MELO3C020017 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C020017
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionSNF2 domain protein/helicase domain protein
Locationchr3 : 19230549 .. 19232507 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAGAAGGAAGCAAAAGCAACCTCATTGCTCTGGGGGAATAAGATTTGAAGACCGTGGGGATCCCAAGACACAACTTGATATTAATGGGGTTGCGGAAACTGCTGCGGAAACATCAGACATCAAACTTGACGAGGTTAACGAGCCCATTTTTGTTGAAGTTGATCGAAGTGGATGGTATTCCAATGAGCACTATGATATTTCTGAAGTTTTTCTAGTGGATGTAAGGTTAGAAAACCCTTTTGTCCGTTTTTGCTTGGATAAAAGTATTCGTGAGAACTCGAGATACTCGTTAAGGTTTCGGTTGTGCAATGTAAATGGATCTCTCCTTGATCGTATTAAGTTTGGTCATTGGCCTGTTTTATCTTCAAATGATATATTTTTGGAACTTATTGAGAGAGACATCGAGGAAGATGTGAAAGCTTGCTCGGTGGTGTTATCGGGTAATTTTGATGGACCTGATGAGGCCATTTCTGGACTTGTTCATCTTGCAAATCTGAAGCTTATGACGTTGAGGCCAGTTGATGGTGTTTCTTTTTCCCAAAATACAGGATCTCTGAGGTTGAGGGTGGAAATACTATCGAGTGCTTTTGATGCTTGTGAGTCAATATTTGATAATGGCAGGCAGTTGTGGAAAAAGAGTATGATGAATACCATTGCTTGGTTGCGCCCTGAAGTAGTATTATCTGAGGTCAAGTATGGAGTTGTTAAATCGACTAATATGGACACTCATTTGCATCATGAGCCGGGGGATGACGCGTCCAACTCTAGAAAACATGTAAATTTTGATACTATTAGCTTTTATGACGCCATTAAGCCATCCAAGTGAGTATAGTTAGTGCTCATTTACTCGTGTATTTAGTTTTAATTTACAGAACGTCTTTGTTTTTCTGCCTTTCCCATTTTTTCATTACTAATGATATAAGTTCAATGTAGAGATGAACCCGGGCTTGATGAAGACATTCCCAATTTGCTTCCGAAACTAAGACCTTATCAACGTCGTGCTGCCTACTGGATGGTACAGCGGGAGAAAGGATTTTCCGGAAATTCAGGTTTGGGGGAAAATGTGCAGCTTATATCTCCCTTGTGTATGGCCCTGAAATGTCTTAACACTTGTTTGAGAGTGTTCTACAATCCTTTCAGGTACCACCATCTTTACTTTTGAGTGTGGCTTTGTGGCATGAATAAAGTTGAAAATATGTGTTTGTCGATGTAGGTAGGAAAACCTACTTTTCCTCTTGTATGCTTACTTCTGTTTATCTCCAGTGGAAATCTTACTTTGAATGCAGAGCAAATTTTGCCACATGTTTACGGGGGTATTCTAGCTGGTAATTCCCACTAATGAAAATTCATTACATTTTCCTGAGCTTGGCATTTCATTGATTATGAGCATGACCTCTGATACAATTAGCTATTCTTATGGTCTTTATTTTGTCTGAATGATTCGATTTTTGCAGATGAGATGGGTCTAGGAAAAACTATTGAGCTACTGGCATGCATACTTTCTCATCAGATGTCAGTGTTTGAAGGTGGAAAAGGGTTTGATGTTGAAGTCCGACAGCTTGTTGAAGATCAGAGAACTGAATTTAAAAGATTGAAAAGGGAGCGTGTTGAGTGTCTGTGTGGAGCTGTTAGTGAAAATTACAGATACAAAGGGTTGTGGGTGCAATGTGATATTTGTGATGCATGGCAACATGCTGACTGCGTTGGTTATTCACCTAAAGGAAGAATTGTCAAACCCGTTGACACTGAGGATGGGAACAGTAGAAGGGAAAAGAGAAACAATAAGAATACATTAAATGTAATTGTTAGAGCTGAGGAACATGTCTGTACACCTTGCTTAGAGCTGATGCAGGCTACTGATTCTCCAATGGCTACAGGTGCAACTCTAATTGTCTGTCCTGCTCCCATATTATTCCAGTGGCAAGCTGAGATTTTACGGTATACTCTCATTTGA

mRNA sequence

ATGGGTAGAAGGAAGCAAAAGCAACCTCATTGCTCTGGGGGAATAAGATTTGAAGACCGTGGGGATCCCAAGACACAACTTGATATTAATGGGGTTGCGGAAACTGCTGCGGAAACATCAGACATCAAACTTGACGAGGTTAACGAGCCCATTTTTGTTGAAGTTGATCGAAGTGGATGGTATTCCAATGAGCACTATGATATTTCTGAAGTTTTTCTAGTGGATGTAAGGTTAGAAAACCCTTTTGTCCGTTTTTGCTTGGATAAAAGTATTCGTGAGAACTCGAGATACTCGTTAAGGTTTCGGTTGTGCAATGTAAATGGATCTCTCCTTGATCGTATTAAGTTTGGTCATTGGCCTGTTTTATCTTCAAATGATATATTTTTGGAACTTATTGAGAGAGACATCGAGGAAGATGTGAAAGCTTGCTCGGTGGTGTTATCGGGTAATTTTGATGGACCTGATGAGGCCATTTCTGGACTTGTTCATCTTGCAAATCTGAAGCTTATGACGTTGAGGCCAGTTGATGGTGTTTCTTTTTCCCAAAATACAGGATCTCTGAGGTTGAGGGTGGAAATACTATCGAGTGCTTTTGATGCTTGTGAGTCAATATTTGATAATGGCAGGCAGTTGTGGAAAAAGAGTATGATGAATACCATTGCTTGGTTGCGCCCTGAAGTAGTATTATCTGAGGTCAAGTATGGAGTTGTTAAATCGACTAATATGGACACTCATTTGCATCATGAGCCGGGGGATGACGCGTCCAACTCTAGAAAACATGTAAATTTTGATACTATTAGCTTTTATGACGCCATTAAGCCATCCAAAGATGAACCCGGGCTTGATGAAGACATTCCCAATTTGCTTCCGAAACTAAGACCTTATCAACGTCGTGCTGCCTACTGGATGGTACAGCGGGAGAAAGGATTTTCCGGAAATTCAGGTTTGGGGGAAAATGTGCAGCTTATATCTCCCTTGTGTATGGCCCTGAAATGTCTTAACACTTGTTTGAGAGTGTTCTACAATCCTTTCAGTGGAAATCTTACTTTGAATGCAGAGCAAATTTTGCCACATGTTTACGGGGGTATTCTAGCTGATGAGATGGGTCTAGGAAAAACTATTGAGCTACTGGCATGCATACTTTCTCATCAGATGTCAGTGTTTGAAGGTGGAAAAGGGTTTGATGTTGAAGTCCGACAGCTTGTTGAAGATCAGAGAACTGAATTTAAAAGATTGAAAAGGGAGCGTGTTGAGTGTCTGTGTGGAGCTGTTAGTGAAAATTACAGATACAAAGGGTTGTGGGTGCAATGTGATATTTGTGATGCATGGCAACATGCTGACTGCGTTGGTTATTCACCTAAAGGAAGAATTGTCAAACCCGTTGACACTGAGGATGGGAACAGTAGAAGGGAAAAGAGAAACAATAAGAATACATTAAATGTAATTGTTAGAGCTGAGGAACATGTCTGTACACCTTGCTTAGAGCTGATGCAGGCTACTGATTCTCCAATGGCTACAGGTGCAACTCTAATTGTCTGTCCTGCTCCCATATTATTCCAGTGGCAAGCTGAGATTTTACGGTATACTCTCATTTGA

Coding sequence (CDS)

