MELO3C020011 (gene) Melon (DHL92) v3.5.1

NameMELO3C020011
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPHD finger protein ALFIN-LIKE 5
Locationchr3 : 19378253 .. 19378951 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCAACACAGAGAAAGCAACGGTCGCGAGTGCTTCAATGAGGGAGGAGTTATCGAGCATTTTCTTCGAGATACATTATGAGACTTTGGTATGTATCTTCTTGTTGTTGGTTTTTGTTTCTTTGCTTGATGGGATTGTACATTTAGGTTTATCTTAACTTAAGCACCTTAGATTTGATTTTTGTTTCTTTACTTGGTGACATTACAAGTAGTTGAGATTCCTATTTGGTTGCTGGATTTTTTTTTTTTTCCTTATTTCTTTCTAGTTTTGGTTCATTATACTAGTGCAGAAGTGGTGGCATTTCCCTACTTGGTTTCTTTTCTTGTTTGGAATGAGTATGTTCAATTATTTCGATTATATGATTTATACTTTGGTATGTAAGGTATAATTTCTTCTTCCTTTAGCTCCATTGATTTAAGTTCCTTATGAAGTTGAGATAGTGATATTAGTTATGATAATGTTTGTTGCTCTACTAATGTTATGATAATGTTTTCAGAGGGAAGTTGAAATGCAAGGAATGTACGCATGGCAGTCACAGGCAAGGGAAGAGGTAGAGACGTTGTGTGAAGAAGATGAAGACGAGCATGGTGACACCTTATGTGGGGCATGCGGTAAGAAGTATGCTTCAGATGAATTTTGGATTTGCTGTAATATTTGTTGTATGAAGAAATGCTTCAGTTTATCAGTTTCCTTGTGA

mRNA sequence

ATGCCCAACACAGAGAAAGCAACGGTCGCGAGTGCTTCAATGAGGGAGGAGTTATCGAGCATTTTCTTCGAGATACATTATGAGACTTTGAGGGAAGTTGAAATGCAAGGAATGTACGCATGGCAGTCACAGGCAAGGGAAGAGGTAGAGACGTTGTGTGAAGAAGATGAAGACGAGCATGGTGACACCTTATGTGGGGCATGCGGTAAGAAGTATGCTTCAGATGAATTTTGGATTTGCTGTAATATTTGTTGTATGAAGAAATGCTTCAGTTTATCAGTTTCCTTGTGA

Coding sequence (CDS)

ATGCCCAACACAGAGAAAGCAACGGTCGCGAGTGCTTCAATGAGGGAGGAGTTATCGAGCATTTTCTTCGAGATACATTATGAGACTTTGAGGGAAGTTGAAATGCAAGGAATGTACGCATGGCAGTCACAGGCAAGGGAAGAGGTAGAGACGTTGTGTGAAGAAGATGAAGACGAGCATGGTGACACCTTATGTGGGGCATGCGGTAAGAAGTATGCTTCAGATGAATTTTGGATTTGCTGTAATATTTGTTGTATGAAGAAATGCTTCAGTTTATCAGTTTCCTTGTGA

Protein sequence

MPNTEKATVASASMREELSSIFFEIHYETLREVEMQGMYAWQSQAREEVETLCEEDEDEHGDTLCGACGKKYASDEFWICCNICCMKKCFSLSVSL*
BLAST of MELO3C020011 vs. Swiss-Prot
Match: ALFL5_ARATH (PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana GN=AL5 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.4e-11
Identity = 28/38 (73.68%), Postives = 30/38 (78.95%), Query Frame = 1

Query: 47  EEVETLCEEDEDEHGDTLCGACGKKYASDEFWICCNIC 85
           EE E   +EDEDEHG+TLCGACG  YASDEFWICC++C
Sbjct: 189 EEGEEEEDEDEDEHGETLCGACGDNYASDEFWICCDMC 226

BLAST of MELO3C020011 vs. Swiss-Prot
Match: ALFL3_ARATH (PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana GN=AL3 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-10
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 1

Query: 36  QGMYAWQSQAREEVETLCEEDEDEHGDTLCGACGKKYASDEFWICCNIC 85
           +G  +   Q +EE E + E+DED+HG+TLCGACG    +DEFWICC++C
Sbjct: 168 EGKSSKTKQPKEEDEEIDEDDEDDHGETLCGACGDSDGADEFWICCDLC 216

