MELO3C019582 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019582
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr11 : 21254583 .. 21254999 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGAAGCCAAAGTAGAAGCAAAGAAGGACAAGAACGCGCGCGCATATATTCTTCAATGCATCCCGAAAGACGTGCTTCTACAAATTGCAAAGAAGAAGACCGCAAAGGAAATATGGGATAGTCTCAAGGAGAAGTACTTGGGCAGCGAGCGGGTGAAGACGGCACGAGTTCAAACCTTGAAGAGAGAGTTTGATGTTCTTCAGATGAAGGAGACCGAGACGATCGATGAGTTCGCAGGAAAAATCAGCGGTCTAGCAAGCAAGTTCTCCACCCTCGGTGTTGCACTTGAGGATTCATCGTTGGTCAAGAAGCTTCTCGACTCCGTCCCTAACAAATATCTTCCCATTATCGCAGGAATCGAGCAATCCAAGATCTCCACACCATGCCATTTGAAGAAGCGATCGGACGAATGA

mRNA sequence

ATGAAAGAAGCCAAAGTAGAAGCAAAGAAGGACAAGAACGCGCGCGCATATATTCTTCAATGCATCCCGAAAGACGTGCTTCTACAAATTGCAAAGAAGAAGACCGCAAAGGAAATATGGGATAGTCTCAAGGAGAAGTACTTGGGCAGCGAGCGGGTGAAGACGGCACGAGTTCAAACCTTGAAGAGAGAGTTTGATGTTCTTCAGATGAAGGAGACCGAGACGATCGATGAGTTCGCAGGAAAAATCAGCGGTCTAGCAAGCAAGTTCTCCACCCTCGGTGTTGCACTTGAGGATTCATCGTTGGTCAAGAAGCTTCTCGACTCCGTCCCTAACAAATATCTTCCCATTATCGCAGGAATCGAGCAATCCAAGATCTCCACACCATGCCATTTGAAGAAGCGATCGGACGAATGA

Coding sequence (CDS)

ATGAAAGAAGCCAAAGTAGAAGCAAAGAAGGACAAGAACGCGCGCGCATATATTCTTCAATGCATCCCGAAAGACGTGCTTCTACAAATTGCAAAGAAGAAGACCGCAAAGGAAATATGGGATAGTCTCAAGGAGAAGTACTTGGGCAGCGAGCGGGTGAAGACGGCACGAGTTCAAACCTTGAAGAGAGAGTTTGATGTTCTTCAGATGAAGGAGACCGAGACGATCGATGAGTTCGCAGGAAAAATCAGCGGTCTAGCAAGCAAGTTCTCCACCCTCGGTGTTGCACTTGAGGATTCATCGTTGGTCAAGAAGCTTCTCGACTCCGTCCCTAACAAATATCTTCCCATTATCGCAGGAATCGAGCAATCCAAGATCTCCACACCATGCCATTTGAAGAAGCGATCGGACGAATGA

Protein sequence

MKEAKVEAKKDKNARAYILQCIPKDVLLQIAKKKTAKEIWDSLKEKYLGSERVKTARVQTLKREFDVLQMKETETIDEFAGKISGLASKFSTLGVALEDSSLVKKLLDSVPNKYLPIIAGIEQSKISTPCHLKKRSDE*

Homology

[Close]

BLAST of MELO3C019582 vs. TrEMBL
Match: Q0JH75_ORYSJ (Os01g0879800 protein OS=Oryza sativa subsp. japonica GN=Os01g0879800 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 6.8e-36
Identity = 79/118 (66.95%), Postives = 96/118 (81.36%), Query Frame = 1


Query: 6   VEAKKDKNARAYILQCIPKDVLLQIAKKKTAKEIWDSLKEKYLGSERVKTARVQTLKREF 65
           V+ KKDK ARA +   +P+DVL QIAKKKTAKE+W+SLK ++LG ERVK ARVQTLK +F
Sbjct: 66  VDIKKDKQARACLFGAVPEDVLQQIAKKKTAKEVWESLKTRFLGVERVKKARVQTLKSDF 125

Query: 66  DVLQMKETETIDEFAGKISGLASKFSTLGVALEDSSLVKKLLDSVPNKYLPIIAGIEQ 124
             L MK+TE+IDEFAGKISGLA+K S LGV ++D   VKKLLDSVP+K+L +IA IEQ
Sbjct: 126 KALHMKDTESIDEFAGKISGLANKLSDLGVTMDDDEQVKKLLDSVPDKFLHVIAAIEQ 183

[Close]

BLAST of MELO3C019582 vs. TrEMBL
Match: Q2QUP7_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os12g15530 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 6.8e-36
Identity = 79/118 (66.95%), Postives = 96/118 (81.36%), Query Frame = 1