ATGGGTAGAAGGAAGCAAAAGCAACCTCATTGCTCTGGGGGAATAAGATTTGAAGACCGTGGGGATCCCAAGACACAACTTGATATTAATGGGGTTGCGGAAACTGCTGCGGAAACATCAGACATCAAACTTGACGAGGTTAACGAGCCCATTTTTGTTGAAGTTGATCGAAGTGGATGGTATTCCAATGAGCACTATGATATTTCTGAAGTTTTTCTAGTGGATGTAAGGTTAGAAAACCCTTTTGTCCGTTTTTGCTTGGATAAAAGTATTCGTGAGAACTCGAGATACTCGTTAAGGTTTCGGTTGTGCAATGTAAATGGATCTCTCCTTGATCGTATTAAGTTTGGTCATTGGCCTGTTTTATCTTCAAATGATATATTTTTGGAACTTATTGAGAGAGACATCGAGGAAGATGTGAAAGCTTGCTCGGTGGTGTTATCGGGTAATTTTGATGGACCTGATGAGGCCATTTCTGGACTTGTTCATCTTGCAAATCTGAAGCTTATGACGTTGAGGCCAGTTGATGGTGTTTCTTTTTCCCAAAATACAGGATCTCTGAGGTTGAGGGTGGAAATACTATCGAGTGCTTTTGATGCTTGTGAGTCAATATTTGATAATGGCAGGCAGTTGTGGAAAAAGAGTATGATGAATACCATTGCTTGGTTGCGCCCTGAAGTAGTATTATCTGAGGTCAAGTATGGAGTTGTTAAATCGACTAATATGGACACTCATTTGCATCATGAGCCGGGGGATGACGCGTCCAACTCTAGAAAACATGTAAATTTTGATACTATTAGCTTTTATGACGCCATTAAGCCATCCAAAGATGAACCCGGGCTTGATGAAGACATTCCCAATTTGCTTCCGAAACTAAGACCTTATCAACGTCGTGCTGCCTACTGGATGGTACAGCGGGAGAAAGGATTTTCCGGAAATTCAGGTTTGGGGGAAAATGTGCAGCTTATATCTCCCTTGTGTATGGCCCTGAAATGTCTTAACACTTGTTTGAGAGTGTTCTACAATCCTTTCAGTGGAAATCTTACTTTGAATGCAGAGCAAATTTTGCCACATGTTTACGGGGGTATTCTAGCTGATGAGATGGGTCTAGGAAAAACTATTGAGCTACTGGCATGCATACTTTCTCATCAGATGTCAGTGTTTGAAGGTGGAAAAGGGTTTGATGTTGAAGTCCGACAGCTTGTTGAAGATCAGAGAACTGAATTTAAAAGATTGAAAAGGGAGCGTGTTGAGTGTCTGTGTGGAGCTGTTAGTGAAAATTACAGATACAAAGGGTTGTGGGTGCAATGTGATATTTGTGATGCATGGCAACATGCTGACTGCGTTGGTTATTCACCTAAAGGAAGAATTGTCAAACCCGTTGACACTGAGGATGGGAACAGTAGAAGGGAAAAGAGAAACAATAAGAATACATTAAATGTAATTGTTAGAGCTGAGGAACATGTCTGTACACCTTGCTTAGAGCTGATGCAGGCTACTGATTCTCCAATGGCTACAGGTGCAACTCTAATTGTCTGTCCTGCTCCCATATTATTCCAGTGGCAAGCTGAGATTTTACGGTATACTCTCATTTGA

Protein sequence

MGRRKQKQPHCSGGIRFEDRGDPKTQLDINGVAETAAETSDIKLDEVNEPIFVEVDRSGWYSNEHYDISEVFLVDVRLENPFVRFCLDKSIRENSRYSLRFRLCNVNGSLLDRIKFGHWPVLSSNDIFLELIERDIEEDVKACSVVLSGNFDGPDEAISGLVHLANLKLMTLRPVDGVSFSQNTGSLRLRVEILSSAFDACESIFDNGRQLWKKSMMNTIAWLRPEVVLSEVKYGVVKSTNMDTHLHHEPGDDASNSRKHVNFDTISFYDAIKPSKDEPGLDEDIPNLLPKLRPYQRRAAYWMVQREKGFSGNSGLGENVQLISPLCMALKCLNTCLRVFYNPFSGNLTLNAEQILPHVYGGILADEMGLGKTIELLACILSHQMSVFEGGKGFDVEVRQLVEDQRTEFKRLKRERVECLCGAVSENYRYKGLWVQCDICDAWQHADCVGYSPKGRIVKPVDTEDGNSRREKRNNKNTLNVIVRAEEHVCTPCLELMQATDSPMATGATLIVCPAPILFQWQAEILRYTLI*
Homology
[Close]
BLAST of MELO3C020017 vs. Swiss-Prot
Match: SHPRH_MOUSE (E3 ubiquitin-protein ligase SHPRH OS=Mus musculus GN=Shprh PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.4e-12
Identity = 44/107 (41.12%), Postives = 62/107 (57.94%), Query Frame = 1 

Query: 281 LDEDIPNLLPKLRPYQRRAAYWMVQREKGFSG----NSGLGENVQLISPLCMALKCLNTC 340
           +D   P L+P LRPYQR A  WM+Q+E+  S     NS      ++++P           
Sbjct: 288 VDVQHPALIPVLRPYQREAVNWMLQQEQFRSAPPADNSLHFLWREIVTP---------DG 347

Query: 341 LRVFYNPFSGNLTLNAEQILPHVYGGILADEMGLGKTIELLACILSH 384
           L+++YNP++G +  +     P + GGILADEMGLGKT+E+LA IL+H
Sbjct: 348 LKLYYNPYTGCIIRDFPHAGPQLLGGILADEMGLGKTVEVLALILTH 385

[Close]
BLAST of MELO3C020017 vs. Swiss-Prot
Match: SHPRH_HUMAN (E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens GN=SHPRH PE=1 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 9.8e-12
Identity = 45/137 (32.85%), Postives = 70/137 (51.09%), Query Frame = 1 

Query: 249 EPGDDASNSRKHVNFDTISFYDAIKPSKDEPGLDEDI--PNLLPKLRPYQRRAAYWMVQR 308
           E  DD  +  +  + D +  +      ++   +  D+  P L+P LRPYQR A  WM+Q+
Sbjct: 259 EDEDDPESEPEGQDIDELYHFVKQTHQQETQSIQVDVQHPALIPVLRPYQREAVNWMLQQ 318

Query: 309 EKGFSGNSGLGENVQLISPLCMALKCLNTCLRVFYNPFSGNLTLNAEQILPHVYGGILAD 368
           E  F  +      +  +    +     +  L+++YNP++G +        P + GGILAD
Sbjct: 319 EC-FRSSPATESALHFLWREIVT----SEGLKLYYNPYTGCIIREYPNSGPQLLGGILAD 378

Query: 369 EMGLGKTIELLACILSH 384
           EMGLGKT+E+LA IL+H
Sbjct: 379 EMGLGKTVEVLALILTH 390

[Close]
BLAST of MELO3C020017 vs. Swiss-Prot
Match: SM3L2_ARATH (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.9e-10
Identity = 46/119 (38.66%), Postives = 63/119 (52.94%), Query Frame = 1 

Query: 277 DEPGLDE-DIPN-LLPKLRPYQRRAAYWMVQREKGFSGNSGLGENVQLISPLCMALKCL- 336
           D  GL E + P+ LL +LRPYQ++A +WM Q EKG    +   E   ++ P C    CL 
Sbjct: 331 DSSGLKEMETPHTLLCELRPYQKQALHWMTQLEKG----NCTDEAATMLHP-CWEAYCLA 390

Query: 337 -NTCLRVFYNPFSGNLTLNAEQILPHVYGGILADEMGLGKTIELLACILSHQMSVFEGG 392
               L V+ N F+G+ T++    L    GGILAD MGLGKT+  ++ +L+H       G
Sbjct: 391 DKRELVVYLNSFTGDATIHFPSTLQMARGGILADAMGLGKTVMTISLLLAHSWKAASTG 444


HSP 2 Score: 29.3 bits (64), Expect = 1.6e+02
Identity = 12/24 (50.00%), Postives = 13/24 (54.17%), Query Frame = 1 

Query: 502 SPMATGATLIVCPAPILFQWQAEI 526
           S +  G  LIVCP  +L QW+ EI
Sbjct: 485 SVLQNGGNLIVCPMTLLGQWKTEI 508

[Close]
BLAST of MELO3C020017 vs. Swiss-Prot
Match: RAD5_ASPFU (DNA repair protein rad5 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rad5 PE=3 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 6.0e-09
Identity = 41/111 (36.94%), Postives = 54/111 (48.65%), Query Frame = 1 

Query: 286 PNLLPKLRPYQRRAAYWMVQREKGFSGNSGLGENVQLISPLCMA------------LKCL 345
           P+ +  LR YQR+A +WM+ +EK       L      + PL               L  +
Sbjct: 477 PSFVLNLRKYQRQALHWMLAKEKDKKSGRELS-----MHPLWEEYTWPTKDVDDKDLPAV 536

Query: 346 NTCLRVFYNPFSGNLTLNAEQILPHVYGGILADEMGLGKTIELLACILSHQ 385
                 + NP+SG L+L+      H  GGILADEMGLGKTIE+L+ I SH+
Sbjct: 537 EGQAHFYVNPYSGELSLDFPAQEQHCLGGILADEMGLGKTIEMLSLIHSHR 582

[Close]
BLAST of MELO3C020017 vs. Swiss-Prot
Match: RAD5_NEUCR (DNA repair protein rad5 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mus-41 PE=3 SV=3)

HSP 1 Score: 63.5 bits (153), Expect = 7.8e-09
Identity = 40/108 (37.04%), Postives = 56/108 (51.85%), Query Frame = 1 

Query: 292 LRPYQRRAAYWMVQREKGFSGNSGLGENVQLISPLCMA------------LKCLNTCLRV 351
           LRPYQ+++ YWM+ +EK    N    +    + PL               L  +      
Sbjct: 505 LRPYQKQSLYWMLAKEK----NQRTEDRETSMHPLWEEYVWPTKDHDDKDLPVVPDQPCF 564

Query: 352 FYNPFSGNLTLNAEQILPHVYGGILADEMGLGKTIELLACILSHQMSV 388
           + NP+SG+L+L+  +   H  GGILADEMGLGKTI++L+ I SH+  V
Sbjct: 565 YVNPYSGDLSLDFPKQEQHCLGGILADEMGLGKTIQMLSLIHSHRSEV 608

