MELO3C019935 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C019935
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionHCP-like superfamily protein with MYND-type zinc finger
Locationchr3 : 20709728 .. 20709904 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAGGGCACCCATGACCGCTTCCGGAGCATTGACCTCCTCCTCCCCTTCACTCACCACCACCACCGTCATCTTACCCAACGGTTCTTCTTCCTCTCAACACCCCCGAAACCCTAGTGCTCCGTCTCAATCGGAAGAAGAAGAAGGTCTCCTGGAAGGAAGGCACCGTCGATAA

mRNA sequence

ATGGCCAGGGCACCCATGACCGCTTCCGGAGCATTGACCTCCTCCTCCCCTTCACTCACCACCACCACCGTCATCTTACCCAACGGTTCTTCTTCCTCTCAACACCCCCGAAACCCTAGTGCTCCGTCTCAATCGGAAGAAGAAGAAGGTCTCCTGGAAGGAAGGCACCGTCGATAA

Coding sequence (CDS)

ATGGCCAGGGCACCCATGACCGCTTCCGGAGCATTGACCTCCTCCTCCCCTTCACTCACCACCACCACCGTCATCTTACCCAACGGTTCTTCTTCCTCTCAACACCCCCGAAACCCTAGTGCTCCGTCTCAATCGGAAGAAGAAGAAGGTCTCCTGGAAGGAAGGCACCGTCGATAA

Protein sequence

MARAPMTASGALTSSSPSLTTTTVILPNGSSSSQHPRNPSAPSQSEEEEGLLEGRHRR*
Homology
[Close]
BLAST of MELO3C019935 vs. NCBI nr
Match: gi|778710584|ref|XP_004140998.2| (PREDICTED: type 1 phosphatases regulator ypi1 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-08
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1 

Query: 1  MARAPMTASGALTSSSPSLTTTTVILPNGSSSSQHP 37
          MARAPMTASGA TSSSPSLTTTTVILPNGSSSSQ P
Sbjct: 31 MARAPMTASGAFTSSSPSLTTTTVILPNGSSSSQPP 66

[Close]
BLAST of MELO3C019935 vs. NCBI nr
Match: gi|659113628|ref|XP_008456674.1| (PREDICTED: LOW QUALITY PROTEIN: type 1 phosphatases regulator ypi1 [Cucumis melo])

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-08
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1 

Query: 1  MARAPMTASGALTSSSPSLTTTTVILPNGSSSSQ 35
          MARAPMTASGALTSSSPSLTTTTVILPNGSSSSQ
Sbjct: 1  MARAPMTASGALTSSSPSLTTTTVILPNGSSSSQ 34

The following BLAST results are available for this feature:
BLAST of MELO3C019935 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778710584|ref|XP_004140998.2|1.2e-0894.44PREDICTED: type 1 phosphatases regulator ypi1 [Cucumis sativus][more]
gi|659113628|ref|XP_008456674.1|1.6e-08100.00PREDICTED: LOW QUALITY PROTEIN: type 1 phosphatases regulator ypi1 [Cucumis melo... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU47914melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019935T1MELO3C019935T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU47914MU47914transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C019935Cucurbita moschata (Rifu)cmomeB262
MELO3C019935Cucurbita moschata (Rifu)cmomeB667
MELO3C019935Wild cucumber (PI 183967)cpimeB473
MELO3C019935Cucumber (Chinese Long) v2cumeB474
MELO3C019935Watermelon (Charleston Gray)mewcgB300
MELO3C019935Watermelon (97103) v1mewmB308
MELO3C019935Cucurbita pepo (Zucchini)cpemeB164
MELO3C019935Cucurbita pepo (Zucchini)cpemeB396
MELO3C019935Bottle gourd (USVL1VR-Ls)lsimeB470
MELO3C019935Cucumber (Gy14) v2cgybmeB415
MELO3C019935Silver-seed gourdcarmeB0065
MELO3C019935Silver-seed gourdcarmeB0823
MELO3C019935Cucumber (Chinese Long) v3cucmeB484
MELO3C019935Watermelon (97103) v2mewmbB307
MELO3C019935Wax gourdmewgoB326
MELO3C019935Cucumber (Gy14) v1cgymeB588
MELO3C019935Cucurbita maxima (Rimu)cmameB271
MELO3C019935Cucurbita maxima (Rimu)cmameB675