MELO3C020045 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020045
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Ras-GTPase-activating protein-binding protein
Location	chr10 : 11627727 .. 11628585 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGATTTATTTAAAATCAAACCTTTTCTTTTCGTCAAGGCTTGAATAAATAAAAATGTTTTTTATTTACATTGGAGTATTGTAGATCTAAGATTTTGATTGATTGTTGGGCTTGTTCTTCTTCCTTCTTGATCGTTAGGGTTTAAGGGTTTCCGATAATGGACACGCCCTTTCACATTGAAAATAGGACTGAAGTTTCTATTTATCCTTTCCTCCTTATATGTATAGATTTTGTTTTGTTGTTGCTTCTGCTTAGAGGTGTCACGAAACTTTGTCAGAATTGTCCGTTTGCAGTATCTAGATATTTCATGAATTGAAACAGAATCTTTTGATCATGAATCCTACAGACAATTGTTGTATTTTGTGATTTTTTTAATCAATGTTTCAGTTATTATTTCTTTTTTTCTGTTTTCAATAGTTTCTACCTTTTGTAGGTAGTAAGATTAATAATACTACTGTGTCAACCTTTCTATACCACTTGTTTCTATGATTTGAATGTGGTAAAGGCTCGAATAAGCAGCCTTTATGCGAGGGATGTGGGCAAGCTTCTATTAATAATTGATTCGGTGCCGTTTTTCAATTATAAACTTTTTCCATCTCTTTGATTCATGCTAATCACCCCATCCCATGTTCATCAGGTTCTTTGTTGGGCAGTACTATCAGGTTCTTCAGCAGCAACCTGACTATGTTTATCAGTTCCATTCTCATGCCTGTACTATGATCCGGATTGATGGCAATTTCAGAGAGTCCACCACTGCAATGCTGGTATTTTTCTCTTTCATGTTCTCCTTTTTCCTTTTTGCCTACTTTTTGCTGTGGGCTGTATGTCAGAGCACAATCCGAGGATTGTTTGTTTGA

mRNA sequence

ATGTGATTTATTTAAAATCAAACCTTTTCTTTTCGTCAAGGCTTGAATAAATAAAAATGTTTTTTATTTACATTGGAGTATTGTAGATCTAAGATTTTGATTGATTGTTGGGCTTGTTCTTCTTCCTTCTTGATCGTTAGGGTTTAAGGGTTTCCGATAATGGACACGCCCTTTCACATTGAAAATAGGACTGAAGTTTCTATTTATCCTTTCCTCCTTATATGTATAGATTTTGTTTTGTTGTTGCTTCTGCTTAGAGGTGTCACGAAACTTTGTCAGAATTGTCCGTTTGCAGTATCTAGATATTTCATGAATTGAAACAGAATCTTTTGATCATGAATCCTACAGACAATTGTTGTATTTTGTGATTTTTTTAATCAATGTTTCAGTTATTATTTCTTTTTTTCTGTTTTCAATAGTTTCTACCTTTTGTAGGTAGTAAGATTAATAATACTACTGTGTCAACCTTTCTATACCACTTGTTTCTATGATTTGAATGTGGTAAAGGCTCGAATAAGCAGCCTTTATGCGAGGGATGTGGGCAAGCTTCTATTAATAATTGATTCGGTGCCGTTTTTCAATTATAAACTTTTTCCATCTCTTTGATTCATGCTAATCACCCCATCCCATGTTCATCAGGTTCTTTGTTGGGCAGTACTATCAGGTTCTTCAGCAGCAACCTGACTATGTTTATCAGTTCCATTCTCATGCCTGTACTATGATCCGGATTGATGGCAATTTCAGAGAGTCCACCACTGCAATGCTGAGCACAATCCGAGGATTGTTTGTTTGA

Coding sequence (CDS)

