MELO3C019511 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019511
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	DNA/RNA helicase protein
Location	chr6 : 11002307 .. 11002908 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATCAGACGCTAGATTTGTTTGCTCAACTGTGTCGTGAAAGGAGGTACCCATATTTAAGGCTTGATGGATCCACATCAATCAGTAAAAGACAAAAGTTGGTCAACCGTTTTAATGATCTGTCAAAGGTATGCAGCCTTTATAAGATTCGATTTGGTTTTATTTTTCTATTCCTTTAGCGCAAACTGGACGTATAAATTGCTTCCTGCTTATTAGACTTTCAAGGAAGTCCATGTGGGGATAATATTGTGCTAAAGCACCGTTTTATCAGGATGAGTTCGTTTTTCTATTGAGCAGCAAGGCTGGTGGATGTGGTCTGAATTTGATTGGTGGAAATCGTTTAGTTCTGTTTGATCCTGACTGGAACCCTGCAAATGATAAGCAAGTAAACCTACCGCTATGTGGAGCCCCTGGTTTGGACTCATTGAATTCTAGAATATGAATATGCAGTCTTCCTTCTGATGTTTTCCTTGTTTTCATCTGTCTTACCATACGTGCATAGGCTGCTGCAAGAGTGTGGAGGGACGGACAAAAGAAGAGAGTATTCATCTACAGATTTTTAAGTACCGGAACGATTGAAGAAAAGGTTCGAACATTGTAA

mRNA sequence

ATGTATCAGACGCTAGATTTGTTTGCTCAACTGTGTCGTGAAAGGAGGTACCCATATTTAAGGCTTGATGGATCCACATCAATCAGTAAAAGACAAAAGTTGGTCAACCGTTTTAATGATCTGTCAAAGGATGAGTTCGTTTTTCTATTGAGCAGCAAGGCTGGTGGATGTGGTCTGAATTTGATTGGTGGAAATCGTTTAGTTCTGTTTGATCCTGACTGGAACCCTGCAAATGATAAGCAAGCTGCTGCAAGAGTGTGGAGGGACGGACAAAAGAAGAGAGTATTCATCTACAGATTTTTAAGTACCGGAACGATTGAAGAAAAGGTTCGAACATTGTAA

Coding sequence (CDS)

ATGTATCAGACGCTAGATTTGTTTGCTCAACTGTGTCGTGAAAGGAGGTACCCATATTTAAGGCTTGATGGATCCACATCAATCAGTAAAAGACAAAAGTTGGTCAACCGTTTTAATGATCTGTCAAAGGATGAGTTCGTTTTTCTATTGAGCAGCAAGGCTGGTGGATGTGGTCTGAATTTGATTGGTGGAAATCGTTTAGTTCTGTTTGATCCTGACTGGAACCCTGCAAATGATAAGCAAGCTGCTGCAAGAGTGTGGAGGGACGGACAAAAGAAGAGAGTATTCATCTACAGATTTTTAAGTACCGGAACGATTGAAGAAAAGGTTCGAACATTGTAA

Protein sequence

MYQTLDLFAQLCRERRYPYLRLDGSTSISKRQKLVNRFNDLSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVRTL*

Homology

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BLAST of MELO3C019511 vs. Swiss-Prot
Match: RAD54_ORYSJ (DNA repair and recombination protein RAD54 OS=Oryza sativa subsp. japonica GN=RAD54 PE=1 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 5.0e-54
Identity = 99/108 (91.67%), Postives = 105/108 (97.22%), Query Frame = 1


Query: 3   QTLDLFAQLCRERRYPYLRLDGSTSISKRQKLVNRFNDLSKDEFVFLLSSKAGGCGLNLI 62
           QTLDLFAQLCRERRYPY+RLDG+TSI+KRQKLVN+FND S+DEFVFLLSSKAGGCGLNL+
Sbjct: 617 QTLDLFAQLCRERRYPYIRLDGATSINKRQKLVNQFNDPSRDEFVFLLSSKAGGCGLNLV 676