Query: 6   VEAKKDKNARAYILQCIPKDVLLQIAKKKTAKEIWDSLKEKYLGSERVKTARVQTLKREF 65
           V+ KKDK ARA +   +P+DVL QIAKKKTAKE+W+SLK ++LG ERVK ARVQTLK +F
Sbjct: 479 VDIKKDKQARACLFGAVPEDVLQQIAKKKTAKEVWESLKTRFLGVERVKKARVQTLKSDF 538

Query: 66  DVLQMKETETIDEFAGKISGLASKFSTLGVALEDSSLVKKLLDSVPNKYLPIIAGIEQ 124
             L MK+TE+IDEFAGKISGLA+K S LGV ++D   VKKLLDSVP+K+L +IA IEQ
Sbjct: 539 KALHMKDTESIDEFAGKISGLANKLSDLGVTMDDDEQVKKLLDSVPDKFLHVIAAIEQ 596

[Close]

BLAST of MELO3C019582 vs. TrEMBL
Match: Q0IZT5_ORYSJ (Os09g0551200 protein OS=Oryza sativa subsp. japonica GN=Os09g0551200 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.6e-32
Identity = 78/118 (66.10%), Postives = 89/118 (75.42%), Query Frame = 1


Query: 6   VEAKKDKNARAYILQCIPKDVLLQIAKKKTAKEIWDSLKEKYLGSERVKTARVQTLKREF 65
           VE KKDK A A +   +P +VL QIA KKTAKE W+SLK ++LG +RVK ARVQTLK EF
Sbjct: 66  VEKKKDKMALACLFGAVPDEVLQQIANKKTAKEAWESLKTRFLGVDRVKKARVQTLKSEF 125

Query: 66  DVLQMKETETIDEFAGKISGLASKFSTLGVALEDSSLVKKLLDSVPNKYLPIIAGIEQ 124
             L MK+TETIDEFAGKISGLA+  S LG  + D  LVKKLLDSVP K+L IIA IEQ
Sbjct: 126 KALCMKKTETIDEFAGKISGLANAMSGLGATMTDDELVKKLLDSVPEKFLHIIAAIEQ 183

[Close]

BLAST of MELO3C019582 vs. TrEMBL
Match: Q2QVG3_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g12910 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.6e-32
Identity = 78/118 (66.10%), Postives = 89/118 (75.42%), Query Frame = 1


Query: 6   VEAKKDKNARAYILQCIPKDVLLQIAKKKTAKEIWDSLKEKYLGSERVKTARVQTLKREF 65
           VE KKDK A A +   +P +VL QIA KKTAKE W+SLK ++LG +RVK ARVQTLK EF
Sbjct: 57  VEKKKDKMALACLFGAVPDEVLQQIANKKTAKEAWESLKTRFLGVDRVKKARVQTLKSEF 116

Query: 66  DVLQMKETETIDEFAGKISGLASKFSTLGVALEDSSLVKKLLDSVPNKYLPIIAGIEQ 124
             L MK+TETIDEFAGKISGLA+  S LG  + D  LVKKLLDSVP K+L IIA IEQ
Sbjct: 117 KALCMKKTETIDEFAGKISGLANAMSGLGATMTDDELVKKLLDSVPEKFLHIIAAIEQ 174

[Close]

BLAST of MELO3C019582 vs. TrEMBL
Match: C6JSM1_SORBI (Putative uncharacterized protein Sb1475s002010 OS=Sorghum bicolor GN=Sb1475s002010 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.0e-32
Identity = 63/121 (52.07%), Postives = 99/121 (81.82%), Query Frame = 1


Query: 3   EAKVEAKKDKNARAYILQCIPKDVLLQIAKKKTAKEIWDSLKEKYLGSERVKTARVQTLK 62
           EA    KKD  A+A++LQC+P D+L+Q+A KKT KE+WD+LK +++G++RVK AR+QTLK
Sbjct: 61  EAAEAKKKDTKAKAHLLQCLPDDLLMQVAGKKTGKEVWDALKARHVGADRVKEARLQTLK 120

Query: 63  REFDVLQMKETETIDEFAGKISGLASKFSTLGVALEDSSLVKKLLDSVPNKYLPIIAGIE 122
            EFD ++MK+ E++D++ G+++G++ ++  LG +LED++LVKKL D+VP +Y+ +IAGIE
Sbjct: 121 SEFDAMRMKDEESLDQYVGRLTGMSVRYGNLGGSLEDAALVKKLFDTVPGRYIHVIAGIE 180

Query: 123 Q 124
           Q
Sbjct: 181 Q 181

[Close]

BLAST of MELO3C019582 vs. NCBI nr
Match: gi|778722274|ref|XP_011658449.1| (PREDICTED: uncharacterized protein LOC105436008 [Cucumis sativus])

