SMC) family protein
Locationchr6 : 15993055 .. 15993696 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGAGCAGTTAGAGGATGAGTCCAAAAAGAAGAAGAGCATTGCATTAAAGACCATCTCCTTGGAGGTTGATCTCGAAGATGAGGATGACCTTGATGTAGATGACATTGCTTATTTCTCACGTAAGTACAAAAATTTCATAAAAAGGAAGAAATATTTCAAGGAACAGCTATCAACTCAAAAAGAGTCAAAAGGTGAGAAAAGCAAAAAGGATGAGGTGATTTGTTATGCATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGATGACATTGCTTATTTCTCACGTAAGTCAAAAAATTTCATAAAAAGGAAGAAATATTTCAAGGAACAGCTATCAACTCAAAAAGAGTCAAAAGGTGAGAAAAGCAAAAAGGATGAGGTGATTTGTTATGCATGCAAAAAGTCGGGTCACATAAGAACAAATTTCTCTCTCTTGAAGGCTACTTGGGATGATAGTAGTGAAAGTGAAAGTGAAGTTGAAGAAATGGAAAACCTTGGTCTCATGGCTCATAGTAACAAAGAAGATGAACATGATGATGAGGTAACTCTAGAACCTCCTTCTATTGATGAATTGTTTGAAATGTTTGAAAGCATGCAAAATGACCTAGATTATTAA

mRNA sequence

ATGAAGGAGCAGTTAGAGGATGAGTCCAAAAAGAAGAAGAGCATTGCATTAAAGACCATCTCCTTGGAGGTTGATCTCGAAGATGAGGATGACCTTGATGTAGATGACATTGCTTATTTCTCACGTAAGTACAAAAATTTCATAAAAAGGAAGAAATATTTCAAGGAACAGCTATCAACTCAAAAAGAGTCAAAAGGTGAGAAAAGCAAAAAGGATGAGGCTACTTGGGATGATAGTAGTGAAAGTGAAAGTGAAGTTGAAGAAATGGAAAACCTTGGTCTCATGGCTCATAGTAACAAAGAAGATGAACATGATGATGAGGTAACTCTAGAACCTCCTTCTATTGATGAATTGTTTGAAATGTTTGAAAGCATGCAAAATGACCTAGATTATTAA

Coding sequence (CDS)

ATGAAGGAGCAGTTAGAGGATGAGTCCAAAAAGAAGAAGAGCATTGCATTAAAGACCATCTCCTTGGAGGTTGATCTCGAAGATGAGGATGACCTTGATGTAGATGACATTGCTTATTTCTCACGTAAGTACAAAAATTTCATAAAAAGGAAGAAATATTTCAAGGAACAGCTATCAACTCAAAAAGAGTCAAAAGGTGAGAAAAGCAAAAAGGATGAGGCTACTTGGGATGATAGTAGTGAAAGTGAAAGTGAAGTTGAAGAAATGGAAAACCTTGGTCTCATGGCTCATAGTAACAAAGAAGATGAACATGATGATGAGGTAACTCTAGAACCTCCTTCTATTGATGAATTGTTTGAAATGTTTGAAAGCATGCAAAATGACCTAGATTATTAA

Protein sequence

MKEQLEDESKKKKSIALKTISLEVDLEDEDDLDVDDIAYFSRKYKNFIKRKKYFKEQLSTQKESKGEKSKKDEATWDDSSESESEVEEMENLGLMAHSNKEDEHDDEVTLEPPSIDELFEMFESMQNDLDY*
Homology
[Close]
BLAST of MELO3C020194 vs. NCBI nr
Match: gi|778708527|ref|XP_011656224.1| (PREDICTED: uncharacterized protein LOC105435679 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 2.6e-38
Identity = 101/165 (61.21%), Postives = 108/165 (65.45%), Query Frame = 1 

Query: 1   MKEQLEDESKKKKSIALKTISLEVDLEDEDDLDVDDIAYFSRKYKNFIKRKKYFKEQLST 60
           MKE LEDESKKKKSIALKTISLEVD EDED LD DDIAYFSRKYKNFIKRKKYFK+ LST
Sbjct: 150 MKEHLEDESKKKKSIALKTISLEVDPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLST 209

Query: 61  QKESKGEKSKKDEATWDD-----------------------------SSESESEVEEMEN 120
           QKESKGEKSKKDE    +                                SESE E  E 
Sbjct: 210 QKESKGEKSKKDEVICYECKRSGHIRTDCPLLKSSKKSKKKAMKATWDDSSESESEVEE- 269

Query: 121 LGLMAHS------NKEDEHDDEVTLEPPSIDELFEMFESMQNDLD 131
              MA+       +K+DEHDD+VTLEP SIDELFE FESMQNDL+
Sbjct: 270 ---MANLGLMAHSDKDDEHDDKVTLEPLSIDELFENFESMQNDLE 310

[Close]
BLAST of MELO3C020194 vs. NCBI nr
Match: gi|778688574|ref|XP_011652782.1| (PREDICTED: uncharacterized protein LOC105435092 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 2.6e-38
Identity = 101/165 (61.21%), Postives = 108/165 (65.45%), Query Frame = 1 

