MELO3C020043 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C020043
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPHD finger protein MALE STERILITY 1
Locationchr10 : 11670890 .. 11671240 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGACGGACGTGATTGGGAAGAAGAGGAGGAGGGGAGGCGGAGGGGGAGAGAGGGTGTTTGGATTCAAAAGCTTTGGGGAGAATGGGCATCCGGCAGAGCTTGTGGGCAGATTCCGAGAGAATGTAGAGGCACTGCTAGGGTTTGGGAAGTGGGAGAGCGGAGAGTGCAGTGGCGAGGGGTTCCGGTGTTGGTCGTTTCGGCTGCAGGTTCAGCGGCAGCCGCCTGTCCATGTTGTGCTGTTTGTGCTGGAGGAGGCAGTGGAGTCTTGCACCGTGGCATCCAGGCAGTGTAAACAATGTCAGTATGTTGGTAAGGTTTCGAAAGCAAATATTATGAATCTTTTGTAG

mRNA sequence

ATGACGACGGACGTGATTGGGAAGAAGAGGAGGAGGGGAGGCGGAGGGGGAGAGAGGGTGTTTGGATTCAAAAGCTTTGGGGAGAATGGGCATCCGGCAGAGCTTGTGGGCAGATTCCGAGAGAATGTAGAGGCACTGCTAGGGTTTGGGAAGTGGGAGAGCGGAGAGTGCAGTGGCGAGGGGTTCCGGTGTTGGTCGTTTCGGCTGCAGGTTCAGCGGCAGCCGCCTGTCCATGTTGTGCTGTTTGTGCTGGAGGAGGCAGTGGAGTCTTGCACCGTGGCATCCAGGCAGTGTAAACAATGTCAGTATGTTGGTAAGGTTTCGAAAGCAAATATTATGAATCTTTTGTAG

Coding sequence (CDS)

ATGACGACGGACGTGATTGGGAAGAAGAGGAGGAGGGGAGGCGGAGGGGGAGAGAGGGTGTTTGGATTCAAAAGCTTTGGGGAGAATGGGCATCCGGCAGAGCTTGTGGGCAGATTCCGAGAGAATGTAGAGGCACTGCTAGGGTTTGGGAAGTGGGAGAGCGGAGAGTGCAGTGGCGAGGGGTTCCGGTGTTGGTCGTTTCGGCTGCAGGTTCAGCGGCAGCCGCCTGTCCATGTTGTGCTGTTTGTGCTGGAGGAGGCAGTGGAGTCTTGCACCGTGGCATCCAGGCAGTGTAAACAATGTCAGTATGTTGGTAAGGTTTCGAAAGCAAATATTATGAATCTTTTGTAG

Protein sequence

MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVGKVSKANIMNLL*
Homology
[Close]
BLAST of MELO3C020043 vs. Swiss-Prot
Match: MS1_ARATH (PHD finger protein MALE STERILITY 1 OS=Arabidopsis thaliana GN=MS1 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-15
Identity = 49/102 (48.04%), Postives = 65/102 (63.73%), Query Frame = 1 

Query: 6   IGKKRRRGGGGGERVFGFKSFGENGHPAELVG-RFRENVEALLGFGKWESGECSGEGFRC 65
           I KKR+RG     RVF  K+FGE+GHPAE+    FR+N+  LL FG +ES    G     
Sbjct: 13  IPKKRKRGES---RVFRLKTFGESGHPAEMNELSFRDNLAKLLEFGHFESSGLMGS---- 72

Query: 66  WSFRLQVQRQP-PVHVVLFVLEEAVESCTVASRQCKQCQYVG 106
           WSF+L++QR P P++V+LFV+EE +E+    + +C  CQYVG
Sbjct: 73  WSFQLEIQRNPNPLYVLLFVVEEPIEAS--LNLRCNHCQYVG 105

[Close]
BLAST of MELO3C020043 vs. Swiss-Prot
Match: PTC1_ORYSJ (PHD finger protein PERSISTENT TAPETAL CELL 1 OS=Oryza sativa subsp. japonica GN=PTC1 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.4e-13
Identity = 45/102 (44.12%), Postives = 60/102 (58.82%), Query Frame = 1 

Query: 6   IGKKRRRGGGGGERVFGFKSFGENGHPAELVGR--FRENVEALLGFGKWESGECSGEGFR 65
           +G  RRR  G  E +F F++F + G+PA   G   FR+NV  LLGF   E+G   GE  +
Sbjct: 9   LGSSRRRKRG--EMLFRFEAFCQPGYPANFAGAGGFRDNVRTLLGFAHLEAG-VHGET-K 68