[Close]
BLAST of MELO3C020017 vs. TrEMBL
Match: A0A0A0K8S1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014630 PE=4 SV=1)

HSP 1 Score: 1017.7 bits (2630), Expect = 5.2e-294
Identity = 495/529 (93.57%), Postives = 508/529 (96.03%), Query Frame = 1 

Query: 1   MGRRKQKQPHCSGGIRFEDRGDPKTQLDINGVAETAAETSDIKLDEVNEPIFVEVDRSGW 60
           MGRRKQKQP+ SGGIRFEDRGD KTQLDIN V ETA E+SDIKLD VNEPIFVEVDRSGW
Sbjct: 101 MGRRKQKQPNRSGGIRFEDRGDHKTQLDINEVVETAVESSDIKLDGVNEPIFVEVDRSGW 160

Query: 61  YSNEHYDISEVFLVDVRLENPFVRFCLDKSIRENSRYSLRFRLCNVNGSLLDRIKFGHWP 120
           YSNEHYDISEVFL DVRLE+PFV FCLDKS+RENSRYSLRFRLCNVNGSLLDRIKFGHWP
Sbjct: 161 YSNEHYDISEVFLADVRLEHPFVGFCLDKSVRENSRYSLRFRLCNVNGSLLDRIKFGHWP 220

Query: 121 VLSSNDIFLELIERDIEEDVKACSVVLSGNFDGPDEAISGLVHLANLKLMTLRPVDGVSF 180
           VLSSND FLE IERD+EEDVKACSVVLSGN DGPDEAISGLVHLANLKLMTLRPVDGV F
Sbjct: 221 VLSSNDTFLEFIERDMEEDVKACSVVLSGNLDGPDEAISGLVHLANLKLMTLRPVDGVPF 280

Query: 181 SQNTGSLRLRVEILSSAFDACESIFDNGRQLWKKSMMNTIAWLRPEVVLSEVKYGVVKST 240
           SQN GSLRLRVEILSSAFDACESIFDNGRQLWKKSMMNTI WLRPEVVLSEVKYGVVKS+
Sbjct: 281 SQNMGSLRLRVEILSSAFDACESIFDNGRQLWKKSMMNTITWLRPEVVLSEVKYGVVKSS 340

Query: 241 NMDTHLHHEPGDDASNSRKHVNFDTISFYDAIKPSKDEPGLDEDIPNLLPKLRPYQRRAA 300
           NMDTHLHHE GDD SNSRKH NFDTI FYDAIKPSKDEP LDEDIPNLLPKLRPYQRRAA
Sbjct: 341 NMDTHLHHEAGDDTSNSRKHANFDTIGFYDAIKPSKDEPMLDEDIPNLLPKLRPYQRRAA 400

Query: 301 YWMVQREKGFSGNSGLGENVQLISPLCMALKCLNTCLRVFYNPFSGNLTLNAEQILPHVY 360
           YWM+QREKGFSGNSGLGENVQLISPLCMALKCL+TCLRVFYNPFSGNLTLNAEQ+LPHVY
Sbjct: 401 YWMIQREKGFSGNSGLGENVQLISPLCMALKCLDTCLRVFYNPFSGNLTLNAEQVLPHVY 460

Query: 361 GGILADEMGLGKTIELLACILSHQMSVFEGGKGFDVEVRQLVEDQRTEFKRLKRERVECL 420
           GGILADEMGLGKTIELLACILSHQMSVFEG KGFDVEV+QLVEDQRTEFKRLKRER+ECL
Sbjct: 461 GGILADEMGLGKTIELLACILSHQMSVFEGRKGFDVEVQQLVEDQRTEFKRLKRERIECL 520

Query: 421 CGAVSENYRYKGLWVQCDICDAWQHADCVGYSPKGRIVKPVDTEDGNSRREKRNNKNTLN 480
           CGAVSENYRYKGLWVQCDICDAWQHADCVGYSPKGRIVK VDTEDGNSRREKRNN+NTLN
Sbjct: 521 CGAVSENYRYKGLWVQCDICDAWQHADCVGYSPKGRIVKSVDTEDGNSRREKRNNRNTLN 580

Query: 481 VIVRAEEHVCTPCLELMQATDSPMATGATLIVCPAPILFQWQAEILRYT 530
           VIVRAEEHVCTPCLELMQATDSPMATGATLIVCPAPILFQWQAEILR+T
Sbjct: 581 VIVRAEEHVCTPCLELMQATDSPMATGATLIVCPAPILFQWQAEILRHT 629

[Close]
BLAST of MELO3C020017 vs. TrEMBL
Match: A0A0D2RQK1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G206500 PE=4 SV=1)

HSP 1 Score: 580.5 bits (1495), Expect = 2.1e-162
Identity = 285/531 (53.67%), Postives = 372/531 (70.06%), Query Frame = 1 

Query: 1   MGRRKQKQPHCSGGIRFEDRG--DPKTQLDINGVAETAAETSDIKLDEVNEPIFVEVDRS 60
           MGR+KQ  P  SG +  +  G  +PK    + G           +L ++++P FVEVDR 
Sbjct: 93  MGRKKQANPRRSGALIIDSTGNVEPKQDAKLKG-----------ELVDIDKPFFVEVDRG 152

Query: 61  GWYSNEHYDISEVFLVDVRLENPFVRFCLDKSIRENSRYSLRFRLCNVNGSLLDRIKFGH 120
            W S+EH D+SEV L+D+ L   +  + + +    +S+YSLRFR+CNV+   + RIK GH
Sbjct: 153 SWLSDEHLDLSEVVLIDLNLREGYAGYRISEEFYGDSKYSLRFRVCNVS-EFISRIKLGH 212

Query: 121 WPVLSSNDIFLELIERDIEEDVKACSVVLSGNFDGPDEAISGLVHLANLKLMTLRPVDGV 180
           WPVLSS+D+ LE IE+ + + V+  S++LSG+FDGPDE +S LVHLA+LK +TLRPV  V
Sbjct: 213 WPVLSSSDVSLEFIEKSMSDGVETESLMLSGSFDGPDEGVSALVHLASLKFLTLRPVLEV 272

Query: 181 SFSQNTGSLRLRVEILSSAFDACESIFDNGRQLWKKSMMNTIAWLRPEVVLSEVKYGVVK 240
           + S++  S R+RVEIL S FD CES+    RQLWKKSM+N +AWLRPEV+ SE KYGV +
Sbjct: 273 TLSESLSSFRVRVEILKSVFDDCESLLGKTRQLWKKSMVNVMAWLRPEVMTSEAKYGVCE 332

Query: 241 STNMDTHLHHEPGDDASNSRKHVNFDTISFYDAIKPSKDEPGLDEDIPNLLPKLRPYQRR 300
           S NM+  L+    D+ S   K   FD   FY+AIKPSK+   L +DIP+LLP LRPYQRR
Sbjct: 333 SVNMEVDLYPVTEDETSRPGKRARFDVAEFYEAIKPSKENSMLKDDIPDLLPVLRPYQRR 392

Query: 301 AAYWMVQREKGFSGNSGLGENVQLISPLCMALKCLNTCLRVFYNPFSGNLTLNAEQILPH 360
           AAYWM+QREKG S +    E   L SPLC+ +  L+T  ++F+NPF GN++L+ E + P+
Sbjct: 393 AAYWMIQREKGDSRSMEEWERSMLSSPLCIPVHFLDTSSKMFFNPFGGNVSLHLEPMSPY 452

Query: 361 VYGGILADEMGLGKTIELLACILSHQMSVFEGGKGFDVEVRQLVEDQRTEFKRLKRERVE 420
           VYGGILADEMGLGKT+ELLACI +HQ    EG    D  ++ +  D +   KRLKRERVE
Sbjct: 453 VYGGILADEMGLGKTVELLACIFAHQKPDSEGAVFKDTAIK-VTTDGKVSLKRLKRERVE 512

Query: 421 CLCGAVSENYRYKGLWVQCDICDAWQHADCVGYSPKGRIVKPVDTEDGNSRREKRNNKNT 480
           C CGAVSEN +YKGLWVQCD+CDAWQH++CVGYSP+G+  K  +  D    ++ +  K T
Sbjct: 513 CTCGAVSENRKYKGLWVQCDMCDAWQHSECVGYSPRGKARKVSENADEQGLQKLKRRKET 572

Query: 481 LNVIVRAEEHVCTPCLELMQATDSPMATGATLIVCPAPILFQWQAEILRYT 530
            N++VR  EH+CTPCLEL+QATDSP+ATGATLIVCPAPIL QW  EI+R+T
Sbjct: 573 TNIVVREGEHICTPCLELLQATDSPIATGATLIVCPAPILSQWHTEIIRHT 610

[Close]
BLAST of MELO3C020017 vs. TrEMBL
Match: A0A0D2VPP2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G206500 PE=4 SV=1)

HSP 1 Score: 580.5 bits (1495), Expect = 2.1e-162
Identity = 285/531 (53.67%), Postives = 372/531 (70.06%), Query Frame = 1 