ATGTTCATCAGGTTCTTTGTTGGGCAGTACTATCAGGTTCTTCAGCAGCAACCTGACTATGTTTATCAGTTCCATTCTCATGCCTGTACTATGATCCGGATTGATGGCAATTTCAGAGAGTCCACCACTGCAATGCTGAGCACAATCCGAGGATTGTTTGTTTGA

Protein sequence

MFIRFFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAMLSTIRGLFV*

Homology

[Close]

BLAST of MELO3C020045 vs. TrEMBL
Match: B3U2A1_CUCSA (Nuclear transport family protein OS=Cucumis sativus PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.2e-12
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 1


Query: 5   FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 47
           +FVGQYYQVLQQQPDYVYQF+S A TMIRIDGNFRES TAML
Sbjct: 101 YFVGQYYQVLQQQPDYVYQFYSDASTMIRIDGNFRESATAML 142

[Close]

BLAST of MELO3C020045 vs. TrEMBL
Match: A0A0A0L6Y9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134580 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.2e-12
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 1


Query: 5  FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 47
          +FVGQYYQVLQQQPDYVYQF+S A TMIRIDGNFRES TAML
Sbjct: 17 YFVGQYYQVLQQQPDYVYQFYSDASTMIRIDGNFRESATAML 58

[Close]

BLAST of MELO3C020045 vs. TrEMBL
Match: M5Y3K1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005170mg PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-09
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 1


Query: 5  FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 47
          +FVGQYYQVLQQQPD V+QF+S A TM+RIDGN RE+ TAML
Sbjct: 17 YFVGQYYQVLQQQPDLVHQFYSDASTMLRIDGNTRETATAML 58

[Close]

BLAST of MELO3C020045 vs. TrEMBL
Match: V4S9I7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004887mg PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-09
Identity = 31/42 (73.81%), Postives = 38/42 (90.48%), Query Frame = 1


Query: 5  FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 47
          +FVGQYYQVLQQQPD+V+QF+S A TM+RIDG+ RE+ TAML
Sbjct: 17 YFVGQYYQVLQQQPDFVHQFYSDASTMLRIDGDTRETATAML 58

[Close]

BLAST of MELO3C020045 vs. TrEMBL
Match: V4RHV0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004887mg PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-09
Identity = 31/42 (73.81%), Postives = 38/42 (90.48%), Query Frame = 1


Query: 5  FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 47
          +FVGQYYQVLQQQPD+V+QF+S A TM+RIDG+ RE+ TAML
Sbjct: 17 YFVGQYYQVLQQQPDFVHQFYSDASTMLRIDGDTRETATAML 58

[Close]

BLAST of MELO3C020045 vs. TAIR10
Match: AT5G43960.1 (AT5G43960.1 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain)

HSP 1 Score: 55.5 bits (132), Expect = 1.2e-08
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 1


Query: 5  FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 47
          +FVGQYYQVLQQQPD ++QF+S     IRIDG+  E+  ++L
Sbjct: 14 YFVGQYYQVLQQQPDLIHQFYSEPSRAIRIDGDSTETANSLL 55

[Close]

BLAST of MELO3C020045 vs. NCBI nr
Match: gi|168988195|gb|ACA35266.1| (nuclear transport family protein [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-12
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 1


Query: 5   FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 47
           +FVGQYYQVLQQQPDYVYQF+S A TMIRIDGNFRES TAML
Sbjct: 101 YFVGQYYQVLQQQPDYVYQFYSDASTMIRIDGNFRESATAML 142

[Close]

BLAST of MELO3C020045 vs. NCBI nr
Match: gi|449432500|ref|XP_004134037.1| (PREDICTED: putative G3BP-like protein [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-12
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 1


Query: 5  FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 47
          +FVGQYYQVLQQQPDYVYQF+S A TMIRIDGNFRES TAML
Sbjct: 17 YFVGQYYQVLQQQPDYVYQFYSDASTMIRIDGNFRESATAML 58

