MELO3C019523.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019523.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Transcription factor
Location	chr06 : 12403263 .. 12403567 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAAAGGCGTTGTTGAGTTAGGAAGAGAAAGGGAGAGACAAAGAAGACAAGAAATCGGTGCTCTTTATATGTCTCTAAGAACTTTACTTCCTCTTGAATTGATCAAGGTAAATTGTGGGACTGTGCACAGGGGAAGAGATAAACGGAGGGAGAAGAAATGAAAAATGAAAGATCAAGAACTCAATGGCGACGATATGGGTCTCCTCGCCGTGGGTCTCTAGCACCGAGAAGAAAGGACGTGGAGATGAGAAGAATGGGGTTAAGGTTGGGGTTTTCATCATGCGTCGTTCGTTGTTCGTGA

mRNA sequence

ATGGACAAAGGCGTTGTTGAGTTAGGAAGAGAAAGGGAGAGACAAAGAAGACAAGAAATCGGTGCTCTTTATATGTCTCTAAGAACTTTACTTCCTCTTGAATTGATCAAGGTAAATTGTGGGACTGTGCACAGGGGAAGAGATAAACGGAGGGAGAAGAAATGAAAAATGAAAGATCAAGAACTCAATGGCGACGATATGGGTCTCCTCGCCGTGGGTCTCTAGCACCGAGAAGAAAGGACGTGGAGATGAGAAGAATGGGGTTAAGGTTGGGGTTTTCATCATGCGTCGTTCGTTGTTCGTGA

Coding sequence (CDS)

ATGGACAAAGGCGTTGTTGAGTTAGGAAGAGAAAGGGAGAGACAAAGAAGACAAGAAATCGGTGCTCTTTATATGTCTCTAAGAACTTTACTTCCTCTTGAATTGATCAAGGTAAATTGTGGGACTGTGCACAGGGGAAGAGATAAACGGAGGGAGAAGAAATGA

Protein sequence

MDKGVVELGRERERQRRQEIGALYMSLRTLLPLELIKVNCGTVHRGRDKRREKK

Homology

[Close]

BLAST of MELO3C019523.2 vs. NCBI nr
Match: XP_022945714.1 (transcription factor bHLH118 [Cucurbita moschata])

HSP 1 Score: 53.1 bits (126), Expect = 3.3e-04
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 2   DKGVVELGRERERQRRQEIGALYMSLRTLLPLELIK 38
           D  +  + RERERQRRQE+GALYMSLRTLLPLE IK
Sbjct: 71  DHQIKLMHRERERQRRQEMGALYMSLRTLLPLEFIK 106

[Close]

BLAST of MELO3C019523.2 vs. NCBI nr
Match: XP_022967981.1 (transcription factor bHLH118-like [Cucurbita maxima])

HSP 1 Score: 53.1 bits (126), Expect = 3.3e-04
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 2   DKGVVELGRERERQRRQEIGALYMSLRTLLPLELIK 38
           D  +  + RERERQRRQE+GALYMSLRTLLPLE IK
Sbjct: 71  DHQIKLMHRERERQRRQEMGALYMSLRTLLPLEFIK 106

[Close]

BLAST of MELO3C019523.2 vs. NCBI nr
Match: XP_023541045.1 (transcription factor bHLH118 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 53.1 bits (126), Expect = 3.3e-04
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 2   DKGVVELGRERERQRRQEIGALYMSLRTLLPLELIK 38
           D  +  + RERERQRRQE+GALYMSLRTLLPLE IK
Sbjct: 72  DHQIKLMHRERERQRRQEMGALYMSLRTLLPLEFIK 107

[Close]

BLAST of MELO3C019523.2 vs. NCBI nr
Match: XP_022141227.1 (transcription factor bHLH118-like [Momordica charantia] >XP_022141228.1 transcription factor bHLH118-like [Momordica charantia] >XP_022141229.1 transcription factor bHLH118-like [Momordica charantia])