BLAST of MELO3C020011 vs. Swiss-Prot
Match: ALFL4_ARATH (PHD finger protein ALFIN-LIKE 4 OS=Arabidopsis thaliana GN=AL4 PE=1 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-10
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 1

Query: 47  EEVETLCEEDEDEHGDTLCGACGKKYASDEFWICCNICCM 87
           EE E + EEDEDE G+T CGACG+ YA+DEFWICC++C M
Sbjct: 184 EEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEM 223

BLAST of MELO3C020011 vs. Swiss-Prot
Match: ALFL1_ARATH (PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana GN=AL1 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-09
Identity = 22/36 (61.11%), Postives = 28/36 (77.78%), Query Frame = 1

Query: 49  VETLCEEDEDEHGDTLCGACGKKYASDEFWICCNIC 85
           +E   E+++DEHGDTLCG+CG  Y +DEFWICC++C
Sbjct: 172 MEESYEDEDDEHGDTLCGSCGGNYTNDEFWICCDVC 207

BLAST of MELO3C020011 vs. Swiss-Prot
Match: ALFL2_ARATH (PHD finger protein ALFIN-LIKE 2 OS=Arabidopsis thaliana GN=AL2 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-09
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 1

Query: 54  EEDEDEHGDTLCGACGKKYASDEFWICCNIC 85
           EE+EDEHGDTLCG+CG  Y ++EFWICC++C
Sbjct: 182 EEEEDEHGDTLCGSCGGHYTNEEFWICCDVC 212

BLAST of MELO3C020011 vs. TrEMBL
Match: A0A0A0K9L1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G450620 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 7.3e-21
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 1

Query: 31  REVEMQGMYAWQSQAREEVETLCEEDEDEHGDTLCGACGKKYASDEFWICCNIC 85
           RE EMQGMYA QSQAREEVETL EEDEDEHGDTLCGACG+ YASDEFWICC+IC
Sbjct: 164 REAEMQGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDIC 217

BLAST of MELO3C020011 vs. TrEMBL
Match: A0A067KX82_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24721 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.3e-13
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 1

Query: 31  REVEMQGMYAWQSQAREEVETLCEEDEDEHGDTLCGACGKKYASDEFWICCNIC 85
           ++ E QG Y+  SQ ++E E L EEDEDEHGDTLCGACG  Y +DEFWICC+ C
Sbjct: 170 QQQESQGKYSKLSQPKDEDEHLVEEDEDEHGDTLCGACGDNYGADEFWICCDAC 223

BLAST of MELO3C020011 vs. TrEMBL
Match: V4SRT9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026319mg PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-12
Identity = 39/80 (48.75%), Postives = 51/80 (63.75%), Query Frame = 1

Query: 5   EKATVASASMREELSSIFFEIHYETLREVEMQGMYAWQSQAREEVETLCEEDEDEHGDTL 64
           EK++V++ S  +  S      H +  R  E    Y+   Q  +E E + EE+EDEHGDTL
Sbjct: 148 EKSSVSNHSSNKSKS------HSKVQRGSESHTKYSKPMQPNDEDEGMDEEEEDEHGDTL 207

Query: 65  CGACGKKYASDEFWICCNIC 85
           CGACG+ YASDEFWICC+IC
Sbjct: 208 CGACGENYASDEFWICCDIC 221

BLAST of MELO3C020011 vs. TrEMBL
Match: A0A059CNH6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00844 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.6e-12
Identity = 37/80 (46.25%), Postives = 57/80 (71.25%), Query Frame = 1

Query: 5   EKATVASASMREELSSIFFEIHYETLREVEMQGMYAWQSQAREEVETLCEEDEDEHGDTL 64
           EK++V+++S + + SS   +   E+++       Y+   QA++E E + EEDE+EHGDTL
Sbjct: 308 EKSSVSNSSNKSKSSSKGGQRASESVK-------YSKPVQAKDEEEVVDEEDEEEHGDTL 367

Query: 65  CGACGKKYASDEFWICCNIC 85
           CGACG+ YA+DEFWICC++C
Sbjct: 368 CGACGENYAADEFWICCDMC 380

BLAST of MELO3C020011 vs. TrEMBL
Match: A0A059CLY7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00844 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.6e-12
Identity = 37/80 (46.25%), Postives = 57/80 (71.25%), Query Frame = 1

Query: 5   EKATVASASMREELSSIFFEIHYETLREVEMQGMYAWQSQAREEVETLCEEDEDEHGDTL 64
           EK++V+++S + + SS   +   E+++       Y+   QA++E E + EEDE+EHGDTL
Sbjct: 319 EKSSVSNSSNKSKSSSKGGQRASESVK-------YSKPVQAKDEEEVVDEEDEEEHGDTL 378