Query: 63  GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV 111
           GGNRL+LFDPDWNPANDKQAAARVWRDGQKKRV+IYRFLSTGTIEEKV
Sbjct: 677 GGNRLILFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTIEEKV 724

[Close]

BLAST of MELO3C019511 vs. Swiss-Prot
Match: CHR25_ARATH (Protein CHROMATIN REMODELING 25 OS=Arabidopsis thaliana GN=CHR25 PE=1 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 7.2e-53
Identity = 99/108 (91.67%), Postives = 102/108 (94.44%), Query Frame = 1


Query: 3   QTLDLFAQLCRERRYPYLRLDGSTSISKRQKLVNRFNDLSKDEFVFLLSSKAGGCGLNLI 62
           QTLDLFAQLCRERRYP+LRLDGST+ISKRQKLVNR ND +KDEF FLLSSKAGGCGLNLI
Sbjct: 562 QTLDLFAQLCRERRYPFLRLDGSTTISKRQKLVNRLNDPTKDEFAFLLSSKAGGCGLNLI 621

Query: 63  GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV 111
           G NRLVLFDPDWNPANDKQAAARVWRDGQKKRV++YRFLSTGTIEEKV
Sbjct: 622 GANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYVYRFLSTGTIEEKV 669

[Close]

BLAST of MELO3C019511 vs. Swiss-Prot
Match: RAD54_CHICK (DNA repair and recombination protein RAD54-like (Fragment) OS=Gallus gallus GN=RAD54L PE=2 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 3.9e-43
Identity = 82/108 (75.93%), Postives = 90/108 (83.33%), Query Frame = 1


Query: 3   QTLDLFAQLCRERRYPYLRLDGSTSISKRQKLVNRFNDLSKDEFVFLLSSKAGGCGLNLI 62
           QTLDLF +LCR RRY Y+RLDG+ SI KR K+V RFN  S  EF+F+LSSKAGGCGLNLI
Sbjct: 513 QTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSSKAGGCGLNLI 572

Query: 63  GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV 111
           G NRLV+FDPDWNPAND+QA ARVWRDGQKK  +IYR LSTGTIEEK+
Sbjct: 573 GANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKI 620

[Close]

BLAST of MELO3C019511 vs. Swiss-Prot
Match: RAD54_HUMAN (DNA repair and recombination protein RAD54-like OS=Homo sapiens GN=RAD54L PE=1 SV=2)

HSP 1 Score: 172.2 bits (435), Expect = 3.3e-42
Identity = 81/108 (75.00%), Postives = 89/108 (82.41%), Query Frame = 1


Query: 3   QTLDLFAQLCRERRYPYLRLDGSTSISKRQKLVNRFNDLSKDEFVFLLSSKAGGCGLNLI 62
           QTLDLF +LCR RRY Y+RLDG+ SI KR K+V RFN  S  +FVF+LSSKAGGCGLNLI
Sbjct: 524 QTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLI 583

Query: 63  GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV 111
           G NRLV+FDPDWNPAND+QA ARVWRDGQKK  +IYR LS GTIEEK+
Sbjct: 584 GANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKI 631

[Close]

BLAST of MELO3C019511 vs. Swiss-Prot
Match: RAD54_SCHPO (DNA repair protein rhp54 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp54 PE=1 SV=2)

HSP 1 Score: 171.0 bits (432), Expect = 7.4e-42
Identity = 79/107 (73.83%), Postives = 90/107 (84.11%), Query Frame = 1


Query: 4   TLDLFAQLCRERRYPYLRLDGSTSISKRQKLVNRFNDLSKDEFVFLLSSKAGGCGLNLIG 63
           TLDLF QLCR R Y  LRLDG+ +++KRQ+LV+ FND  KD FVFLLSSKAGGCG+NLIG
Sbjct: 639 TLDLFEQLCRARGYKALRLDGTMNVNKRQRLVDTFNDPEKDAFVFLLSSKAGGCGINLIG 698

Query: 64  GNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV 111
            NRL+LFDPDWNPA D+QA ARVWRDGQKK  F+YRF++TGTIEEK+
Sbjct: 699 ANRLILFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKI 745