Query: 1   MGRRKQKQPHCSGGIRFEDRG--DPKTQLDINGVAETAAETSDIKLDEVNEPIFVEVDRS 60
           MGR+KQ  P  SG +  +  G  +PK    + G           +L ++++P FVEVDR 
Sbjct: 93  MGRKKQANPRRSGALIIDSTGNVEPKQDAKLKG-----------ELVDIDKPFFVEVDRG 152

Query: 61  GWYSNEHYDISEVFLVDVRLENPFVRFCLDKSIRENSRYSLRFRLCNVNGSLLDRIKFGH 120
            W S+EH D+SEV L+D+ L   +  + + +    +S+YSLRFR+CNV+   + RIK GH
Sbjct: 153 SWLSDEHLDLSEVVLIDLNLREGYAGYRISEEFYGDSKYSLRFRVCNVS-EFISRIKLGH 212

Query: 121 WPVLSSNDIFLELIERDIEEDVKACSVVLSGNFDGPDEAISGLVHLANLKLMTLRPVDGV 180
           WPVLSS+D+ LE IE+ + + V+  S++LSG+FDGPDE +S LVHLA+LK +TLRPV  V
Sbjct: 213 WPVLSSSDVSLEFIEKSMSDGVETESLMLSGSFDGPDEGVSALVHLASLKFLTLRPVLEV 272

Query: 181 SFSQNTGSLRLRVEILSSAFDACESIFDNGRQLWKKSMMNTIAWLRPEVVLSEVKYGVVK 240
           + S++  S R+RVEIL S FD CES+    RQLWKKSM+N +AWLRPEV+ SE KYGV +
Sbjct: 273 TLSESLSSFRVRVEILKSVFDDCESLLGKTRQLWKKSMVNVMAWLRPEVMTSEAKYGVCE 332

Query: 241 STNMDTHLHHEPGDDASNSRKHVNFDTISFYDAIKPSKDEPGLDEDIPNLLPKLRPYQRR 300
           S NM+  L+    D+ S   K   FD   FY+AIKPSK+   L +DIP+LLP LRPYQRR
Sbjct: 333 SVNMEVDLYPVTEDETSRPGKRARFDVAEFYEAIKPSKENSMLKDDIPDLLPVLRPYQRR 392

Query: 301 AAYWMVQREKGFSGNSGLGENVQLISPLCMALKCLNTCLRVFYNPFSGNLTLNAEQILPH 360
           AAYWM+QREKG S +    E   L SPLC+ +  L+T  ++F+NPF GN++L+ E + P+
Sbjct: 393 AAYWMIQREKGDSRSMEEWERSMLSSPLCIPVHFLDTSSKMFFNPFGGNVSLHLEPMSPY 452

Query: 361 VYGGILADEMGLGKTIELLACILSHQMSVFEGGKGFDVEVRQLVEDQRTEFKRLKRERVE 420
           VYGGILADEMGLGKT+ELLACI +HQ    EG    D  ++ +  D +   KRLKRERVE
Sbjct: 453 VYGGILADEMGLGKTVELLACIFAHQKPDSEGAVFKDTAIK-VTTDGKVSLKRLKRERVE 512

Query: 421 CLCGAVSENYRYKGLWVQCDICDAWQHADCVGYSPKGRIVKPVDTEDGNSRREKRNNKNT 480
           C CGAVSEN +YKGLWVQCD+CDAWQH++CVGYSP+G+  K  +  D    ++ +  K T
Sbjct: 513 CTCGAVSENRKYKGLWVQCDMCDAWQHSECVGYSPRGKARKVSENADEQGLQKLKRRKET 572

Query: 481 LNVIVRAEEHVCTPCLELMQATDSPMATGATLIVCPAPILFQWQAEILRYT 530
            N++VR  EH+CTPCLEL+QATDSP+ATGATLIVCPAPIL QW  EI+R+T
Sbjct: 573 TNIVVREGEHICTPCLELLQATDSPIATGATLIVCPAPILSQWHTEIIRHT 610

[Close]
BLAST of MELO3C020017 vs. TrEMBL
Match: A0A0D2TB70_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G206500 PE=4 SV=1)

HSP 1 Score: 580.5 bits (1495), Expect = 2.1e-162
Identity = 285/531 (53.67%), Postives = 372/531 (70.06%), Query Frame = 1 

Query: 1   MGRRKQKQPHCSGGIRFEDRG--DPKTQLDINGVAETAAETSDIKLDEVNEPIFVEVDRS 60
           MGR+KQ  P  SG +  +  G  +PK    + G           +L ++++P FVEVDR 
Sbjct: 93  MGRKKQANPRRSGALIIDSTGNVEPKQDAKLKG-----------ELVDIDKPFFVEVDRG 152

Query: 61  GWYSNEHYDISEVFLVDVRLENPFVRFCLDKSIRENSRYSLRFRLCNVNGSLLDRIKFGH 120
            W S+EH D+SEV L+D+ L   +  + + +    +S+YSLRFR+CNV+   + RIK GH
Sbjct: 153 SWLSDEHLDLSEVVLIDLNLREGYAGYRISEEFYGDSKYSLRFRVCNVS-EFISRIKLGH 212

Query: 121 WPVLSSNDIFLELIERDIEEDVKACSVVLSGNFDGPDEAISGLVHLANLKLMTLRPVDGV 180
           WPVLSS+D+ LE IE+ + + V+  S++LSG+FDGPDE +S LVHLA+LK +TLRPV  V
Sbjct: 213 WPVLSSSDVSLEFIEKSMSDGVETESLMLSGSFDGPDEGVSALVHLASLKFLTLRPVLEV 272

Query: 181 SFSQNTGSLRLRVEILSSAFDACESIFDNGRQLWKKSMMNTIAWLRPEVVLSEVKYGVVK 240
           + S++  S R+RVEIL S FD CES+    RQLWKKSM+N +AWLRPEV+ SE KYGV +
Sbjct: 273 TLSESLSSFRVRVEILKSVFDDCESLLGKTRQLWKKSMVNVMAWLRPEVMTSEAKYGVCE 332

Query: 241 STNMDTHLHHEPGDDASNSRKHVNFDTISFYDAIKPSKDEPGLDEDIPNLLPKLRPYQRR 300
           S NM+  L+    D+ S   K   FD   FY+AIKPSK+   L +DIP+LLP LRPYQRR
Sbjct: 333 SVNMEVDLYPVTEDETSRPGKRARFDVAEFYEAIKPSKENSMLKDDIPDLLPVLRPYQRR 392

Query: 301 AAYWMVQREKGFSGNSGLGENVQLISPLCMALKCLNTCLRVFYNPFSGNLTLNAEQILPH 360
           AAYWM+QREKG S +    E   L SPLC+ +  L+T  ++F+NPF GN++L+ E + P+
Sbjct: 393 AAYWMIQREKGDSRSMEEWERSMLSSPLCIPVHFLDTSSKMFFNPFGGNVSLHLEPMSPY 452

Query: 361 VYGGILADEMGLGKTIELLACILSHQMSVFEGGKGFDVEVRQLVEDQRTEFKRLKRERVE 420
           VYGGILADEMGLGKT+ELLACI +HQ    EG    D  ++ +  D +   KRLKRERVE
Sbjct: 453 VYGGILADEMGLGKTVELLACIFAHQKPDSEGAVFKDTAIK-VTTDGKVSLKRLKRERVE 512

Query: 421 CLCGAVSENYRYKGLWVQCDICDAWQHADCVGYSPKGRIVKPVDTEDGNSRREKRNNKNT 480
           C CGAVSEN +YKGLWVQCD+CDAWQH++CVGYSP+G+  K  +  D    ++ +  K T
Sbjct: 513 CTCGAVSENRKYKGLWVQCDMCDAWQHSECVGYSPRGKARKVSENADEQGLQKLKRRKET 572

Query: 481 LNVIVRAEEHVCTPCLELMQATDSPMATGATLIVCPAPILFQWQAEILRYT 530
            N++VR  EH+CTPCLEL+QATDSP+ATGATLIVCPAPIL QW  EI+R+T
Sbjct: 573 TNIVVREGEHICTPCLELLQATDSPIATGATLIVCPAPILSQWHTEIIRHT 610

[Close]
BLAST of MELO3C020017 vs. TrEMBL
Match: A0A0D2UWA1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G206500 PE=4 SV=1)

HSP 1 Score: 580.5 bits (1495), Expect = 2.1e-162
Identity = 285/531 (53.67%), Postives = 372/531 (70.06%), Query Frame = 1 

Query: 1   MGRRKQKQPHCSGGIRFEDRG--DPKTQLDINGVAETAAETSDIKLDEVNEPIFVEVDRS 60
           MGR+KQ  P  SG +  +  G  +PK    + G           +L ++++P FVEVDR 
Sbjct: 93  MGRKKQANPRRSGALIIDSTGNVEPKQDAKLKG-----------ELVDIDKPFFVEVDRG 152

Query: 61  GWYSNEHYDISEVFLVDVRLENPFVRFCLDKSIRENSRYSLRFRLCNVNGSLLDRIKFGH 120
            W S+EH D+SEV L+D+ L   +  + + +    +S+YSLRFR+CNV+   + RIK GH
Sbjct: 153 SWLSDEHLDLSEVVLIDLNLREGYAGYRISEEFYGDSKYSLRFRVCNVS-EFISRIKLGH 212

