MELO3C020176 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020176
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein, Ty3-gypsy subclass, putative
Location	chr10 : 8571396 .. 8571839 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGAAGTCGCTGGGCCAGTAGGCAAGTTGGGAAGTTTAATTGCACATTTCCAAGTGCGGCCTATTTTAATAGATCGTATTATTAAAGCCCAGCTAGATGATGCAATGCTGAGGAAGTTAGCAGAAGAGGTAAGACAAAACCAAAGATTGAATTATAGCTTGAGGGGTGATAGTGCCTTAATGAAATATGATAGGTTGTGTGTACCCAGTGACCAAGCGATTAAAGATCAAAATAATATTTTAGAGGAAGCACATAGTTCTGCATATGCAATGCATCCTGGTAGTACGAAAATGTATAGAACTTTGAAGAAACACTATTGGTGGCCAGGTATGAAGCGTGAGATTGCAGATTATGTGGCTAAGTGTTTGATATGTCAGCAAGTTAAACCTGAACATCAGAGACCAACGGGACTCCTAAATCCTCTTCCAGTGCTGGAATGA

mRNA sequence

ATGGGTGAAGTCGCTGGGCCAGTAGGCAAGTTGGGAAGTTTAATTGCACATTTCCAAGTGCGGCCTATTTTAATAGATCGTATTATTAAAGCCCAGCTAGATGATGCAATGCTGAGGAAGTTAGCAGAAGAGGTAAGACAAAACCAAAGATTGAATTATAGCTTGAGGGGTGATAGTGCCTTAATGAAATATGATAGGTTGTGTGTACCCAGTGACCAAGCGATTAAAGATCAAAATAATATTTTAGAGGAAGCACATAGTTCTGCATATGCAATGCATCCTGGTAGTACGAAAATGTATAGAACTTTGAAGAAACACTATTGGTGGCCAGGTATGAAGCGTGAGATTGCAGATTATGTGGCTAAGTGTTTGATATGTCAGCAAGTTAAACCTGAACATCAGAGACCAACGGGACTCCTAAATCCTCTTCCAGTGCTGGAATGA

Coding sequence (CDS)

ATGGGTGAAGTCGCTGGGCCAGTAGGCAAGTTGGGAAGTTTAATTGCACATTTCCAAGTGCGGCCTATTTTAATAGATCGTATTATTAAAGCCCAGCTAGATGATGCAATGCTGAGGAAGTTAGCAGAAGAGGTAAGACAAAACCAAAGATTGAATTATAGCTTGAGGGGTGATAGTGCCTTAATGAAATATGATAGGTTGTGTGTACCCAGTGACCAAGCGATTAAAGATCAAAATAATATTTTAGAGGAAGCACATAGTTCTGCATATGCAATGCATCCTGGTAGTACGAAAATGTATAGAACTTTGAAGAAACACTATTGGTGGCCAGGTATGAAGCGTGAGATTGCAGATTATGTGGCTAAGTGTTTGATATGTCAGCAAGTTAAACCTGAACATCAGAGACCAACGGGACTCCTAAATCCTCTTCCAGTGCTGGAATGA

Protein sequence

MGEVAGPVGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQNNILEEAHSSAYAMHPGSTKMYRTLKKHYWWPGMKREIADYVAKCLICQQVKPEHQRPTGLLNPLPVLE*

Homology

[Close]

BLAST of MELO3C020176 vs. TrEMBL
Match: M5XLP5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb019121mg PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 4.5e-38
Identity = 80/140 (57.14%), Postives = 104/140 (74.29%), Query Frame = 1


Query: 8   VGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRL 67
           V   G+L+A   VRP+L++RI+ AQ  D ++  L  EV    R + S+R D ALM  +RL
Sbjct: 62  VDNQGALLATLHVRPVLVERILAAQSQDPLICTLRVEVANGDRTDCSVRNDGALMVGNRL 121

Query: 68  CVPSDQAIKDQNNILEEAHSSAYAMHPGSTKMYRTLKKHYWWPGMKREIADYVAKCLICQ 127
            VP+D+A+K +  ILEEAH SA+AMHPGSTKMY TL++HYWWP MK+EIA+YV +CLICQ
Sbjct: 122 YVPNDEALKRE--ILEEAHESAFAMHPGSTKMYHTLREHYWWPFMKKEIAEYVRRCLICQ 181

Query: 128 QVKPEHQRPTGLLNPLPVLE 148
           QVK E Q+P+GLL PLP+ E
Sbjct: 182 QVKAERQKPSGLLQPLPIPE 199

[Close]

BLAST of MELO3C020176 vs. TrEMBL
Match: M5WLY8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021229mg PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.0e-37
Identity = 79/140 (56.43%), Postives = 104/140 (74.29%), Query Frame = 1