[Close]

BLAST of MELO3C020045 vs. NCBI nr
Match: gi|659076019|ref|XP_008438457.1| (PREDICTED: putative G3BP-like protein [Cucumis melo])

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-12
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 1


Query: 5  FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 47
          +FVGQYYQVLQQQPDYVYQF+S A TMIRIDGNFRES TAML
Sbjct: 17 YFVGQYYQVLQQQPDYVYQFYSDASTMIRIDGNFRESATAML 58

[Close]

BLAST of MELO3C020045 vs. NCBI nr
Match: gi|1009139985|ref|XP_015887404.1| (PREDICTED: putative G3BP-like protein [Ziziphus jujuba])

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-10
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 1


Query: 5  FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 47
          +FVGQYYQVLQQQPD+VYQF+S A TM+RIDGN RE+ TAML
Sbjct: 17 YFVGQYYQVLQQQPDFVYQFYSDASTMLRIDGNTRETATAML 58

[Close]

BLAST of MELO3C020045 vs. NCBI nr
Match: gi|645234930|ref|XP_008224038.1| (PREDICTED: putative G3BP-like protein [Prunus mume])

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-09
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 1


Query: 5  FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 47
          +FVGQYYQVLQQQPD V+QF+S A TM+RIDGN RE+ TAML
Sbjct: 17 YFVGQYYQVLQQQPDLVHQFYSDASTMLRIDGNTRETATAML 58

The following BLAST results are available for this feature:

BLAST of MELO3C020045 vs. TrEMBL


Match Name	E-value	Identity	Description
B3U2A1_CUCSA	1.2e-12	88.10	Nuclear transport family protein OS=Cucumis sativus PE=4 SV=1	[more]
A0A0A0L6Y9_CUCSA	1.2e-12	88.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134580 PE=4 SV=1	[more]
M5Y3K1_PRUPE	1.3e-09	76.19	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005170mg PE=4 SV=1	[more]
V4S9I7_9ROSI	1.6e-09	73.81	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004887mg PE=4 SV=1	[more]
V4RHV0_9ROSI	1.6e-09	73.81	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004887mg PE=4 SV=1	[more]

BLAST of MELO3C020045 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43960.1	1.2e-08	57.14	Nuclear transport factor 2 (NTF2) family protein with RNA binding (R...	[more]

BLAST of MELO3C020045 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|168988195\|gb\|ACA35266.1\|	1.7e-12	88.10	nuclear transport family protein [Cucumis sativus]	[more]
gi\|449432500\|ref\|XP_004134037.1\|	1.7e-12	88.10	PREDICTED: putative G3BP-like protein [Cucumis sativus]	[more]
gi\|659076019\|ref\|XP_008438457.1\|	1.7e-12	88.10	PREDICTED: putative G3BP-like protein [Cucumis melo]	[more]
gi\|1009139985\|ref\|XP_015887404.1\|	1.6e-10	78.57	PREDICTED: putative G3BP-like protein [Ziziphus jujuba]	[more]
gi\|645234930\|ref\|XP_008224038.1\|	1.8e-09	76.19	PREDICTED: putative G3BP-like protein [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006810	transport
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU55152	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020045T1	MELO3C020045T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU55152	MU55152	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10693	RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN	coord: 5..46 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020045	Cucumber (Chinese Long) v2	cumeB373
MELO3C020045	Watermelon (Charleston Gray)	mewcgB045
MELO3C020045	Watermelon (97103) v1	mewmB079
MELO3C020045	Cucumber (Gy14) v2	cgybmeB313
MELO3C020045	Cucumber (Chinese Long) v3	cucmeB373
MELO3C020045	Watermelon (97103) v2	mewmbB049
MELO3C020045	Wax gourd	mewgoB087
MELO3C020045	Cucumber (Gy14) v1	cgymeB606
MELO3C020045	Wild cucumber (PI 183967)	cpimeB373