Query: 66  CWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVG 106
           CWSF+L++ R PP  V LFV+EE V +     RQC  C+++G
Sbjct: 69  CWSFQLELHRHPPTVVRLFVVEEEVAAS--PHRQCHLCRHIG 104

[Close]
BLAST of MELO3C020043 vs. TrEMBL
Match: A0A0A0KPP3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G291670 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.1e-55
Identity = 106/115 (92.17%), Postives = 110/115 (95.65%), Query Frame = 1 

Query: 1   MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGE 60
           MTTDVIGKKRRRGGGGGERVF FKSFGENGHPAELVGRFRENVEALLGFGKWESGECS E
Sbjct: 1   MTTDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSCE 60

Query: 61  GFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVGKVSKANIMNL 116
           GFRCWSFRLQVQRQPP HVVLFVLEEAVE+ TVA+RQCKQCQYVGK+SKANIM +
Sbjct: 61  GFRCWSFRLQVQRQPPFHVVLFVLEEAVETVTVAARQCKQCQYVGKISKANIMKI 115

[Close]
BLAST of MELO3C020043 vs. TrEMBL
Match: M5Y027_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022178mg PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.3e-21
Identity = 60/102 (58.82%), Postives = 70/102 (68.63%), Query Frame = 1 

Query: 8   KKRRRGGGGGERVFGFKSFGENGHPAELVGR-FRENVEALLGFGKWESGEC---SGEGFR 67
           KKR+RG    ERVF FKSFGENG+P   VG  FRENV+ALL +G  E G     S  G +
Sbjct: 11  KKRKRG----ERVFRFKSFGENGYPVGFVGSSFRENVKALLEYGHVEGGSLCSTSSTGMK 70

Query: 68  CWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVG 106
           CWSF+LQV R  P HVVLFV+EE +E+    +R CKQCQYVG
Sbjct: 71  CWSFQLQVHRHAPAHVVLFVVEEPIEAS--LNRHCKQCQYVG 106

[Close]
BLAST of MELO3C020043 vs. TrEMBL
Match: A0A059D5G3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02649 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 8.8e-21
Identity = 55/98 (56.12%), Postives = 68/98 (69.39%), Query Frame = 1 

Query: 8   KKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGFRCWSF 67
           KKR+RG    ERVF FK+FGENG+P E  G F ENV+ALL  G+ ES  C   G  CWSF
Sbjct: 10  KKRKRG----ERVFSFKTFGENGYPIEFDGSFLENVKALLELGQPESSSCI--GVPCWSF 69

Query: 68  RLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVG 106
            L++ RQPP+HV+L+V+EE +E+    SR CK C YVG
Sbjct: 70  ELEINRQPPLHVLLYVIEEPIEAS--LSRHCKHCLYVG 99

[Close]
BLAST of MELO3C020043 vs. TrEMBL
Match: A0A061GCH5_THECC (RING/FYVE/PHD zinc finger superfamily protein OS=Theobroma cacao GN=TCM_016252 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 7.5e-20
Identity = 55/98 (56.12%), Postives = 67/98 (68.37%), Query Frame = 1 

Query: 8   KKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGFRCWSF 67
           +KRRRGG   ERVF F+SFGENG P E  G FR+NV ALL +G  ES  C+  G   WSF
Sbjct: 13  RKRRRGG---ERVFKFRSFGENGCPVEFDGSFRDNVNALLEYGHLESNLCN--GMLSWSF 72

Query: 68  RLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVG 106
           +L+V R PP+H +LFV+EE +E+    S  CK CQYVG
Sbjct: 73  QLEVHRHPPLHTLLFVVEEPIEAS--ISLYCKHCQYVG 103

[Close]
BLAST of MELO3C020043 vs. TrEMBL
Match: W9RIN0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004031 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 7.5e-20
Identity = 54/98 (55.10%), Postives = 69/98 (70.41%), Query Frame = 1 

Query: 8   KKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGFRCWSF 67
           KKR+RG    ERVF FKSFGE G+P E +G FR+NV+ALL FG  ES  C       WSF
Sbjct: 10  KKRKRG----ERVFRFKSFGEKGYPVEFLGPFRKNVKALLEFGHLESDLC--PRMPSWSF 69