Query: 1   MKEQLEDESKKKKSIALKTISLEVDLEDEDDLDVDDIAYFSRKYKNFIKRKKYFKEQLST 60
           MKE LEDESKKKKSIALKTISLEVD EDED LD DDIAYFSRKYKNFIKRKKYFK+ LST
Sbjct: 217 MKEHLEDESKKKKSIALKTISLEVDPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLST 276

Query: 61  QKESKGEKSKKDEATWDD-----------------------------SSESESEVEEMEN 120
           QKESKGEKSKKDE    +                                SESE E  E 
Sbjct: 277 QKESKGEKSKKDEVICYECKRSGHIRTDCPLLKSSKKSKKKAMKATWDDSSESESEVEE- 336

Query: 121 LGLMAHS------NKEDEHDDEVTLEPPSIDELFEMFESMQNDLD 131
              MA+       +K+DEHDD+VTLEP SIDELFE FESMQNDL+
Sbjct: 337 ---MANLGLMAHSDKDDEHDDKVTLEPLSIDELFENFESMQNDLE 377

[Close]
BLAST of MELO3C020194 vs. NCBI nr
Match: gi|778665012|ref|XP_011648465.1| (PREDICTED: uncharacterized protein LOC105434474 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 2.6e-38
Identity = 101/165 (61.21%), Postives = 108/165 (65.45%), Query Frame = 1 

Query: 1   MKEQLEDESKKKKSIALKTISLEVDLEDEDDLDVDDIAYFSRKYKNFIKRKKYFKEQLST 60
           MKE LEDESKKKKSIALKTISLEVD EDED LD DDIAYFSRKYKNFIKRKKYFK+ LST
Sbjct: 217 MKEHLEDESKKKKSIALKTISLEVDPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLST 276

Query: 61  QKESKGEKSKKDEATWDD-----------------------------SSESESEVEEMEN 120
           QKESKGEKSKKDE    +                                SESE E  E 
Sbjct: 277 QKESKGEKSKKDEVICYECKRSGHIRTDCPLLKSSKKSKKKAMKATWDDSSESESEVEE- 336

Query: 121 LGLMAHS------NKEDEHDDEVTLEPPSIDELFEMFESMQNDLD 131
              MA+       +K+DEHDD+VTLEP SIDELFE FESMQNDL+
Sbjct: 337 ---MANLGLMAHSDKDDEHDDKVTLEPLSIDELFENFESMQNDLE 377

[Close]
BLAST of MELO3C020194 vs. NCBI nr
Match: gi|778730802|ref|XP_011659859.1| (PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 2.6e-38
Identity = 101/165 (61.21%), Postives = 108/165 (65.45%), Query Frame = 1 

Query: 1   MKEQLEDESKKKKSIALKTISLEVDLEDEDDLDVDDIAYFSRKYKNFIKRKKYFKEQLST 60
           MKE LEDESKKKKSIALKTISLEVD EDED LD DDIAYFSRKYKNFIKRKKYFK+ LST
Sbjct: 217 MKEHLEDESKKKKSIALKTISLEVDPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLST 276

Query: 61  QKESKGEKSKKDEATWDD-----------------------------SSESESEVEEMEN 120
           QKESKGEKSKKDE    +                                SESE E  E 
Sbjct: 277 QKESKGEKSKKDEVICYECKRSGHIRTDCPLLKSSKKSKKKAMKATWDDSSESESEVEE- 336

Query: 121 LGLMAHS------NKEDEHDDEVTLEPPSIDELFEMFESMQNDLD 131
              MA+       +K+DEHDD+VTLEP SIDELFE FESMQNDL+
Sbjct: 337 ---MANLGLMAHSDKDDEHDDKVTLEPLSIDELFENFESMQNDLE 377

[Close]
BLAST of MELO3C020194 vs. NCBI nr
Match: gi|778730824|ref|XP_011659862.1| (PREDICTED: uncharacterized protein LOC105436307, partial [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 9.2e-28
Identity = 67/73 (91.78%), Postives = 68/73 (93.15%), Query Frame = 1 

Query: 1   MKEQLEDESKKKKSIALKTISLEVDLEDEDDLDVDDIAYFSRKYKNFIKRKKYFKEQLST 60
           MKE LEDESKKKKSIALKTISLEVD EDED LD DDIAYFSRKYKNFIKRKKYFK+ LST
Sbjct: 187 MKEHLEDESKKKKSIALKTISLEVDPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLST 246

Query: 61  QKESKGEKSKKDE 74
           QKESKGEKSKKDE
Sbjct: 247 QKESKGEKSKKDE 259

The following BLAST results are available for this feature:
BLAST of MELO3C020194 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778708527|ref|XP_011656224.1|2.6e-3861.21PREDICTED: uncharacterized protein LOC105435679 [Cucumis sativus][more]
gi|778688574|ref|XP_011652782.1|2.6e-3861.21PREDICTED: uncharacterized protein LOC105435092 [Cucumis sativus][more]
gi|778665012|ref|XP_011648465.1|2.6e-3861.21PREDICTED: uncharacterized protein LOC105434474 [Cucumis sativus][more]
gi|778730802|ref|XP_011659859.1|2.6e-3861.21PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus][more]
gi|778730824|ref|XP_011659862.1|9.2e-2891.78PREDICTED: uncharacterized protein LOC105436307, partial [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020194T1MELO3C020194T1mRNA