HSP 1 Score: 179.1 bits (453), Expect = 5.3e-42
Identity = 94/119 (78.99%), Postives = 105/119 (88.24%), Query Frame = 1


Query: 5   KVEAKKDKNARAYILQCIPKDVLLQIAKKKTAKEIWDSLKEKYLGSERVKTARVQTLKRE 64
           +V+ KKDK A  YILQCI +DVLLQIAKKK+AKEIWD+LK +YLGSERVK ARV  LK E
Sbjct: 53  EVDVKKDKKACVYILQCILEDVLLQIAKKKSAKEIWDNLKTRYLGSERVKMARVGILKSE 112

Query: 65  FDVLQMKETETIDEFAGKISGLASKFSTLGVALEDSSLVKKLLDSVPNKYLPIIAGIEQ 124
           F+VL+MKETETIDEFAGKIS LASKF+TLGVALEDSSLVKKLLDSVP+KYL I+  IEQ
Sbjct: 113 FNVLRMKETETIDEFAGKISKLASKFTTLGVALEDSSLVKKLLDSVPDKYLLIVTRIEQ 171

[Close]

BLAST of MELO3C019582 vs. NCBI nr
Match: gi|659114874|ref|XP_008457267.1| (PREDICTED: uncharacterized protein LOC103496995 [Cucumis melo])

HSP 1 Score: 165.2 bits (417), Expect = 7.9e-38
Identity = 87/110 (79.09%), Postives = 96/110 (87.27%), Query Frame = 1


Query: 14  ARAYILQCIPKDVLLQIAKKKTAKEIWDSLKEKYLGSERVKTARVQTLKREFDVLQMKET 73
           A  YILQCIPKDVLLQIA+KKTAK+IWDSLK +YLGS++VK ARVQTLK  FDVL+MKET
Sbjct: 2   ACVYILQCIPKDVLLQIARKKTAKKIWDSLKTRYLGSKQVKMARVQTLKSVFDVLRMKET 61

Query: 74  ETIDEFAGKISGLASKFSTLGVALEDSSLVKKLLDSVPNKYLPIIAGIEQ 124
           ETI+EF  KI+ LASKFSTLGVALEDSSLVKKLLD V  KYLPI  GI+Q
Sbjct: 62  ETIEEFTEKINRLASKFSTLGVALEDSSLVKKLLDFVLKKYLPIDVGIKQ 111

[Close]

BLAST of MELO3C019582 vs. NCBI nr
Match: gi|77554492|gb|ABA97288.1| (retrotransposon protein, putative, Ty1-copia subclass, expressed [Oryza sativa Japonica Group])

HSP 1 Score: 158.3 bits (399), Expect = 9.7e-36
Identity = 79/118 (66.95%), Postives = 96/118 (81.36%), Query Frame = 1


Query: 6   VEAKKDKNARAYILQCIPKDVLLQIAKKKTAKEIWDSLKEKYLGSERVKTARVQTLKREF 65
           V+ KKDK ARA +   +P+DVL QIAKKKTAKE+W+SLK ++LG ERVK ARVQTLK +F
Sbjct: 479 VDIKKDKQARACLFGAVPEDVLQQIAKKKTAKEVWESLKTRFLGVERVKKARVQTLKSDF 538

Query: 66  DVLQMKETETIDEFAGKISGLASKFSTLGVALEDSSLVKKLLDSVPNKYLPIIAGIEQ 124
             L MK+TE+IDEFAGKISGLA+K S LGV ++D   VKKLLDSVP+K+L +IA IEQ
Sbjct: 539 KALHMKDTESIDEFAGKISGLANKLSDLGVTMDDDEQVKKLLDSVPDKFLHVIAAIEQ 596

[Close]

BLAST of MELO3C019582 vs. NCBI nr
Match: gi|113534520|dbj|BAF06903.1| (Os01g0879800 [Oryza sativa Japonica Group])

HSP 1 Score: 158.3 bits (399), Expect = 9.7e-36
Identity = 79/118 (66.95%), Postives = 96/118 (81.36%), Query Frame = 1


Query: 6   VEAKKDKNARAYILQCIPKDVLLQIAKKKTAKEIWDSLKEKYLGSERVKTARVQTLKREF 65
           V+ KKDK ARA +   +P+DVL QIAKKKTAKE+W+SLK ++LG ERVK ARVQTLK +F
Sbjct: 66  VDIKKDKQARACLFGAVPEDVLQQIAKKKTAKEVWESLKTRFLGVERVKKARVQTLKSDF 125