Query: 8   VGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRL 67
           V   G+L+A   VRP+L++RI+ AQ  D ++  L  EV    R + S+R D ALM  +RL
Sbjct: 704 VDNQGALLATLHVRPVLVERILAAQSQDPLICTLRVEVANGDRTDCSVRNDGALMVGNRL 763

Query: 68  CVPSDQAIKDQNNILEEAHSSAYAMHPGSTKMYRTLKKHYWWPGMKREIADYVAKCLICQ 127
            VP+D+A+K +  ILEEAH SA+AMHPGSTKMY TL++HYWWP MK++IA+YV +CLICQ
Sbjct: 764 YVPNDEALKRE--ILEEAHESAFAMHPGSTKMYHTLREHYWWPFMKKQIAEYVRRCLICQ 823

Query: 128 QVKPEHQRPTGLLNPLPVLE 148
           QVK E Q+P+GLL PLP+ E
Sbjct: 824 QVKAERQKPSGLLQPLPIPE 841

[Close]

BLAST of MELO3C020176 vs. TrEMBL
Match: M5Y103_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016115mg PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.0e-37
Identity = 79/140 (56.43%), Postives = 104/140 (74.29%), Query Frame = 1


Query: 8   VGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRL 67
           V   G+L+A   VRP+L++RI+ AQ  D ++  L  EV    R + S+R D ALM  ++L
Sbjct: 779 VDNQGALLATLHVRPVLVERILAAQSQDPLICTLRVEVANGDRTDCSVRNDGALMVGNKL 838

Query: 68  CVPSDQAIKDQNNILEEAHSSAYAMHPGSTKMYRTLKKHYWWPGMKREIADYVAKCLICQ 127
            VP+D+A+K +  ILEEAH SA+AMHPGSTKMY TL++HYWWP MK+EIA+YV +CLICQ
Sbjct: 839 YVPNDEALKRE--ILEEAHESAFAMHPGSTKMYHTLREHYWWPFMKKEIAEYVRRCLICQ 898

Query: 128 QVKPEHQRPTGLLNPLPVLE 148
           QVK E Q+P+GLL PLP+ E
Sbjct: 899 QVKAERQKPSGLLQPLPIPE 916

[Close]

BLAST of MELO3C020176 vs. TrEMBL
Match: Q2MCK3_CITSI (Polyprotein (Fragment) OS=Citrus sinensis GN=pol PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.8e-37
Identity = 75/135 (55.56%), Postives = 103/135 (76.30%), Query Frame = 1


Query: 13  SLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSD 72
           +LIA+F+VRP LID++ + Q  D  L KL E V+++ R ++++R +  L+  +RLCVP  
Sbjct: 294 ALIANFRVRPTLIDKVHQMQDQDLQLLKLKENVQKDLRTDFAVRDNGVLVMGNRLCVPDI 353

Query: 73  QAIKDQNNILEEAHSSAYAMHPGSTKMYRTLKKHYWWPGMKREIADYVAKCLICQQVKPE 132
           + +K +  I+EEAH SAYAMHPGSTKMYRTL+ HYWW GMKREIA++V++CL+CQQ+K E
Sbjct: 354 KELKKE--IMEEAHCSAYAMHPGSTKMYRTLRDHYWWQGMKREIAEFVSRCLVCQQIKAE 413

Query: 133 HQRPTGLLNPLPVLE 148
           HQRP G   PLP+ E
Sbjct: 414 HQRPAGFSQPLPIPE 426

[Close]

BLAST of MELO3C020176 vs. TrEMBL
Match: M5WVT3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb017493mg PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 7.2e-36
Identity = 77/140 (55.00%), Postives = 103/140 (73.57%), Query Frame = 1


Query: 8   VGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRL 67
           V   G+L+A   VRP+L++RI+ AQ  D ++  L  EV    + + S+R D ALM  +RL
Sbjct: 158 VDNQGALLATLHVRPVLVERILAAQSQDPLICTLRVEVANGDKTDCSVRNDGALMVGNRL 217

Query: 68  CVPSDQAIKDQNNILEEAHSSAYAMHPGSTKMYRTLKKHYWWPGMKREIADYVAKCLICQ 127
            VP+D+A+K +  ILEEAH SA+AM+PGSTKMY TL++HYWWP MK+EIA+YV +CLICQ
Sbjct: 218 YVPNDEALKRE--ILEEAHESAFAMYPGSTKMYHTLREHYWWPFMKKEIAEYVRRCLICQ 277

Query: 128 QVKPEHQRPTGLLNPLPVLE 148
           QVK E Q+ +GLL PLP+ E
Sbjct: 278 QVKAERQKLSGLLQPLPIPE 295

[Close]