[Close]

BLAST of MELO3C019511 vs. TrEMBL
Match: A0A0A0L9A1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G207350 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 9.1e-55
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 3   QTLDLFAQLCRERRYPYLRLDGSTSISKRQKLVNRFNDLSKDEFVFLLSSKAGGCGLNLI 62
           QTLDLFAQLCRERRYPYLRLDG+TSISKRQKLVNRFNDLSKDEFVFLLSSKAGGCGLNLI
Sbjct: 563 QTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNRFNDLSKDEFVFLLSSKAGGCGLNLI 622

Query: 63  GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV 111
           GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV
Sbjct: 623 GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV 670

[Close]

BLAST of MELO3C019511 vs. TrEMBL
Match: A0A0B0MRC2_GOSAR (DNA repair and recombination protein RAD54-like protein OS=Gossypium arboreum GN=F383_25257 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.2e-53
Identity = 104/108 (96.30%), Postives = 107/108 (99.07%), Query Frame = 1


Query: 3   QTLDLFAQLCRERRYPYLRLDGSTSISKRQKLVNRFNDLSKDEFVFLLSSKAGGCGLNLI 62
           QTLDLFAQLCRERRYPYLRLDG+TSISKRQKLVNRFND +KDEFVFLLSSKAGGCGLNLI
Sbjct: 435 QTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNRFNDSTKDEFVFLLSSKAGGCGLNLI 494

Query: 63  GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV 111
           GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRV+IYRFLSTGTIEEKV
Sbjct: 495 GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTIEEKV 542

[Close]

BLAST of MELO3C019511 vs. TrEMBL
Match: A0A0D2VAF4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G043100 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.2e-53
Identity = 104/108 (96.30%), Postives = 107/108 (99.07%), Query Frame = 1


Query: 3   QTLDLFAQLCRERRYPYLRLDGSTSISKRQKLVNRFNDLSKDEFVFLLSSKAGGCGLNLI 62
           QTLDLFAQLCRERRYPYLRLDG+TSISKRQKLVNRFND +KDEFVFLLSSKAGGCGLNLI
Sbjct: 334 QTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNRFNDSTKDEFVFLLSSKAGGCGLNLI 393

Query: 63  GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV 111
           GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRV+IYRFLSTGTIEEKV
Sbjct: 394 GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTIEEKV 441

[Close]

BLAST of MELO3C019511 vs. TrEMBL
Match: A0A0D2W2R4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G043100 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.2e-53
Identity = 104/108 (96.30%), Postives = 107/108 (99.07%), Query Frame = 1


Query: 3   QTLDLFAQLCRERRYPYLRLDGSTSISKRQKLVNRFNDLSKDEFVFLLSSKAGGCGLNLI 62
           QTLDLFAQLCRERRYPYLRLDG+TSISKRQKLVNRFND +KDEFVFLLSSKAGGCGLNLI
Sbjct: 579 QTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNRFNDSTKDEFVFLLSSKAGGCGLNLI 638

Query: 63  GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV 111
           GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRV+IYRFLSTGTIEEKV
Sbjct: 639 GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTIEEKV 686

[Close]

BLAST of MELO3C019511 vs. TrEMBL
Match: A0A061E0V1_THECC (RAD54 isoform 3 OS=Theobroma cacao GN=TCM_007044 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 2.9e-53
Identity = 104/108 (96.30%), Postives = 107/108 (99.07%), Query Frame = 1


Query: 3   QTLDLFAQLCRERRYPYLRLDGSTSISKRQKLVNRFNDLSKDEFVFLLSSKAGGCGLNLI 62
           QTLDLFAQLCRERRYPYLRLDG+TSISKRQKLVNRFND +KDEFVFLLSSKAGGCGLNLI
Sbjct: 580 QTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNRFNDPTKDEFVFLLSSKAGGCGLNLI 639

Query: 63  GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV 111
           GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRV+IYRFLSTGTIEEKV
Sbjct: 640 GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTIEEKV 687