Query: 68  RLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVG 106
           +L+V R PPVHV+LF++EE+++     +R CKQCQ+VG
Sbjct: 70  QLEVHRHPPVHVLLFIIEESID--ISVNRHCKQCQFVG 99

[Close]
BLAST of MELO3C020043 vs. TAIR10
Match: AT5G22260.1 (AT5G22260.1 RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 84.0 bits (206), Expect = 6.9e-17
Identity = 49/102 (48.04%), Postives = 65/102 (63.73%), Query Frame = 1 

Query: 6   IGKKRRRGGGGGERVFGFKSFGENGHPAELVG-RFRENVEALLGFGKWESGECSGEGFRC 65
           I KKR+RG     RVF  K+FGE+GHPAE+    FR+N+  LL FG +ES    G     
Sbjct: 13  IPKKRKRGES---RVFRLKTFGESGHPAEMNELSFRDNLAKLLEFGHFESSGLMGS---- 72

Query: 66  WSFRLQVQRQP-PVHVVLFVLEEAVESCTVASRQCKQCQYVG 106
           WSF+L++QR P P++V+LFV+EE +E+    + +C  CQYVG
Sbjct: 73  WSFQLEIQRNPNPLYVLLFVVEEPIEAS--LNLRCNHCQYVG 105

[Close]
BLAST of MELO3C020043 vs. NCBI nr
Match: gi|700195682|gb|KGN50859.1| (hypothetical protein Csa_5G291670 [Cucumis sativus])

HSP 1 Score: 223.8 bits (569), Expect = 1.6e-55
Identity = 106/115 (92.17%), Postives = 110/115 (95.65%), Query Frame = 1 

Query: 1   MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGE 60
           MTTDVIGKKRRRGGGGGERVF FKSFGENGHPAELVGRFRENVEALLGFGKWESGECS E
Sbjct: 1   MTTDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSCE 60

Query: 61  GFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVGKVSKANIMNL 116
           GFRCWSFRLQVQRQPP HVVLFVLEEAVE+ TVA+RQCKQCQYVGK+SKANIM +
Sbjct: 61  GFRCWSFRLQVQRQPPFHVVLFVLEEAVETVTVAARQCKQCQYVGKISKANIMKI 115

[Close]
BLAST of MELO3C020043 vs. NCBI nr
Match: gi|659114276|ref|XP_008456986.1| (PREDICTED: PHD finger protein MALE STERILITY 1 [Cucumis melo])

HSP 1 Score: 223.8 bits (569), Expect = 1.6e-55
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

Query: 1   MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGE 60
           MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGE
Sbjct: 1   MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGE 60

Query: 61  GFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVG 106
           GFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVG
Sbjct: 61  GFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVG 105

[Close]
BLAST of MELO3C020043 vs. NCBI nr
Match: gi|449445324|ref|XP_004140423.1| (PREDICTED: PHD finger protein MALE STERILITY 1 [Cucumis sativus])

HSP 1 Score: 209.1 bits (531), Expect = 4.0e-51
Identity = 99/105 (94.29%), Postives = 101/105 (96.19%), Query Frame = 1 

Query: 1   MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGE 60
           MTTDVIGKKRRRGGGGGERVF FKSFGENGHPAELVGRFRENVEALLGFGKWESGECS E
Sbjct: 2   MTTDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSCE 61

Query: 61  GFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVG 106
           GFRCWSFRLQVQRQPP HVVLFVLEEAVE+ TVA+RQCKQCQYVG
Sbjct: 62  GFRCWSFRLQVQRQPPFHVVLFVLEEAVETVTVAARQCKQCQYVG 106

[Close]
BLAST of MELO3C020043 vs. NCBI nr
Match: gi|645228358|ref|XP_008220957.1| (PREDICTED: PHD finger protein MALE STERILITY 1 [Prunus mume])

HSP 1 Score: 111.3 bits (277), Expect = 1.1e-21
Identity = 61/102 (59.80%), Postives = 71/102 (69.61%), Query Frame = 1 

Query: 8   KKRRRGGGGGERVFGFKSFGENGHPAELVGR-FRENVEALLGFGKWESGEC---SGEGFR 67
           KKR+RG    ERVF FKSFGENG+P  LVG  FRENV+ALL +G  E G     S  G +
Sbjct: 11  KKRKRG----ERVFRFKSFGENGYPVGLVGSSFRENVKALLEYGHVEGGSLCSTSSTGMK 70