Query: 121 WPVLSSNDIFLELIERDIEEDVKACSVVLSGNFDGPDEAISGLVHLANLKLMTLRPVDGV 180
           WPVLSS+D+ LE IE+ + + V+  S++LSG+FDGPDE +S LVHLA+LK +TLRPV  V
Sbjct: 213 WPVLSSSDVSLEFIEKSMSDGVETESLMLSGSFDGPDEGVSALVHLASLKFLTLRPVLEV 272

Query: 181 SFSQNTGSLRLRVEILSSAFDACESIFDNGRQLWKKSMMNTIAWLRPEVVLSEVKYGVVK 240
           + S++  S R+RVEIL S FD CES+    RQLWKKSM+N +AWLRPEV+ SE KYGV +
Sbjct: 273 TLSESLSSFRVRVEILKSVFDDCESLLGKTRQLWKKSMVNVMAWLRPEVMTSEAKYGVCE 332

Query: 241 STNMDTHLHHEPGDDASNSRKHVNFDTISFYDAIKPSKDEPGLDEDIPNLLPKLRPYQRR 300
           S NM+  L+    D+ S   K   FD   FY+AIKPSK+   L +DIP+LLP LRPYQRR
Sbjct: 333 SVNMEVDLYPVTEDETSRPGKRARFDVAEFYEAIKPSKENSMLKDDIPDLLPVLRPYQRR 392

Query: 301 AAYWMVQREKGFSGNSGLGENVQLISPLCMALKCLNTCLRVFYNPFSGNLTLNAEQILPH 360
           AAYWM+QREKG S +    E   L SPLC+ +  L+T  ++F+NPF GN++L+ E + P+
Sbjct: 393 AAYWMIQREKGDSRSMEEWERSMLSSPLCIPVHFLDTSSKMFFNPFGGNVSLHLEPMSPY 452

Query: 361 VYGGILADEMGLGKTIELLACILSHQMSVFEGGKGFDVEVRQLVEDQRTEFKRLKRERVE 420
           VYGGILADEMGLGKT+ELLACI +HQ    EG    D  ++ +  D +   KRLKRERVE
Sbjct: 453 VYGGILADEMGLGKTVELLACIFAHQKPDSEGAVFKDTAIK-VTTDGKVSLKRLKRERVE 512

Query: 421 CLCGAVSENYRYKGLWVQCDICDAWQHADCVGYSPKGRIVKPVDTEDGNSRREKRNNKNT 480
           C CGAVSEN +YKGLWVQCD+CDAWQH++CVGYSP+G+  K  +  D    ++ +  K T
Sbjct: 513 CTCGAVSENRKYKGLWVQCDMCDAWQHSECVGYSPRGKARKVSENADEQGLQKLKRRKET 572

Query: 481 LNVIVRAEEHVCTPCLELMQATDSPMATGATLIVCPAPILFQWQAEILRYT 530
            N++VR  EH+CTPCLEL+QATDSP+ATGATLIVCPAPIL QW  EI+R+T
Sbjct: 573 TNIVVREGEHICTPCLELLQATDSPIATGATLIVCPAPILSQWHTEIIRHT 610

[Close]
BLAST of MELO3C020017 vs. TAIR10
Match: AT2G40770.1 (AT2G40770.1 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding)

HSP 1 Score: 462.2 bits (1188), Expect = 4.2e-130
Identity = 252/540 (46.67%), Postives = 348/540 (64.44%), Query Frame = 1 

Query: 1   MGRRKQKQPHCSGGIRFEDRGDPKTQLDINGVAETAAETSDIKLDEVNEPIFVEVDRSGW 60
           MGRRKQ +P  + G+     G    +  + G  + A  + D  ++++++P +V +  S  
Sbjct: 1   MGRRKQSKPQRAVGL-ITPTGSESDRNQLPG--DEAEGSGDKNVEDIDKPYYVNICLSSR 60

Query: 61  YSNE--HYDISEVFLVDVRLENPF---VRFCLDKSIRENSRYSLRFRLCNVNGSLLDRIK 120
            S +  ++D++EV L +  +         F     +  +   SLRFRLCNV  + +DRIK
Sbjct: 61  VSEQQQNFDLAEVVLTNFSVRERVGSSSTFTKPIEVDHDLDCSLRFRLCNVT-NFVDRIK 120

Query: 121 FGHWPVLSSNDIFLELIERDIEEDVKACSVVLSGNFDGPDEAISGLVHLANLKLMTLRPV 180
            GHWPVLSS+DI LEL++  + +D +  SV+ S +FDGP E +SGL HLA++K +TLR +
Sbjct: 121 LGHWPVLSSSDITLELVDNKVSDD-EVGSVIWSASFDGPGEGVSGLAHLASIKFLTLRLM 180

Query: 181 DGVSFSQNTGSLRLRVEILSSAFDACESIFDNGRQLWKKSMMNTIAWLRPEVVLSEVKYG 240
            G   ++   S R+RVE+L  AFDAC+S+ +N RQ+WKKSM++ ++WLRPEV+ SE +YG
Sbjct: 181 PG---NEGLLSPRVRVEMLQQAFDACDSLLENTRQIWKKSMIHVMSWLRPEVMTSEARYG 240

Query: 241 VVKSTNMDTHLHHEPGDDASNSRKHVNFDTISFYDAIKPSKDEPGLDEDIPNLLPKLRPY 300
             +    D        D+  +S K  +FD  +FY+AIKPSK +  L +DI +LLP+LRPY
Sbjct: 241 T-RFNVKDIESSVVTEDETLDSSKQSSFDAAAFYEAIKPSKTDAMLGDDIADLLPELRPY 300

Query: 301 QRRAAYWMVQREKGFSGNSGLGENVQLISPLCMALKCLNTCLRVFYNPFSGNLTLNAEQI 360
           QRRAAYWMVQRE+G     G  E+ Q ISPL +++  L++  ++F NPFSGN++L  E  
Sbjct: 301 QRRAAYWMVQRERGDPITLGDKEDNQFISPLSISVGFLDSATKMFLNPFSGNISLTPEYF 360

Query: 361 LPHVYGGILADEMGLGKTIELLACILSH------QMSVFEGGKGFDVEVRQLVEDQRTEF 420
            P + GGILADEMGLGKT+ELLACI SH      ++SV  G    DV             
Sbjct: 361 SPRIQGGILADEMGLGKTVELLACIFSHRKPAEDEISVSNGSSVTDV--------LNAGL 420

Query: 421 KRLKRERVECLCGAVSENYRYKGLWVQCDICDAWQHADCVGYSPKGRIVKPVDTEDGNSR 480
           +RLKRERVEC+CGAVSE+++YKG+WVQCD+CDAWQHADCVGYSPKG+  K     D    
Sbjct: 421 RRLKRERVECICGAVSESHKYKGVWVQCDLCDAWQHADCVGYSPKGKGKKDSQHID-EKA 480

Query: 481 REKRNNKNTLNVIVRAEEHVCTPCLELMQATDSPMATGATLIVCPAPILFQWQAEILRYT 530
            +K++ K+   +IVR  E++C  C EL+Q T SP++TGATLIVCPAPIL QW +EI R+T
Sbjct: 481 SQKKSKKDATEIIVREGEYICQMCSELLQVTASPISTGATLIVCPAPILPQWHSEITRHT 522

[Close]
BLAST of MELO3C020017 vs. TAIR10
Match: AT5G22750.1 (AT5G22750.1 DNA/RNA helicase protein)

HSP 1 Score: 68.9 bits (167), Expect = 1.0e-11
Identity = 46/119 (38.66%), Postives = 63/119 (52.94%), Query Frame = 1 

Query: 277 DEPGLDE-DIPN-LLPKLRPYQRRAAYWMVQREKGFSGNSGLGENVQLISPLCMALKCL- 336
           D  GL E + P+ LL +LRPYQ++A +WM Q EKG    +   E   ++ P C    CL 
Sbjct: 331 DSSGLKEMETPHTLLCELRPYQKQALHWMTQLEKG----NCTDEAATMLHP-CWEAYCLA 390

Query: 337 -NTCLRVFYNPFSGNLTLNAEQILPHVYGGILADEMGLGKTIELLACILSHQMSVFEGG 392
               L V+ N F+G+ T++    L    GGILAD MGLGKT+  ++ +L+H       G
Sbjct: 391 DKRELVVYLNSFTGDATIHFPSTLQMARGGILADAMGLGKTVMTISLLLAHSWKAASTG 444


HSP 2 Score: 29.3 bits (64), Expect = 9.2e+00
Identity = 12/24 (50.00%), Postives = 13/24 (54.17%), Query Frame = 1 

Query: 502 SPMATGATLIVCPAPILFQWQAEI 526
           S +  G  LIVCP  +L QW+ EI
Sbjct: 485 SVLQNGGNLIVCPMTLLGQWKTEI 508

[Close]
BLAST of MELO3C020017 vs. TAIR10
Match: AT5G43530.1 (AT5G43530.1 Helicase protein with RING/U-box domain)

HSP 1 Score: 63.2 bits (152), Expect = 5.7e-10
Identity = 49/152 (32.24%), Postives = 72/152 (47.37%), Query Frame = 1 