[Close]

BLAST of MELO3C019511 vs. TAIR10
Match: AT3G19210.1 (AT3G19210.1 homolog of RAD54)

HSP 1 Score: 207.6 bits (527), Expect = 4.0e-54
Identity = 99/108 (91.67%), Postives = 102/108 (94.44%), Query Frame = 1


Query: 3   QTLDLFAQLCRERRYPYLRLDGSTSISKRQKLVNRFNDLSKDEFVFLLSSKAGGCGLNLI 62
           QTLDLFAQLCRERRYP+LRLDGST+ISKRQKLVNR ND +KDEF FLLSSKAGGCGLNLI
Sbjct: 562 QTLDLFAQLCRERRYPFLRLDGSTTISKRQKLVNRLNDPTKDEFAFLLSSKAGGCGLNLI 621

Query: 63  GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV 111
           G NRLVLFDPDWNPANDKQAAARVWRDGQKKRV++YRFLSTGTIEEKV
Sbjct: 622 GANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYVYRFLSTGTIEEKV 669

[Close]

BLAST of MELO3C019511 vs. TAIR10
Match: AT2G18760.1 (AT2G18760.1 chromatin remodeling 8)

HSP 1 Score: 120.9 bits (302), Expect = 5.0e-28
Identity = 56/108 (51.85%), Postives = 72/108 (66.67%), Query Frame = 1


Query: 3   QTLDLFAQLCRERRYPYLRLDGSTSISKRQKLVNRFNDLSKDEFVFLLSSKAGGCGLNLI 62
           Q LD+         Y Y R+DG T + +R  L++ FN+ S+D FVF+L++K GG G NL 
Sbjct: 754 QMLDILESFLVANEYSYRRMDGLTPVKQRMALIDEFNN-SEDMFVFVLTTKVGGLGTNLT 813

Query: 63  GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV 111
           G NR+++FDPDWNP+ND QA  R WR GQKK V +YR ++ GTIEEKV
Sbjct: 814 GANRVIIFDPDWNPSNDMQARERAWRIGQKKDVTVYRLITRGTIEEKV 860

[Close]

BLAST of MELO3C019511 vs. TAIR10
Match: AT1G03750.1 (AT1G03750.1 switch 2)

HSP 1 Score: 107.8 bits (268), Expect = 4.4e-24
Identity = 54/108 (50.00%), Postives = 73/108 (67.59%), Query Frame = 1


Query: 5   LDLFAQLCRERRYPYLRLDGSTSISKRQKLVNRFNDLSKDEFVFLLSSKAGGCGLNLIGG 64
           LD+  +    + Y + RLDGST  + RQ LV+ FN  S  + VFL+S+KAGG GLNL+  
Sbjct: 557 LDILEKFLIRKGYSFARLDGSTPTNLRQSLVDDFN-ASPSKQVFLISTKAGGLGLNLVSA 616

Query: 65  NRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVRT 113
           NR+V+FDP+WNP++D QA  R +R GQK+ V ++R LS G++EE V T
Sbjct: 617 NRVVIFDPNWNPSHDLQAQDRSFRYGQKRHVVVFRLLSAGSLEELVYT 663

[Close]

BLAST of MELO3C019511 vs. TAIR10
Match: AT2G13370.1 (AT2G13370.1 chromatin remodeling 5)

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-22
Identity = 49/110 (44.55%), Postives = 73/110 (66.36%), Query Frame = 1


Query: 1    MYQTLDLFAQLCRERRYPYLRLDGSTSISKRQKLVNRFNDLSKDEFVFLLSSKAGGCGLN 60
            M + LD+ A+    R + + RLDGST    RQ+ ++ FN  + D+F FLLS++AGG G+N
Sbjct: 964  MVRMLDILAEYLSLRGFQFQRLDGSTKAELRQQAMDHFNAPASDDFCFLLSTRAGGLGIN 1023

Query: 61   LIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV 111
            L   + +V+FD DWNP ND QA +R  R GQ++ V IYRF+++ ++EE++
Sbjct: 1024 LATADTVVIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEEI 1073