BLAST of MELO3C020176 vs. NCBI nr
Match: gi|596074808|ref|XP_007221234.1| (hypothetical protein PRUPE_ppb019121mg [Prunus persica])

HSP 1 Score: 165.6 bits (418), Expect = 6.5e-38
Identity = 80/140 (57.14%), Postives = 104/140 (74.29%), Query Frame = 1


Query: 8   VGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRL 67
           V   G+L+A   VRP+L++RI+ AQ  D ++  L  EV    R + S+R D ALM  +RL
Sbjct: 62  VDNQGALLATLHVRPVLVERILAAQSQDPLICTLRVEVANGDRTDCSVRNDGALMVGNRL 121

Query: 68  CVPSDQAIKDQNNILEEAHSSAYAMHPGSTKMYRTLKKHYWWPGMKREIADYVAKCLICQ 127
            VP+D+A+K +  ILEEAH SA+AMHPGSTKMY TL++HYWWP MK+EIA+YV +CLICQ
Sbjct: 122 YVPNDEALKRE--ILEEAHESAFAMHPGSTKMYHTLREHYWWPFMKKEIAEYVRRCLICQ 181

Query: 128 QVKPEHQRPTGLLNPLPVLE 148
           QVK E Q+P+GLL PLP+ E
Sbjct: 182 QVKAERQKPSGLLQPLPIPE 199

[Close]

BLAST of MELO3C020176 vs. NCBI nr
Match: gi|595885005|ref|XP_007213082.1| (hypothetical protein PRUPE_ppa021229mg [Prunus persica])

HSP 1 Score: 164.5 bits (415), Expect = 1.4e-37
Identity = 79/140 (56.43%), Postives = 104/140 (74.29%), Query Frame = 1


Query: 8   VGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRL 67
           V   G+L+A   VRP+L++RI+ AQ  D ++  L  EV    R + S+R D ALM  +RL
Sbjct: 704 VDNQGALLATLHVRPVLVERILAAQSQDPLICTLRVEVANGDRTDCSVRNDGALMVGNRL 763

Query: 68  CVPSDQAIKDQNNILEEAHSSAYAMHPGSTKMYRTLKKHYWWPGMKREIADYVAKCLICQ 127
            VP+D+A+K +  ILEEAH SA+AMHPGSTKMY TL++HYWWP MK++IA+YV +CLICQ
Sbjct: 764 YVPNDEALKRE--ILEEAHESAFAMHPGSTKMYHTLREHYWWPFMKKQIAEYVRRCLICQ 823

Query: 128 QVKPEHQRPTGLLNPLPVLE 148
           QVK E Q+P+GLL PLP+ E
Sbjct: 824 QVKAERQKPSGLLQPLPIPE 841

[Close]

BLAST of MELO3C020176 vs. NCBI nr
Match: gi|596224288|ref|XP_007224141.1| (hypothetical protein PRUPE_ppa016115mg [Prunus persica])

HSP 1 Score: 164.5 bits (415), Expect = 1.4e-37
Identity = 79/140 (56.43%), Postives = 104/140 (74.29%), Query Frame = 1


Query: 8   VGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRL 67
           V   G+L+A   VRP+L++RI+ AQ  D ++  L  EV    R + S+R D ALM  ++L
Sbjct: 779 VDNQGALLATLHVRPVLVERILAAQSQDPLICTLRVEVANGDRTDCSVRNDGALMVGNKL 838

Query: 68  CVPSDQAIKDQNNILEEAHSSAYAMHPGSTKMYRTLKKHYWWPGMKREIADYVAKCLICQ 127
            VP+D+A+K +  ILEEAH SA+AMHPGSTKMY TL++HYWWP MK+EIA+YV +CLICQ
Sbjct: 839 YVPNDEALKRE--ILEEAHESAFAMHPGSTKMYHTLREHYWWPFMKKEIAEYVRRCLICQ 898

Query: 128 QVKPEHQRPTGLLNPLPVLE 148
           QVK E Q+P+GLL PLP+ E
Sbjct: 899 QVKAERQKPSGLLQPLPIPE 916

[Close]

BLAST of MELO3C020176 vs. NCBI nr
Match: gi|85813755|emb|CAJ65807.1| (polyprotein, partial [Citrus sinensis])

HSP 1 Score: 162.5 bits (410), Expect = 5.5e-37
Identity = 75/135 (55.56%), Postives = 103/135 (76.30%), Query Frame = 1


Query: 13  SLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSD 72
           +LIA+F+VRP LID++ + Q  D  L KL E V+++ R ++++R +  L+  +RLCVP  
Sbjct: 294 ALIANFRVRPTLIDKVHQMQDQDLQLLKLKENVQKDLRTDFAVRDNGVLVMGNRLCVPDI 353