Query: 267 SFYDAIKPSKDEPGLDE-DIPNLLP-KLRPYQRRAAYWMVQREKGFSGNSGLGENVQLIS 326
           S+ + +  + D   L+E + P+ L   LRPYQ++A YWM + EKG      + +  + + 
Sbjct: 589 SYMNRVVGAADSYNLEEMEAPSTLTCNLRPYQKQALYWMSESEKGID----VEKAAETLH 648

Query: 327 PLCMALK-CLNTCLRVFYNPFSGNLTLNAEQILPHVYGGILADEMGLGKTIELLACILSH 386
           P   A + C      ++ N FSG  T+          GGILAD MGLGKT+  +A IL+ 
Sbjct: 649 PCWEAYRICDERAPSIYLNIFSGEATIQFPTATQMARGGILADAMGLGKTVMTIALILAR 708

Query: 387 QMSVFEGGKGFDVEVRQLVEDQRTEFKRLKRE 416
                  G+G       LV D   + KR ++E
Sbjct: 709 P------GRGNPENEDVLVADVNAD-KRNRKE 729

[Close]
BLAST of MELO3C020017 vs. NCBI nr
Match: gi|659113864|ref|XP_008456790.1| (PREDICTED: E3 ubiquitin-protein ligase SHPRH isoform X3 [Cucumis melo])

HSP 1 Score: 1084.3 bits (2803), Expect = 0.0e+00
Identity = 529/531 (99.62%), Postives = 530/531 (99.81%), Query Frame = 1 

Query: 1   MGRRKQKQPHCSGGIRFEDRGDPKTQLDINGVAETAAETSDIKLDEVNEPIFVEVDRSGW 60
           MGRRKQKQPHCSGGIRFEDRGDPKTQLDINGVAETAAETSDIKLDEVNEPIFVEVDRSGW
Sbjct: 1   MGRRKQKQPHCSGGIRFEDRGDPKTQLDINGVAETAAETSDIKLDEVNEPIFVEVDRSGW 60

Query: 61  YSNEHYDISEVFLVDVRLENPFVRFCLDKSIRENSRYSLRFRLCNVNGSLLDRIKFGHWP 120
           YSNEHYDISEVFLVDVRLENPFVRFCLDKSIRENSRYSLRFRLCNVNGSLLDRIKFGHWP
Sbjct: 61  YSNEHYDISEVFLVDVRLENPFVRFCLDKSIRENSRYSLRFRLCNVNGSLLDRIKFGHWP 120

Query: 121 VLSSNDIFLELIERDIEEDVKACSVVLSGNFDGPDEAISGLVHLANLKLMTLRPVDGVSF 180
           VLSSNDIFLELIERDIEEDVKACSVVLSGNFDGPDEAISGLVHLANLKLMTLRPVDGVSF
Sbjct: 121 VLSSNDIFLELIERDIEEDVKACSVVLSGNFDGPDEAISGLVHLANLKLMTLRPVDGVSF 180

Query: 181 SQNTGSLRLRVEILSSAFDACESIFDNGRQLWKKSMMNTIAWLRPEVVLSEVKYGVVKST 240
           SQNTGSLRLRVEILSSAFDACESIFDNGRQLWKKSMMNTIAWLRPEVVLSEVKYGVVKST
Sbjct: 181 SQNTGSLRLRVEILSSAFDACESIFDNGRQLWKKSMMNTIAWLRPEVVLSEVKYGVVKST 240

Query: 241 NMDTHLHHEPGDDASNSRKHVNFDTISFYDAIKPSKDEPGLDEDIPNLLPKLRPYQRRAA 300
           NMDTHLHHEPGDDASNSRKHVNFDTISFYDAIKPSKDEPGLDEDIPNLLPKLRPYQRRAA
Sbjct: 241 NMDTHLHHEPGDDASNSRKHVNFDTISFYDAIKPSKDEPGLDEDIPNLLPKLRPYQRRAA 300

Query: 301 YWMVQREKGFSGNSGLGENVQLISPLCMALKCLNTCLRVFYNPFSGNLTLNAEQILPHVY 360
           YWMVQREKGFSGNSGLGENVQLISPLCMALKCLNTCLRVFYNPFSGNLTLNAEQILPHVY
Sbjct: 301 YWMVQREKGFSGNSGLGENVQLISPLCMALKCLNTCLRVFYNPFSGNLTLNAEQILPHVY 360

Query: 361 GGILADEMGLGKTIELLACILSHQMSVFEGGKGFDVEVRQLVEDQRTEFKRLKRERVECL 420
           GGILADEMGLGKTIELLACILSHQMSVFEGGKGFDVEVRQLVEDQRTEFKRLKRERVECL
Sbjct: 361 GGILADEMGLGKTIELLACILSHQMSVFEGGKGFDVEVRQLVEDQRTEFKRLKRERVECL 420

Query: 421 CGAVSENYRYKGLWVQCDICDAWQHADCVGYSPKGRIVKPVDTEDGNSRREKRNNKNTLN 480
           CGAVSENYRYKGLWVQCDICDAWQHADCVGYSPKGRIVKPVDTEDGNSRREKRNNKNTLN
Sbjct: 421 CGAVSENYRYKGLWVQCDICDAWQHADCVGYSPKGRIVKPVDTEDGNSRREKRNNKNTLN 480

Query: 481 VIVRAEEHVCTPCLELMQATDSPMATGATLIVCPAPILFQWQAEILRYTLI 532
           VIVRAEEHVCTPCLELMQATDSPMATGATLIVCPAPILFQWQAEILRY +I
Sbjct: 481 VIVRAEEHVCTPCLELMQATDSPMATGATLIVCPAPILFQWQAEILRYPVI 531

[Close]
BLAST of MELO3C020017 vs. NCBI nr
Match: gi|659113862|ref|XP_008456789.1| (PREDICTED: E3 ubiquitin-protein ligase SHPRH isoform X2 [Cucumis melo])

HSP 1 Score: 1082.8 bits (2799), Expect = 0.0e+00
Identity = 528/529 (99.81%), Postives = 529/529 (100.00%), Query Frame = 1 

Query: 1   MGRRKQKQPHCSGGIRFEDRGDPKTQLDINGVAETAAETSDIKLDEVNEPIFVEVDRSGW 60
           MGRRKQKQPHCSGGIRFEDRGDPKTQLDINGVAETAAETSDIKLDEVNEPIFVEVDRSGW
Sbjct: 1   MGRRKQKQPHCSGGIRFEDRGDPKTQLDINGVAETAAETSDIKLDEVNEPIFVEVDRSGW 60

Query: 61  YSNEHYDISEVFLVDVRLENPFVRFCLDKSIRENSRYSLRFRLCNVNGSLLDRIKFGHWP 120
           YSNEHYDISEVFLVDVRLENPFVRFCLDKSIRENSRYSLRFRLCNVNGSLLDRIKFGHWP
Sbjct: 61  YSNEHYDISEVFLVDVRLENPFVRFCLDKSIRENSRYSLRFRLCNVNGSLLDRIKFGHWP 120

Query: 121 VLSSNDIFLELIERDIEEDVKACSVVLSGNFDGPDEAISGLVHLANLKLMTLRPVDGVSF 180
           VLSSNDIFLELIERDIEEDVKACSVVLSGNFDGPDEAISGLVHLANLKLMTLRPVDGVSF
Sbjct: 121 VLSSNDIFLELIERDIEEDVKACSVVLSGNFDGPDEAISGLVHLANLKLMTLRPVDGVSF 180

Query: 181 SQNTGSLRLRVEILSSAFDACESIFDNGRQLWKKSMMNTIAWLRPEVVLSEVKYGVVKST 240
           SQNTGSLRLRVEILSSAFDACESIFDNGRQLWKKSMMNTIAWLRPEVVLSEVKYGVVKST
Sbjct: 181 SQNTGSLRLRVEILSSAFDACESIFDNGRQLWKKSMMNTIAWLRPEVVLSEVKYGVVKST 240

Query: 241 NMDTHLHHEPGDDASNSRKHVNFDTISFYDAIKPSKDEPGLDEDIPNLLPKLRPYQRRAA 300
           NMDTHLHHEPGDDASNSRKHVNFDTISFYDAIKPSKDEPGLDEDIPNLLPKLRPYQRRAA
Sbjct: 241 NMDTHLHHEPGDDASNSRKHVNFDTISFYDAIKPSKDEPGLDEDIPNLLPKLRPYQRRAA 300

Query: 301 YWMVQREKGFSGNSGLGENVQLISPLCMALKCLNTCLRVFYNPFSGNLTLNAEQILPHVY 360
           YWMVQREKGFSGNSGLGENVQLISPLCMALKCLNTCLRVFYNPFSGNLTLNAEQILPHVY
Sbjct: 301 YWMVQREKGFSGNSGLGENVQLISPLCMALKCLNTCLRVFYNPFSGNLTLNAEQILPHVY 360

Query: 361 GGILADEMGLGKTIELLACILSHQMSVFEGGKGFDVEVRQLVEDQRTEFKRLKRERVECL 420
           GGILADEMGLGKTIELLACILSHQMSVFEGGKGFDVEVRQLVEDQRTEFKRLKRERVECL
Sbjct: 361 GGILADEMGLGKTIELLACILSHQMSVFEGGKGFDVEVRQLVEDQRTEFKRLKRERVECL 420