[Close]

BLAST of MELO3C019511 vs. TAIR10
Match: AT2G25170.1 (AT2G25170.1 chromatin remodeling factor CHD3 (PICKLE))

HSP 1 Score: 101.3 bits (251), Expect = 4.1e-22
Identity = 47/109 (43.12%), Postives = 69/109 (63.30%), Query Frame = 1


Query: 5   LDLFAQLCRERRYPYLRLDGSTSISKRQKLVNRFNDLSKDEFVFLLSSKAGGCGLNLIGG 64
           LDL    C  +++ Y R+DG    ++RQ  ++RFN  + ++F FLLS++AGG G+NL   
Sbjct: 624 LDLLEDYCTHKKWQYERIDGKVGGAERQIRIDRFNAKNSNKFCFLLSTRAGGLGINLATA 683

Query: 65  NRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKVRTL 114
           + ++++D DWNP  D QA AR  R GQ  +V IYR ++ GTIEE++  L
Sbjct: 684 DTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLINRGTIEERMMQL 732

[Close]

BLAST of MELO3C019511 vs. NCBI nr
Match: gi|659112236|ref|XP_008456128.1| (PREDICTED: DNA repair and recombination protein RAD54 isoform X2 [Cucumis melo])

HSP 1 Score: 221.9 bits (564), Expect = 5.9e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 3   QTLDLFAQLCRERRYPYLRLDGSTSISKRQKLVNRFNDLSKDEFVFLLSSKAGGCGLNLI 62
           QTLDLFAQLCRERRYPYLRLDGSTSISKRQKLVNRFNDLSKDEFVFLLSSKAGGCGLNLI
Sbjct: 563 QTLDLFAQLCRERRYPYLRLDGSTSISKRQKLVNRFNDLSKDEFVFLLSSKAGGCGLNLI 622

Query: 63  GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV 111
           GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV
Sbjct: 623 GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV 670

[Close]

BLAST of MELO3C019511 vs. NCBI nr
Match: gi|659112234|ref|XP_008456127.1| (PREDICTED: DNA repair and recombination protein RAD54 isoform X1 [Cucumis melo])

HSP 1 Score: 221.9 bits (564), Expect = 5.9e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 3   QTLDLFAQLCRERRYPYLRLDGSTSISKRQKLVNRFNDLSKDEFVFLLSSKAGGCGLNLI 62
           QTLDLFAQLCRERRYPYLRLDGSTSISKRQKLVNRFNDLSKDEFVFLLSSKAGGCGLNLI
Sbjct: 563 QTLDLFAQLCRERRYPYLRLDGSTSISKRQKLVNRFNDLSKDEFVFLLSSKAGGCGLNLI 622

Query: 63  GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV 111
           GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV
Sbjct: 623 GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV 670

[Close]

BLAST of MELO3C019511 vs. NCBI nr
Match: gi|449445882|ref|XP_004140701.1| (PREDICTED: protein CHROMATIN REMODELING 25 [Cucumis sativus])

HSP 1 Score: 220.7 bits (561), Expect = 1.3e-54
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 3   QTLDLFAQLCRERRYPYLRLDGSTSISKRQKLVNRFNDLSKDEFVFLLSSKAGGCGLNLI 62
           QTLDLFAQLCRERRYPYLRLDG+TSISKRQKLVNRFNDLSKDEFVFLLSSKAGGCGLNLI
Sbjct: 563 QTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNRFNDLSKDEFVFLLSSKAGGCGLNLI 622

Query: 63  GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV 111
           GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV
Sbjct: 623 GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV 670

[Close]

BLAST of MELO3C019511 vs. NCBI nr
Match: gi|719969749|ref|XP_010269327.1| (PREDICTED: protein CHROMATIN REMODELING 25 [Nelumbo nucifera])

HSP 1 Score: 218.0 bits (554), Expect = 8.5e-54
Identity = 105/108 (97.22%), Postives = 107/108 (99.07%), Query Frame = 1