Query: 65  CGACGKKYASDEFWICCNIC 85
           CGACG+ YA+DEFWICC++C
Sbjct: 379 CGACGENYAADEFWICCDMC 391

BLAST of MELO3C020011 vs. TAIR10
Match: AT5G20510.1 (AT5G20510.1 alfin-like 5)

HSP 1 Score: 68.9 bits (167), Expect = 1.9e-12
Identity = 28/38 (73.68%), Postives = 30/38 (78.95%), Query Frame = 1

Query: 47  EEVETLCEEDEDEHGDTLCGACGKKYASDEFWICCNIC 85
           EE E   +EDEDEHG+TLCGACG  YASDEFWICC++C
Sbjct: 189 EEGEEEEDEDEDEHGETLCGACGDNYASDEFWICCDMC 226

BLAST of MELO3C020011 vs. TAIR10
Match: AT3G42790.1 (AT3G42790.1 alfin-like 3)

HSP 1 Score: 67.0 bits (162), Expect = 7.2e-12
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 1

Query: 36  QGMYAWQSQAREEVETLCEEDEDEHGDTLCGACGKKYASDEFWICCNIC 85
           +G  +   Q +EE E + E+DED+HG+TLCGACG    +DEFWICC++C
Sbjct: 168 EGKSSKTKQPKEEDEEIDEDDEDDHGETLCGACGDSDGADEFWICCDLC 216

BLAST of MELO3C020011 vs. TAIR10
Match: AT5G26210.1 (AT5G26210.1 alfin-like 4)

HSP 1 Score: 66.6 bits (161), Expect = 9.5e-12
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 1

Query: 47  EEVETLCEEDEDEHGDTLCGACGKKYASDEFWICCNICCM 87
           EE E + EEDEDE G+T CGACG+ YA+DEFWICC++C M
Sbjct: 184 EEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEM 223

BLAST of MELO3C020011 vs. TAIR10
Match: AT3G11200.1 (AT3G11200.1 alfin-like 2)

HSP 1 Score: 63.2 bits (152), Expect = 1.0e-10
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 1

Query: 54  EEDEDEHGDTLCGACGKKYASDEFWICCNIC 85
           EE+EDEHGDTLCG+CG  Y ++EFWICC++C
Sbjct: 182 EEEEDEHGDTLCGSCGGHYTNEEFWICCDVC 212

BLAST of MELO3C020011 vs. TAIR10
Match: AT5G05610.1 (AT5G05610.1 alfin-like 1)

HSP 1 Score: 63.2 bits (152), Expect = 1.0e-10
Identity = 22/36 (61.11%), Postives = 28/36 (77.78%), Query Frame = 1

Query: 49  VETLCEEDEDEHGDTLCGACGKKYASDEFWICCNIC 85
           +E   E+++DEHGDTLCG+CG  Y +DEFWICC++C
Sbjct: 172 MEESYEDEDDEHGDTLCGSCGGNYTNDEFWICCDVC 207

BLAST of MELO3C020011 vs. NCBI nr
Match: gi|449447876|ref|XP_004141692.1| (PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-20
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 1

Query: 31  REVEMQGMYAWQSQAREEVETLCEEDEDEHGDTLCGACGKKYASDEFWICCNIC 85
           RE EMQGMYA QSQAREEVETL EEDEDEHGDTLCGACG+ YASDEFWICC+IC
Sbjct: 164 REAEMQGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDIC 217

BLAST of MELO3C020011 vs. NCBI nr
Match: gi|659124754|ref|XP_008462330.1| (PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis melo])

HSP 1 Score: 105.1 bits (261), Expect = 6.8e-20
Identity = 50/74 (67.57%), Postives = 58/74 (78.38%), Query Frame = 1

Query: 11  SASMREELSSIFFEIHYETLREVEMQGMYAWQSQAREEVETLCEEDEDEHGDTLCGACGK 70
           S+S     S   F+ +++  RE + QGMYA QSQAREEVETL EEDEDEHGDTLCGACG+
Sbjct: 149 SSSANGSKSKSSFKSNFQ--READAQGMYARQSQAREEVETLYEEDEDEHGDTLCGACGE 208

Query: 71  KYASDEFWICCNIC 85
            YASDEFWICC+IC
Sbjct: 209 NYASDEFWICCDIC 220

BLAST of MELO3C020011 vs. NCBI nr
Match: gi|659124756|ref|XP_008462331.1| (PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo])