Query: 66  DVLQMKETETIDEFAGKISGLASKFSTLGVALEDSSLVKKLLDSVPNKYLPIIAGIEQ 124
             L MK+TE+IDEFAGKISGLA+K S LGV ++D   VKKLLDSVP+K+L +IA IEQ
Sbjct: 126 KALHMKDTESIDEFAGKISGLANKLSDLGVTMDDDEQVKKLLDSVPDKFLHVIAAIEQ 183

[Close]

BLAST of MELO3C019582 vs. NCBI nr
Match: gi|77553519|gb|ABA96315.1| (retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group])

HSP 1 Score: 147.1 bits (370), Expect = 2.2e-32
Identity = 78/118 (66.10%), Postives = 89/118 (75.42%), Query Frame = 1


Query: 6   VEAKKDKNARAYILQCIPKDVLLQIAKKKTAKEIWDSLKEKYLGSERVKTARVQTLKREF 65
           VE KKDK A A +   +P +VL QIA KKTAKE W+SLK ++LG +RVK ARVQTLK EF
Sbjct: 57  VEKKKDKMALACLFGAVPDEVLQQIANKKTAKEAWESLKTRFLGVDRVKKARVQTLKSEF 116

Query: 66  DVLQMKETETIDEFAGKISGLASKFSTLGVALEDSSLVKKLLDSVPNKYLPIIAGIEQ 124
             L MK+TETIDEFAGKISGLA+  S LG  + D  LVKKLLDSVP K+L IIA IEQ
Sbjct: 117 KALCMKKTETIDEFAGKISGLANAMSGLGATMTDDELVKKLLDSVPEKFLHIIAAIEQ 174

The following BLAST results are available for this feature:

BLAST of MELO3C019582 vs. TrEMBL


Match Name	E-value	Identity	Description
Q0JH75_ORYSJ	6.8e-36	66.95	Os01g0879800 protein OS=Oryza sativa subsp. japonica GN=Os01g0879800 PE=4 SV=1	[more]
Q2QUP7_ORYSJ	6.8e-36	66.95	Retrotransposon protein, putative, Ty1-copia subclass, expressed OS=Oryza sativa...	[more]
Q0IZT5_ORYSJ	1.6e-32	66.10	Os09g0551200 protein OS=Oryza sativa subsp. japonica GN=Os09g0551200 PE=4 SV=1	[more]
Q2QVG3_ORYSJ	1.6e-32	66.10	Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. jap...	[more]
C6JSM1_SORBI	2.0e-32	52.07	Putative uncharacterized protein Sb1475s002010 OS=Sorghum bicolor GN=Sb1475s0020...	[more]

BLAST of MELO3C019582 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778722274\|ref\|XP_011658449.1\|	5.3e-42	78.99	PREDICTED: uncharacterized protein LOC105436008 [Cucumis sativus]	[more]
gi\|659114874\|ref\|XP_008457267.1\|	7.9e-38	79.09	PREDICTED: uncharacterized protein LOC103496995 [Cucumis melo]	[more]
gi\|77554492\|gb\|ABA97288.1\|	9.7e-36	66.95	retrotransposon protein, putative, Ty1-copia subclass, expressed [Oryza sativa J...	[more]
gi\|113534520\|dbj\|BAF06903.1\|	9.7e-36	66.95	Os01g0879800 [Oryza sativa Japonica Group]	[more]
gi\|77553519\|gb\|ABA96315.1\|	2.2e-32	66.10	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Gro...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0031410	cytoplasmic vesicle
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019582T1	MELO3C019582T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 3..124 score: 2.4
None	No IPR available	PANTHER	PTHR11439:SF172	SUBFAMILY NOT NAMED	coord: 3..124 score: 2.4
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 8..125 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019582	Cucurbita moschata (Rifu)	cmomeB494
MELO3C019582	Cucurbita moschata (Rifu)	cmomeB539
MELO3C019582	Wild cucumber (PI 183967)	cpimeB420
MELO3C019582	Cucumber (Chinese Long) v2	cumeB443
MELO3C019582	Watermelon (Charleston Gray)	mewcgB107
MELO3C019582	Watermelon (97103) v1	mewmB121
MELO3C019582	Cucurbita pepo (Zucchini)	cpemeB247
MELO3C019582	Cucurbita pepo (Zucchini)	cpemeB655
MELO3C019582	Bottle gourd (USVL1VR-Ls)	lsimeB043
MELO3C019582	Cucumber (Gy14) v2	cgybmeB368
MELO3C019582	Silver-seed gourd	carmeB0339
MELO3C019582	Cucumber (Chinese Long) v3	cucmeB432
MELO3C019582	Watermelon (97103) v2	mewmbB109
MELO3C019582	Wax gourd	mewgoB113
MELO3C019582	Cucumber (Gy14) v1	cgymeB180
MELO3C019582	Cucurbita maxima (Rimu)	cmameB501