Query: 3   QTLDLFAQLCRERRYPYLRLDGSTSISKRQKLVNRFNDLSKDEFVFLLSSKAGGCGLNLI 62
           QTLDLFAQLCRERRYPYLRLDG+TSISKRQKLVNRFNDLSKDEF FLLSSKAGGCGLNLI
Sbjct: 562 QTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNRFNDLSKDEFAFLLSSKAGGCGLNLI 621

Query: 63  GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV 111
           GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRV+IYRFLSTGTIEEKV
Sbjct: 622 GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTIEEKV 669

[Close]

BLAST of MELO3C019511 vs. NCBI nr
Match: gi|1009150196|ref|XP_015892890.1| (PREDICTED: protein CHROMATIN REMODELING 25 [Ziziphus jujuba])

HSP 1 Score: 218.0 bits (554), Expect = 8.5e-54
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 1


Query: 3   QTLDLFAQLCRERRYPYLRLDGSTSISKRQKLVNRFNDLSKDEFVFLLSSKAGGCGLNLI 62
           QTLDLFAQLCRERRYPYLRLDG+TSISKRQKLVNRFND SKDEFVFLLSSKAGGCGLNLI
Sbjct: 580 QTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNRFNDPSKDEFVFLLSSKAGGCGLNLI 639

Query: 63  GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV 111
           GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV
Sbjct: 640 GGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSTGTIEEKV 687

The following BLAST results are available for this feature:

BLAST of MELO3C019511 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RAD54_ORYSJ	5.0e-54	91.67	DNA repair and recombination protein RAD54 OS=Oryza sativa subsp. japonica GN=RA...	[more]
CHR25_ARATH	7.2e-53	91.67	Protein CHROMATIN REMODELING 25 OS=Arabidopsis thaliana GN=CHR25 PE=1 SV=1	[more]
RAD54_CHICK	3.9e-43	75.93	DNA repair and recombination protein RAD54-like (Fragment) OS=Gallus gallus GN=R...	[more]
RAD54_HUMAN	3.3e-42	75.00	DNA repair and recombination protein RAD54-like OS=Homo sapiens GN=RAD54L PE=1 S...	[more]
RAD54_SCHPO	7.4e-42	73.83	DNA repair protein rhp54 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ...	[more]

BLAST of MELO3C019511 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9A1_CUCSA	9.1e-55	99.07	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G207350 PE=4 SV=1	[more]
A0A0B0MRC2_GOSAR	2.2e-53	96.30	DNA repair and recombination protein RAD54-like protein OS=Gossypium arboreum GN...	[more]
A0A0D2VAF4_GOSRA	2.2e-53	96.30	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G043100 PE=4 SV=1	[more]
A0A0D2W2R4_GOSRA	2.2e-53	96.30	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G043100 PE=4 SV=1	[more]
A0A061E0V1_THECC	2.9e-53	96.30	RAD54 isoform 3 OS=Theobroma cacao GN=TCM_007044 PE=4 SV=1	[more]

BLAST of MELO3C019511 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19210.1	4.0e-54	91.67	homolog of RAD54	[more]
AT2G18760.1	5.0e-28	51.85	chromatin remodeling 8	[more]
AT1G03750.1	4.4e-24	50.00	switch 2	[more]
AT2G13370.1	1.1e-22	44.55	chromatin remodeling 5	[more]
AT2G25170.1	4.1e-22	43.12	chromatin remodeling factor CHD3 (PICKLE)	[more]