HSP 1 Score: 104.4 bits (259), Expect = 1.2e-19
Identity = 46/54 (85.19%), Postives = 49/54 (90.74%), Query Frame = 1

Query: 31  REVEMQGMYAWQSQAREEVETLCEEDEDEHGDTLCGACGKKYASDEFWICCNIC 85
           RE + QGMYA QSQAREEVETL EEDEDEHGDTLCGACG+ YASDEFWICC+IC
Sbjct: 164 READAQGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDIC 217

BLAST of MELO3C020011 vs. NCBI nr
Match: gi|802577284|ref|XP_012068916.1| (PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X2 [Jatropha curcas])

HSP 1 Score: 82.4 bits (202), Expect = 4.7e-13
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = 1

Query: 5   EKATVASASMREELSSIFFEIHYETLREVEMQGMYAWQSQAREEVETLCEEDEDEHGDTL 64
           EK+ V++ S  +  S+         +++ E QG Y+  SQ ++E E L EEDEDEHGDTL
Sbjct: 150 EKSFVSNHSSNKSKSN-------SKMQQQESQGKYSKLSQPKDEDEHLVEEDEDEHGDTL 209

Query: 65  CGACGKKYASDEFWICCNIC 85
           CGACG  Y +DEFWICC+ C
Sbjct: 210 CGACGDNYGADEFWICCDAC 222

BLAST of MELO3C020011 vs. NCBI nr
Match: gi|802577282|ref|XP_012068915.1| (PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Jatropha curcas])

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 1

Query: 31  REVEMQGMYAWQSQAREEVETLCEEDEDEHGDTLCGACGKKYASDEFWICCNIC 85
           ++ E QG Y+  SQ ++E E L EEDEDEHGDTLCGACG  Y +DEFWICC+ C
Sbjct: 170 QQQESQGKYSKLSQPKDEDEHLVEEDEDEHGDTLCGACGDNYGADEFWICCDAC 223

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ALFL5_ARATH3.4e-1173.68PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana GN=AL5 PE=2 SV=1[more]
ALFL3_ARATH1.3e-1053.06PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana GN=AL3 PE=1 SV=1[more]
ALFL4_ARATH1.7e-1067.50PHD finger protein ALFIN-LIKE 4 OS=Arabidopsis thaliana GN=AL4 PE=1 SV=2[more]
ALFL1_ARATH1.9e-0961.11PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana GN=AL1 PE=1 SV=1[more]
ALFL2_ARATH1.9e-0970.97PHD finger protein ALFIN-LIKE 2 OS=Arabidopsis thaliana GN=AL2 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0K9L1_CUCSA7.3e-2188.89Uncharacterized protein OS=Cucumis sativus GN=Csa_7G450620 PE=4 SV=1[more]
A0A067KX82_JATCU7.3e-1362.96Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24721 PE=4 SV=1[more]
V4SRT9_9ROSI1.6e-1248.75Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026319mg PE=4 SV=1[more]
A0A059CNH6_EUCGR3.6e-1246.25Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00844 PE=4 SV=1[more]
A0A059CLY7_EUCGR3.6e-1246.25Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00844 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G20510.11.9e-1273.68 alfin-like 5[more]
AT3G42790.17.2e-1253.06 alfin-like 3[more]
AT5G26210.19.5e-1267.50 alfin-like 4[more]
AT3G11200.11.0e-1070.97 alfin-like 2[more]
AT5G05610.11.0e-1061.11 alfin-like 1[more]
Match NameE-valueIdentityDescription
gi|449447876|ref|XP_004141692.1|1.1e-2088.89PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis sativus][more]
gi|659124754|ref|XP_008462330.1|6.8e-2067.57PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis melo][more]
gi|659124756|ref|XP_008462331.1|1.2e-1985.19PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo][more]
gi|802577284|ref|XP_012068916.1|4.7e-1348.75PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X2 [Jatropha curcas][more]
gi|802577282|ref|XP_012068915.1|1.1e-1262.96PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Jatropha curcas][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
molecular_function GO:0042393 histone binding
molecular_function GO:0008270 zinc ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020011T1MELO3C020011T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12321CPG BINDING PROTEINcoord: 21..84
score: 1.1
NoneNo IPR availablePANTHERPTHR12321:SF43PHD FINGER PROTEIN ALFIN-LIKE 3coord: 21..84
score: 1.1

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None