HSP 1 Score: 52.4 bits (124), Expect = 5.7e-04
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 1   MDKGVVELGRERERQRRQEIGALYMSLRTLLPLELIK 38
           +D     + RERERQRRQE+G+LYMSLRTLLPLE IK
Sbjct: 81  LDHNAKIMHRERERQRRQEMGSLYMSLRTLLPLEFIK 117

[Close]

BLAST of MELO3C019523.2 vs. TAIR10
Match: AT5G51780.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 41.2 bits (95), Expect = 2.4e-04
Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = 0


Query: 10 RERERQRRQEIGALYMSLRTLLPLELIK 38
          RE ERQRRQE+ +LY SLR+LLPL  IK
Sbjct: 7  RETERQRRQEMASLYASLRSLLPLHFIK 34

The following BLAST results are available for this feature:

BLAST of MELO3C019523.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945714.1	3.3e-04	75.00	transcription factor bHLH118 [Cucurbita moschata]	[more]
XP_022967981.1	3.3e-04	75.00	transcription factor bHLH118-like [Cucurbita maxima]	[more]
XP_023541045.1	3.3e-04	75.00	transcription factor bHLH118 [Cucurbita pepo subsp. pepo]	[more]
XP_022141227.1	5.7e-04	70.27	transcription factor bHLH118-like [Momordica charantia] >XP_022141228.1 transcri...	[more]

BLAST of MELO3C019523.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G51780.1	2.4e-04	71.43	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

BLAST of MELO3C019523.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C019523.2 vs. TrEMBL


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

Vocabulary: **INTERPRO**
Term	Definition
IPR036638	HLH_DNA-bd_sf
IPR011598	bHLH_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019523.2.1	MELO3C019523.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 11..53 e-value: 8.3E-5 score: 22.4
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 10..34

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019523.2	Cucumber (Gy14) v2	cgybmedB215
MELO3C019523.2	Cucumber (Gy14) v2	cgybmedB492
MELO3C019523.2	Cucumber (Gy14) v1	cgymedB379
MELO3C019523.2	Cucumber (Gy14) v1	cgymedB412
MELO3C019523.2	Cucurbita maxima (Rimu)	cmamedB346
MELO3C019523.2	Cucurbita maxima (Rimu)	cmamedB560
MELO3C019523.2	Cucurbita maxima (Rimu)	cmamedB777
MELO3C019523.2	Cucurbita moschata (Rifu)	cmomedB332
MELO3C019523.2	Cucurbita moschata (Rifu)	cmomedB547
MELO3C019523.2	Cucurbita moschata (Rifu)	cmomedB774
MELO3C019523.2	Cucurbita pepo (Zucchini)	cpemedB234
MELO3C019523.2	Cucurbita pepo (Zucchini)	cpemedB481
MELO3C019523.2	Wild cucumber (PI 183967)	cpimedB239
MELO3C019523.2	Wild cucumber (PI 183967)	cpimedB552
MELO3C019523.2	Cucumber (Chinese Long) v2	cumedB238
MELO3C019523.2	Cucumber (Chinese Long) v2	cumedB534
MELO3C019523.2	Melon (DHL92) v3.6.1	medmedB091
MELO3C019523.2	Bottle gourd (USVL1VR-Ls)	lsimedB280
MELO3C019523.2	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C019523.2	Watermelon (Charleston Gray)	medwcgB413
MELO3C019523.2	Watermelon (Charleston Gray)	medwcgB417
MELO3C019523.2	Watermelon (97103) v1	medwmB448
MELO3C019523.2	Watermelon (97103) v1	medwmB472
MELO3C019523.2	Silver-seed gourd	carmedB0220
MELO3C019523.2	Silver-seed gourd	carmedB0384
MELO3C019523.2	Cucumber (Chinese Long) v3	cucmedB246
MELO3C019523.2	Cucumber (Chinese Long) v3	cucmedB566
MELO3C019523.2	Watermelon (97103) v2	medwmbB421
MELO3C019523.2	Watermelon (97103) v2	medwmbB424
MELO3C019523.2	Wax gourd	medwgoB531
MELO3C019523.2	Wax gourd	medwgoB558