Query: 421 CGAVSENYRYKGLWVQCDICDAWQHADCVGYSPKGRIVKPVDTEDGNSRREKRNNKNTLN 480
           CGAVSENYRYKGLWVQCDICDAWQHADCVGYSPKGRIVKPVDTEDGNSRREKRNNKNTLN
Sbjct: 421 CGAVSENYRYKGLWVQCDICDAWQHADCVGYSPKGRIVKPVDTEDGNSRREKRNNKNTLN 480

Query: 481 VIVRAEEHVCTPCLELMQATDSPMATGATLIVCPAPILFQWQAEILRYT 530
           VIVRAEEHVCTPCLELMQATDSPMATGATLIVCPAPILFQWQAEILR+T
Sbjct: 481 VIVRAEEHVCTPCLELMQATDSPMATGATLIVCPAPILFQWQAEILRHT 529

[Close]
BLAST of MELO3C020017 vs. NCBI nr
Match: gi|659113854|ref|XP_008456785.1| (PREDICTED: E3 ubiquitin-protein ligase SHPRH isoform X1 [Cucumis melo])

HSP 1 Score: 1082.8 bits (2799), Expect = 0.0e+00
Identity = 528/529 (99.81%), Postives = 529/529 (100.00%), Query Frame = 1 

Query: 1   MGRRKQKQPHCSGGIRFEDRGDPKTQLDINGVAETAAETSDIKLDEVNEPIFVEVDRSGW 60
           MGRRKQKQPHCSGGIRFEDRGDPKTQLDINGVAETAAETSDIKLDEVNEPIFVEVDRSGW
Sbjct: 1   MGRRKQKQPHCSGGIRFEDRGDPKTQLDINGVAETAAETSDIKLDEVNEPIFVEVDRSGW 60

Query: 61  YSNEHYDISEVFLVDVRLENPFVRFCLDKSIRENSRYSLRFRLCNVNGSLLDRIKFGHWP 120
           YSNEHYDISEVFLVDVRLENPFVRFCLDKSIRENSRYSLRFRLCNVNGSLLDRIKFGHWP
Sbjct: 61  YSNEHYDISEVFLVDVRLENPFVRFCLDKSIRENSRYSLRFRLCNVNGSLLDRIKFGHWP 120

Query: 121 VLSSNDIFLELIERDIEEDVKACSVVLSGNFDGPDEAISGLVHLANLKLMTLRPVDGVSF 180
           VLSSNDIFLELIERDIEEDVKACSVVLSGNFDGPDEAISGLVHLANLKLMTLRPVDGVSF
Sbjct: 121 VLSSNDIFLELIERDIEEDVKACSVVLSGNFDGPDEAISGLVHLANLKLMTLRPVDGVSF 180

Query: 181 SQNTGSLRLRVEILSSAFDACESIFDNGRQLWKKSMMNTIAWLRPEVVLSEVKYGVVKST 240
           SQNTGSLRLRVEILSSAFDACESIFDNGRQLWKKSMMNTIAWLRPEVVLSEVKYGVVKST
Sbjct: 181 SQNTGSLRLRVEILSSAFDACESIFDNGRQLWKKSMMNTIAWLRPEVVLSEVKYGVVKST 240

Query: 241 NMDTHLHHEPGDDASNSRKHVNFDTISFYDAIKPSKDEPGLDEDIPNLLPKLRPYQRRAA 300
           NMDTHLHHEPGDDASNSRKHVNFDTISFYDAIKPSKDEPGLDEDIPNLLPKLRPYQRRAA
Sbjct: 241 NMDTHLHHEPGDDASNSRKHVNFDTISFYDAIKPSKDEPGLDEDIPNLLPKLRPYQRRAA 300

Query: 301 YWMVQREKGFSGNSGLGENVQLISPLCMALKCLNTCLRVFYNPFSGNLTLNAEQILPHVY 360
           YWMVQREKGFSGNSGLGENVQLISPLCMALKCLNTCLRVFYNPFSGNLTLNAEQILPHVY
Sbjct: 301 YWMVQREKGFSGNSGLGENVQLISPLCMALKCLNTCLRVFYNPFSGNLTLNAEQILPHVY 360

Query: 361 GGILADEMGLGKTIELLACILSHQMSVFEGGKGFDVEVRQLVEDQRTEFKRLKRERVECL 420
           GGILADEMGLGKTIELLACILSHQMSVFEGGKGFDVEVRQLVEDQRTEFKRLKRERVECL
Sbjct: 361 GGILADEMGLGKTIELLACILSHQMSVFEGGKGFDVEVRQLVEDQRTEFKRLKRERVECL 420

Query: 421 CGAVSENYRYKGLWVQCDICDAWQHADCVGYSPKGRIVKPVDTEDGNSRREKRNNKNTLN 480
           CGAVSENYRYKGLWVQCDICDAWQHADCVGYSPKGRIVKPVDTEDGNSRREKRNNKNTLN
Sbjct: 421 CGAVSENYRYKGLWVQCDICDAWQHADCVGYSPKGRIVKPVDTEDGNSRREKRNNKNTLN 480

Query: 481 VIVRAEEHVCTPCLELMQATDSPMATGATLIVCPAPILFQWQAEILRYT 530
           VIVRAEEHVCTPCLELMQATDSPMATGATLIVCPAPILFQWQAEILR+T
Sbjct: 481 VIVRAEEHVCTPCLELMQATDSPMATGATLIVCPAPILFQWQAEILRHT 529

[Close]
BLAST of MELO3C020017 vs. NCBI nr
Match: gi|778709713|ref|XP_011656442.1| (PREDICTED: E3 ubiquitin-protein ligase SHPRH isoform X2 [Cucumis sativus])

HSP 1 Score: 1019.2 bits (2634), Expect = 2.6e-294
Identity = 496/531 (93.41%), Postives = 509/531 (95.86%), Query Frame = 1 

Query: 1   MGRRKQKQPHCSGGIRFEDRGDPKTQLDINGVAETAAETSDIKLDEVNEPIFVEVDRSGW 60
           MGRRKQKQP+ SGGIRFEDRGD KTQLDIN V ETA E+SDIKLD VNEPIFVEVDRSGW
Sbjct: 1   MGRRKQKQPNRSGGIRFEDRGDHKTQLDINEVVETAVESSDIKLDGVNEPIFVEVDRSGW 60

Query: 61  YSNEHYDISEVFLVDVRLENPFVRFCLDKSIRENSRYSLRFRLCNVNGSLLDRIKFGHWP 120
           YSNEHYDISEVFL DVRLE+PFV FCLDKS+RENSRYSLRFRLCNVNGSLLDRIKFGHWP
Sbjct: 61  YSNEHYDISEVFLADVRLEHPFVGFCLDKSVRENSRYSLRFRLCNVNGSLLDRIKFGHWP 120

Query: 121 VLSSNDIFLELIERDIEEDVKACSVVLSGNFDGPDEAISGLVHLANLKLMTLRPVDGVSF 180
           VLSSND FLE IERD+EEDVKACSVVLSGN DGPDEAISGLVHLANLKLMTLRPVDGV F
Sbjct: 121 VLSSNDTFLEFIERDMEEDVKACSVVLSGNLDGPDEAISGLVHLANLKLMTLRPVDGVPF 180

Query: 181 SQNTGSLRLRVEILSSAFDACESIFDNGRQLWKKSMMNTIAWLRPEVVLSEVKYGVVKST 240
           SQN GSLRLRVEILSSAFDACESIFDNGRQLWKKSMMNTI WLRPEVVLSEVKYGVVKS+
Sbjct: 181 SQNMGSLRLRVEILSSAFDACESIFDNGRQLWKKSMMNTITWLRPEVVLSEVKYGVVKSS 240

Query: 241 NMDTHLHHEPGDDASNSRKHVNFDTISFYDAIKPSKDEPGLDEDIPNLLPKLRPYQRRAA 300
           NMDTHLHHE GDD SNSRKH NFDTI FYDAIKPSKDEP LDEDIPNLLPKLRPYQRRAA
Sbjct: 241 NMDTHLHHEAGDDTSNSRKHANFDTIGFYDAIKPSKDEPMLDEDIPNLLPKLRPYQRRAA 300

Query: 301 YWMVQREKGFSGNSGLGENVQLISPLCMALKCLNTCLRVFYNPFSGNLTLNAEQILPHVY 360
           YWM+QREKGFSGNSGLGENVQLISPLCMALKCL+TCLRVFYNPFSGNLTLNAEQ+LPHVY
Sbjct: 301 YWMIQREKGFSGNSGLGENVQLISPLCMALKCLDTCLRVFYNPFSGNLTLNAEQVLPHVY 360

Query: 361 GGILADEMGLGKTIELLACILSHQMSVFEGGKGFDVEVRQLVEDQRTEFKRLKRERVECL 420
           GGILADEMGLGKTIELLACILSHQMSVFEG KGFDVEV+QLVEDQRTEFKRLKRER+ECL
Sbjct: 361 GGILADEMGLGKTIELLACILSHQMSVFEGRKGFDVEVQQLVEDQRTEFKRLKRERIECL 420