Query: 73  QAIKDQNNILEEAHSSAYAMHPGSTKMYRTLKKHYWWPGMKREIADYVAKCLICQQVKPE 132
           + +K +  I+EEAH SAYAMHPGSTKMYRTL+ HYWW GMKREIA++V++CL+CQQ+K E
Sbjct: 354 KELKKE--IMEEAHCSAYAMHPGSTKMYRTLRDHYWWQGMKREIAEFVSRCLVCQQIKAE 413

Query: 133 HQRPTGLLNPLPVLE 148
           HQRP G   PLP+ E
Sbjct: 414 HQRPAGFSQPLPIPE 426

[Close]

BLAST of MELO3C020176 vs. NCBI nr
Match: gi|659129924|ref|XP_008464914.1| (PREDICTED: uncharacterized protein LOC103502672 [Cucumis melo])

HSP 1 Score: 161.8 bits (408), Expect = 9.4e-37
Identity = 79/96 (82.29%), Postives = 85/96 (88.54%), Query Frame = 1


Query: 27  RIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQNNILEEAH 86
           RIIK QLDDAMLRKLA+EVRQNQRLNYSLRGD ALMKYDRLCVPSDQAIKD   ILEEAH
Sbjct: 157 RIIKVQLDDAMLRKLAKEVRQNQRLNYSLRGDGALMKYDRLCVPSDQAIKD---ILEEAH 216

Query: 87  SSAYAMHPGSTKMYRTLKKHYWWPGMKREIADYVAK 123
           SS YAMHPGSTK+YRTLKKHYWWP ++R+   Y+ K
Sbjct: 217 SSTYAMHPGSTKIYRTLKKHYWWPDLRRQQDFYLVK 249

The following BLAST results are available for this feature:

BLAST of MELO3C020176 vs. TrEMBL


Match Name	E-value	Identity	Description
M5XLP5_PRUPE	4.5e-38	57.14	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb019121mg PE=4 SV=1	[more]
M5WLY8_PRUPE	1.0e-37	56.43	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021229mg PE=4 SV=1	[more]
M5Y103_PRUPE	1.0e-37	56.43	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016115mg PE=4 SV=1	[more]
Q2MCK3_CITSI	3.8e-37	55.56	Polyprotein (Fragment) OS=Citrus sinensis GN=pol PE=4 SV=1	[more]
M5WVT3_PRUPE	7.2e-36	55.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb017493mg PE=4 SV=1	[more]

BLAST of MELO3C020176 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|596074808\|ref\|XP_007221234.1\|	6.5e-38	57.14	hypothetical protein PRUPE_ppb019121mg [Prunus persica]	[more]
gi\|595885005\|ref\|XP_007213082.1\|	1.4e-37	56.43	hypothetical protein PRUPE_ppa021229mg [Prunus persica]	[more]
gi\|596224288\|ref\|XP_007224141.1\|	1.4e-37	56.43	hypothetical protein PRUPE_ppa016115mg [Prunus persica]	[more]
gi\|85813755\|emb\|CAJ65807.1\|	5.5e-37	55.56	polyprotein, partial [Citrus sinensis]	[more]
gi\|659129924\|ref\|XP_008464914.1\|	9.4e-37	82.29	PREDICTED: uncharacterized protein LOC103502672 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020176T1	MELO3C020176T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 14..147 score: 1.5
None	No IPR available	PANTHER	PTHR24559:SF207	SUBFAMILY NOT NAMED	coord: 14..147 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020176	Wax gourd	mewgoB073
MELO3C020176	Cucumber (Gy14) v1	cgymeB241
MELO3C020176	Cucurbita maxima (Rimu)	cmameB642
MELO3C020176	Cucurbita maxima (Rimu)	cmameB643
MELO3C020176	Cucurbita moschata (Rifu)	cmomeB633
MELO3C020176	Cucurbita moschata (Rifu)	cmomeB634
MELO3C020176	Wild cucumber (PI 183967)	cpimeB370
MELO3C020176	Cucumber (Chinese Long) v2	cumeB369
MELO3C020176	Watermelon (Charleston Gray)	mewcgB069
MELO3C020176	Watermelon (97103) v1	mewmB056
MELO3C020176	Cucurbita pepo (Zucchini)	cpemeB365
MELO3C020176	Bottle gourd (USVL1VR-Ls)	lsimeB282
MELO3C020176	Cucumber (Gy14) v2	cgybmeB320
MELO3C020176	Silver-seed gourd	carmeB0656
MELO3C020176	Silver-seed gourd	carmeB0895
MELO3C020176	Cucumber (Chinese Long) v3	cucmeB382
MELO3C020176	Watermelon (97103) v2	mewmbB068