MELO3C020058 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020058
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Non-neuronal cytoplasmic intermediate filament protein
Location	chr10 : 11293535 .. 11293720 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGAATGGGAACGAGGAGTTTCCATCCATGTACAGCCAAGGGATTGACATGTTCCAGGAGGATGTACGCGCATCACGATCTTCTCATGCATCAGAGGGTAGGGTCGGATCGAGCAAATCAAAGAGGAAGAGGGAAAGCCAGCGGGAGGGCGAGATTGAAGTCATACATATGGCCCTCGAGTGA

mRNA sequence

ATGCCGAATGGGAACGAGGAGTTTCCATCCATGTACAGCCAAGGGATTGACATGTTCCAGGAGGATGTACGCGCATCACGATCTTCTCATGCATCAGAGGGTAGGGTCGGATCGAGCAAATCAAAGAGGAAGAGGGAAAGCCAGCGGGAGGGCGAGATTGAAGTCATACATATGGCCCTCGAGTGA

Coding sequence (CDS)

ATGCCGAATGGGAACGAGGAGTTTCCATCCATGTACAGCCAAGGGATTGACATGTTCCAGGAGGATGTACGCGCATCACGATCTTCTCATGCATCAGAGGGTAGGGTCGGATCGAGCAAATCAAAGAGGAAGAGGGAAAGCCAGCGGGAGGGCGAGATTGAAGTCATACATATGGCCCTCGAGTGA

Protein sequence

MPNGNEEFPSMYSQGIDMFQEDVRASRSSHASEGRVGSSKSKRKRESQREGEIEVIHMALE*

Homology

[Close]

BLAST of MELO3C020058 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-13
Identity = 38/61 (62.30%), Postives = 51/61 (83.61%), Query Frame = 1


Query: 1   MPNGNEEFPSMYSQGIDMFQEDVRASRSSHASEGRVGSSKSKRKRESQREGEIEVIHMAL 60
           M +GNE+FP +YS+G+D+ Q+DVRASR S ASEG+ GSS SKRKR SQR+ ++E IH+AL
Sbjct: 483 MGDGNEDFPPVYSRGVDILQDDVRASRPSRASEGKTGSSGSKRKRGSQRDFDVEAIHLAL 542

Query: 61  E 62
           +
Sbjct: 543 D 543

[Close]

BLAST of MELO3C020058 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 83.2 bits (204), Expect = 1.8e-13
Identity = 38/61 (62.30%), Postives = 51/61 (83.61%), Query Frame = 1


Query: 1   MPNGNEEFPSMYSQGIDMFQEDVRASRSSHASEGRVGSSKSKRKRESQREGEIEVIHMAL 60
           M +GNE+FP +YS+G+D+ Q+DVRASR S ASEG+ GSS SKRKR SQR+ ++E IH+AL
Sbjct: 483 MGDGNEDFPPVYSRGVDILQDDVRASRPSRASEGKTGSSGSKRKRGSQRDFDVEAIHLAL 542

Query: 61  E 62
           +
Sbjct: 543 D 543

[Close]

BLAST of MELO3C020058 vs. NCBI nr
Match: gi|659093712|ref|XP_008447677.1| (PREDICTED: uncharacterized protein LOC103490086 [Cucumis melo])

HSP 1 Score: 81.3 bits (199), Expect = 6.7e-13
Identity = 40/61 (65.57%), Postives = 49/61 (80.33%), Query Frame = 1


Query: 1   MPNGNEEFPSMYSQGIDMFQEDVRASRSSHASEGRVGSSKSKRKRESQREGEIEVIHMAL 60
           M +GNEEF S+YSQGIDM QEDV AS+ +H S  R  SS+ KRKR SQ++GEI+VIHMAL
Sbjct: 217 MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMAL 276

Query: 61  E 62
           +
Sbjct: 277 K 277

The following BLAST results are available for this feature:

BLAST of MELO3C020058 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBB2_CUCME	1.2e-13	62.30	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of MELO3C020058 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307135889\|gb\|ADN33754.1\|	1.8e-13	62.30	retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|659093712\|ref\|XP_008447677.1\|	6.7e-13	65.57	PREDICTED: uncharacterized protein LOC103490086 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020058T1	MELO3C020058T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020058	Cucurbita maxima (Rimu)	cmameB664
MELO3C020058	Cucurbita moschata (Rifu)	cmomeB657
MELO3C020058	Wild cucumber (PI 183967)	cpimeB373
MELO3C020058	Cucumber (Chinese Long) v2	cumeB376
MELO3C020058	Watermelon (Charleston Gray)	mewcgB045
MELO3C020058	Watermelon (97103) v1	mewmB079
MELO3C020058	Cucurbita pepo (Zucchini)	cpemeB388
MELO3C020058	Bottle gourd (USVL1VR-Ls)	lsimeB084
MELO3C020058	Cucumber (Gy14) v2	cgybmeB313
MELO3C020058	Cucumber (Chinese Long) v3	cucmeB373
MELO3C020058	Watermelon (97103) v2	mewmbB049