Query: 421 CGAVSENYRYKGLWVQCDICDAWQHADCVGYSPKGRIVKPVDTEDGNSRREKRNNKNTLN 480
           CGAVSENYRYKGLWVQCDICDAWQHADCVGYSPKGRIVK VDTEDGNSRREKRNN+NTLN
Sbjct: 421 CGAVSENYRYKGLWVQCDICDAWQHADCVGYSPKGRIVKSVDTEDGNSRREKRNNRNTLN 480

Query: 481 VIVRAEEHVCTPCLELMQATDSPMATGATLIVCPAPILFQWQAEILRYTLI 532
           VIVRAEEHVCTPCLELMQATDSPMATGATLIVCPAPILFQWQAEILRY +I
Sbjct: 481 VIVRAEEHVCTPCLELMQATDSPMATGATLIVCPAPILFQWQAEILRYPVI 531

[Close]
BLAST of MELO3C020017 vs. NCBI nr
Match: gi|700190639|gb|KGN45843.1| (hypothetical protein Csa_6G014630 [Cucumis sativus])

HSP 1 Score: 1017.7 bits (2630), Expect = 7.4e-294
Identity = 495/529 (93.57%), Postives = 508/529 (96.03%), Query Frame = 1 

Query: 1   MGRRKQKQPHCSGGIRFEDRGDPKTQLDINGVAETAAETSDIKLDEVNEPIFVEVDRSGW 60
           MGRRKQKQP+ SGGIRFEDRGD KTQLDIN V ETA E+SDIKLD VNEPIFVEVDRSGW
Sbjct: 101 MGRRKQKQPNRSGGIRFEDRGDHKTQLDINEVVETAVESSDIKLDGVNEPIFVEVDRSGW 160

Query: 61  YSNEHYDISEVFLVDVRLENPFVRFCLDKSIRENSRYSLRFRLCNVNGSLLDRIKFGHWP 120
           YSNEHYDISEVFL DVRLE+PFV FCLDKS+RENSRYSLRFRLCNVNGSLLDRIKFGHWP
Sbjct: 161 YSNEHYDISEVFLADVRLEHPFVGFCLDKSVRENSRYSLRFRLCNVNGSLLDRIKFGHWP 220

Query: 121 VLSSNDIFLELIERDIEEDVKACSVVLSGNFDGPDEAISGLVHLANLKLMTLRPVDGVSF 180
           VLSSND FLE IERD+EEDVKACSVVLSGN DGPDEAISGLVHLANLKLMTLRPVDGV F
Sbjct: 221 VLSSNDTFLEFIERDMEEDVKACSVVLSGNLDGPDEAISGLVHLANLKLMTLRPVDGVPF 280

Query: 181 SQNTGSLRLRVEILSSAFDACESIFDNGRQLWKKSMMNTIAWLRPEVVLSEVKYGVVKST 240
           SQN GSLRLRVEILSSAFDACESIFDNGRQLWKKSMMNTI WLRPEVVLSEVKYGVVKS+
Sbjct: 281 SQNMGSLRLRVEILSSAFDACESIFDNGRQLWKKSMMNTITWLRPEVVLSEVKYGVVKSS 340

Query: 241 NMDTHLHHEPGDDASNSRKHVNFDTISFYDAIKPSKDEPGLDEDIPNLLPKLRPYQRRAA 300
           NMDTHLHHE GDD SNSRKH NFDTI FYDAIKPSKDEP LDEDIPNLLPKLRPYQRRAA
Sbjct: 341 NMDTHLHHEAGDDTSNSRKHANFDTIGFYDAIKPSKDEPMLDEDIPNLLPKLRPYQRRAA 400

Query: 301 YWMVQREKGFSGNSGLGENVQLISPLCMALKCLNTCLRVFYNPFSGNLTLNAEQILPHVY 360
           YWM+QREKGFSGNSGLGENVQLISPLCMALKCL+TCLRVFYNPFSGNLTLNAEQ+LPHVY
Sbjct: 401 YWMIQREKGFSGNSGLGENVQLISPLCMALKCLDTCLRVFYNPFSGNLTLNAEQVLPHVY 460

Query: 361 GGILADEMGLGKTIELLACILSHQMSVFEGGKGFDVEVRQLVEDQRTEFKRLKRERVECL 420
           GGILADEMGLGKTIELLACILSHQMSVFEG KGFDVEV+QLVEDQRTEFKRLKRER+ECL
Sbjct: 461 GGILADEMGLGKTIELLACILSHQMSVFEGRKGFDVEVQQLVEDQRTEFKRLKRERIECL 520

Query: 421 CGAVSENYRYKGLWVQCDICDAWQHADCVGYSPKGRIVKPVDTEDGNSRREKRNNKNTLN 480
           CGAVSENYRYKGLWVQCDICDAWQHADCVGYSPKGRIVK VDTEDGNSRREKRNN+NTLN
Sbjct: 521 CGAVSENYRYKGLWVQCDICDAWQHADCVGYSPKGRIVKSVDTEDGNSRREKRNNRNTLN 580

Query: 481 VIVRAEEHVCTPCLELMQATDSPMATGATLIVCPAPILFQWQAEILRYT 530
           VIVRAEEHVCTPCLELMQATDSPMATGATLIVCPAPILFQWQAEILR+T
Sbjct: 581 VIVRAEEHVCTPCLELMQATDSPMATGATLIVCPAPILFQWQAEILRHT 629

The following BLAST results are available for this feature:
BLAST of MELO3C020017 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SHPRH_MOUSE4.4e-1241.12E3 ubiquitin-protein ligase SHPRH OS=Mus musculus GN=Shprh PE=1 SV=1[more]
SHPRH_HUMAN9.8e-1232.85E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens GN=SHPRH PE=1 SV=2[more]
SM3L2_ARATH1.9e-1038.66Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromati... [more]
RAD5_ASPFU6.0e-0936.94DNA repair protein rad5 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / ... [more]
RAD5_NEUCR7.8e-0937.04DNA repair protein rad5 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / C... [more]
BLAST of MELO3C020017 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8S1_CUCSA5.2e-29493.57Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014630 PE=4 SV=1[more]
A0A0D2RQK1_GOSRA2.1e-16253.67Uncharacterized protein OS=Gossypium raimondii GN=B456_011G206500 PE=4 SV=1[more]
A0A0D2VPP2_GOSRA2.1e-16253.67Uncharacterized protein OS=Gossypium raimondii GN=B456_011G206500 PE=4 SV=1[more]
A0A0D2TB70_GOSRA2.1e-16253.67Uncharacterized protein OS=Gossypium raimondii GN=B456_011G206500 PE=4 SV=1[more]
A0A0D2UWA1_GOSRA2.1e-16253.67Uncharacterized protein OS=Gossypium raimondii GN=B456_011G206500 PE=4 SV=1[more]
BLAST of MELO3C020017 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G40770.14.2e-13046.67 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid bind... [more]
AT5G22750.11.0e-1138.66 DNA/RNA helicase protein[more]
AT5G43530.15.7e-1032.24 Helicase protein with RING/U-box domain[more]
BLAST of MELO3C020017 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659113864|ref|XP_008456790.1|0.0e+0099.62PREDICTED: E3 ubiquitin-protein ligase SHPRH isoform X3 [Cucumis melo][more]
gi|659113862|ref|XP_008456789.1|0.0e+0099.81PREDICTED: E3 ubiquitin-protein ligase SHPRH isoform X2 [Cucumis melo][more]
gi|659113854|ref|XP_008456785.1|0.0e+0099.81PREDICTED: E3 ubiquitin-protein ligase SHPRH isoform X1 [Cucumis melo][more]
gi|778709713|ref|XP_011656442.1|2.6e-29493.41PREDICTED: E3 ubiquitin-protein ligase SHPRH isoform X2 [Cucumis sativus][more]
gi|700190639|gb|KGN45843.1|7.4e-29493.57hypothetical protein Csa_6G014630 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000330SNF2_N
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0016874 ligase activity
molecular_function GO:0046872 metal ion binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU63026melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020017T1MELO3C020017T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU63026MU63026transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000330SNF2-related, N-terminal domainPFAMPF00176SNF2_Ncoord: 295..529
score: 2.2
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 418..494
score: 3.
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 414..494
score: 2.
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 504..527
score: 2.7E-6coord: 357..384
score: 2.7E-6coord: 289..309
score: 2.
IPR027417P-loop containing nucleoside triphosphate hydrolaseunknownSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 272..309
score: 7.43E-11coord: 358..433
score: 7.43
NoneNo IPR availablePANTHERPTHR10799SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATEDcoord: 506..529
score: 1.9E-71coord: 281..307
score: 1.9E-71coord: 415..475
score: 1.9E-71coord: 323..385
score: 1.9
NoneNo IPR availablePANTHERPTHR10799:SF695RING-FINGER, DEAD-LIKE HELICASE, PHD AND SNF2 DOMAIN-CONTAINING PROTEINcoord: 415..475
score: 1.9E-71coord: 323..385
score: 1.9E-71coord: 506..529
score: 1.9E-71coord: 281..307
score: 1.9