BLAST of MELO3C019511 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112236\|ref\|XP_008456128.1\|	5.9e-55	100.00	PREDICTED: DNA repair and recombination protein RAD54 isoform X2 [Cucumis melo]	[more]
gi\|659112234\|ref\|XP_008456127.1\|	5.9e-55	100.00	PREDICTED: DNA repair and recombination protein RAD54 isoform X1 [Cucumis melo]	[more]
gi\|449445882\|ref\|XP_004140701.1\|	1.3e-54	99.07	PREDICTED: protein CHROMATIN REMODELING 25 [Cucumis sativus]	[more]
gi\|719969749\|ref\|XP_010269327.1\|	8.5e-54	97.22	PREDICTED: protein CHROMATIN REMODELING 25 [Nelumbo nucifera]	[more]
gi\|1009150196\|ref\|XP_015892890.1\|	8.5e-54	98.15	PREDICTED: protein CHROMATIN REMODELING 25 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001650	Helicase_C
IPR027417	P-loop_NTPase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045003	double-strand break repair via synthesis-dependent strand annealing
biological_process	GO:0051701	interaction with host
biological_process	GO:0007140	male meiosis
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0043687	post-translational protein modification
biological_process	GO:0007131	reciprocal meiotic recombination
biological_process	GO:0032204	regulation of telomere maintenance
biological_process	GO:0010212	response to ionizing radiation
biological_process	GO:0016444	somatic cell DNA recombination
biological_process	GO:0007129	synapsis
biological_process	GO:0043247	telomere maintenance in response to DNA damage
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019511T1	MELO3C019511T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 10..90 score: 1.1
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 6..90 score: 8.1
IPR001650	Helicase, C-terminal	PROFILE	PS51194	HELICASE_CTER	coord: 1..113 score: 14
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 3..108 score: 1.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 3..110 score: 7.6
None	No IPR available	PANTHER	PTHR10799	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED	coord: 3..110 score: 8.9

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019511	Cucumber (Chinese Long) v2	cumeB166
MELO3C019511	Cucumber (Chinese Long) v2	cumeB511
MELO3C019511	Watermelon (Charleston Gray)	mewcgB424
MELO3C019511	Watermelon (Charleston Gray)	mewcgB427
MELO3C019511	Watermelon (97103) v1	mewmB461
MELO3C019511	Watermelon (97103) v1	mewmB483
MELO3C019511	Cucurbita pepo (Zucchini)	cpemeB192
MELO3C019511	Cucurbita pepo (Zucchini)	cpemeB241
MELO3C019511	Cucurbita pepo (Zucchini)	cpemeB411
MELO3C019511	Cucurbita pepo (Zucchini)	cpemeB412
MELO3C019511	Bottle gourd (USVL1VR-Ls)	lsimeB267
MELO3C019511	Bottle gourd (USVL1VR-Ls)	lsimeB368
MELO3C019511	Cucumber (Gy14) v2	cgybmeB210
MELO3C019511	Cucumber (Gy14) v2	cgybmeB496
MELO3C019511	Silver-seed gourd	carmeB0215
MELO3C019511	Silver-seed gourd	carmeB0379
MELO3C019511	Silver-seed gourd	carmeB0380
MELO3C019511	Silver-seed gourd	carmeB0651
MELO3C019511	Cucumber (Chinese Long) v3	cucmeB247
MELO3C019511	Cucumber (Chinese Long) v3	cucmeB579
MELO3C019511	Watermelon (97103) v2	mewmbB432
MELO3C019511	Watermelon (97103) v2	mewmbB434
MELO3C019511	Wax gourd	mewgoB530
MELO3C019511	Melon (DHL92) v3.5.1	memeB090
MELO3C019511	Cucumber (Gy14) v1	cgymeB381
MELO3C019511	Cucumber (Gy14) v1	cgymeB417
MELO3C019511	Cucurbita maxima (Rimu)	cmameB140
MELO3C019511	Cucurbita maxima (Rimu)	cmameB298
MELO3C019511	Cucurbita maxima (Rimu)	cmameB481
MELO3C019511	Cucurbita maxima (Rimu)	cmameB691
MELO3C019511	Cucurbita moschata (Rifu)	cmomeB128
MELO3C019511	Cucurbita moschata (Rifu)	cmomeB290
MELO3C019511	Cucurbita moschata (Rifu)	cmomeB473
MELO3C019511	Cucurbita moschata (Rifu)	cmomeB683
MELO3C019511	Cucurbita moschata (Rifu)	cmomeB682
MELO3C019511	Wild cucumber (PI 183967)	cpimeB241
MELO3C019511	Wild cucumber (PI 183967)	cpimeB567