Query: 68  CWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVG 106
           CWSF+LQV R  P HVVLFV+EE +E+    +R CKQCQYVG
Sbjct: 71  CWSFQLQVHRHAPAHVVLFVVEEPIEAS--LNRHCKQCQYVG 106

[Close]
BLAST of MELO3C020043 vs. NCBI nr
Match: gi|596291446|ref|XP_007226344.1| (hypothetical protein PRUPE_ppa022178mg [Prunus persica])

HSP 1 Score: 109.8 bits (273), Expect = 3.3e-21
Identity = 60/102 (58.82%), Postives = 70/102 (68.63%), Query Frame = 1 

Query: 8   KKRRRGGGGGERVFGFKSFGENGHPAELVGR-FRENVEALLGFGKWESGEC---SGEGFR 67
           KKR+RG    ERVF FKSFGENG+P   VG  FRENV+ALL +G  E G     S  G +
Sbjct: 11  KKRKRG----ERVFRFKSFGENGYPVGFVGSSFRENVKALLEYGHVEGGSLCSTSSTGMK 70

Query: 68  CWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVG 106
           CWSF+LQV R  P HVVLFV+EE +E+    +R CKQCQYVG
Sbjct: 71  CWSFQLQVHRHAPAHVVLFVVEEPIEAS--LNRHCKQCQYVG 106

The following BLAST results are available for this feature:
BLAST of MELO3C020043 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MS1_ARATH1.2e-1548.04PHD finger protein MALE STERILITY 1 OS=Arabidopsis thaliana GN=MS1 PE=1 SV=1[more]
PTC1_ORYSJ4.4e-1344.12PHD finger protein PERSISTENT TAPETAL CELL 1 OS=Oryza sativa subsp. japonica GN=... [more]
BLAST of MELO3C020043 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPP3_CUCSA1.1e-5592.17Uncharacterized protein OS=Cucumis sativus GN=Csa_5G291670 PE=4 SV=1[more]
M5Y027_PRUPE2.3e-2158.82Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022178mg PE=4 SV=1[more]
A0A059D5G3_EUCGR8.8e-2156.12Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02649 PE=4 SV=1[more]
A0A061GCH5_THECC7.5e-2056.12RING/FYVE/PHD zinc finger superfamily protein OS=Theobroma cacao GN=TCM_016252 P... [more]
W9RIN0_9ROSA7.5e-2055.10Uncharacterized protein OS=Morus notabilis GN=L484_004031 PE=4 SV=1[more]
BLAST of MELO3C020043 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G22260.16.9e-1748.04 RING/FYVE/PHD zinc finger superfamily protein[more]
BLAST of MELO3C020043 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195682|gb|KGN50859.1|1.6e-5592.17hypothetical protein Csa_5G291670 [Cucumis sativus][more]
gi|659114276|ref|XP_008456986.1|1.6e-55100.00PREDICTED: PHD finger protein MALE STERILITY 1 [Cucumis melo][more]
gi|449445324|ref|XP_004140423.1|4.0e-5194.29PREDICTED: PHD finger protein MALE STERILITY 1 [Cucumis sativus][more]
gi|645228358|ref|XP_008220957.1|1.1e-2159.80PREDICTED: PHD finger protein MALE STERILITY 1 [Prunus mume][more]
gi|596291446|ref|XP_007226344.1|3.3e-2158.82hypothetical protein PRUPE_ppa022178mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048856 anatomical structure development
biological_process GO:0007275 multicellular organism development
biological_process GO:0022414 reproductive process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020043T1MELO3C020043T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR15856PHD FINGER PROTEIN 20-RELATEDcoord: 1..105
score: 7.2
NoneNo IPR availablePANTHERPTHR15856:SF15MBD-R2, ISOFORM Bcoord: 1..105
score: 7.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C020043Csa5G291670Cucumber (Chinese Long) v2cumeB373
MELO3C020043Cla016893Watermelon (97103) v1mewmB079
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C020043Cucumber (Chinese Long) v3cucmeB373
MELO3C020043Watermelon (97103) v2mewmbB049
MELO3C020043Wax gourdmewgoB087
MELO3C020043Cucumber (Gy14) v1cgymeB606
MELO3C020043Wild cucumber (PI 183967)cpimeB373
MELO3C020043Watermelon (Charleston Gray)mewcgB045
MELO3C020043Cucumber (Gy14) v2cgybmeB313