MELO3C019484 (gene) Melon (DHL92) v3.5.1

NameMELO3C019484
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA polymerase subunit gamma-1, mitochondrial
Locationchr6 : 10421991 .. 10423740 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTTCACCACCGAAAACAGCCACAACCACGAAGGGTAAACGCTACAAGGGTATTCCAACGAGACATCCTTTTAAGAAAATCCACCGGTTAGTGGTAGCAATTGATGCCGATCAGCACAGTCTGTATACAGGTCGTTTCTCTAACCCCATGTCTCCTGTTACTATAAAAAGGGAGGTTCCTTCTAGGGTGTCAGTTGAGACAGTGGTATTAAATTCTGATTCCTTTGATGGTACTAACAATATTGTTCTGTCTACACTCTTTCGTCGAAAGACTGGACATCGAACTGATCCGTCCTCTACTCCTCTCATCCGACTCAGGTTTTGCACTCTCCATCTCGATCTGCTTCACCTCCTAAGGATGTTTCCTCTCGACCTATGGACCATGGTAAGTCTTCTACTGCTTCCTCGTTTCTAGCTTATCCACAAACCTCTCTCCCAACTGATGATGATGGCGCGAGTGATGACACTAACGAGATTATGTTCCTGTACCGGAGGACCCTCTTGCACTAGAGGAAACCACGACTTCTACTAAGGATCCTGTGTCCTCTCCTGATAATCGAACATCCGAAACTCAGTCGACTGAAGGACATGGTGATTCCTCTATTTTGATGTCACCTCCCGAGCATGTTGGTTCCTCCTATAGACCCCGTCGTCCACCTGTCAAGGGCCAATGCGTAATTTCAACCAAGGCTGATCGTCGGAAGATACCTCCCAATGTATCCTCTGTGTCGATAGATGGTGTGTCGTTTCATTTTGAGGAAGGACCACACAAATGGAAATAGGTTGTTAAATGACGCGTTGCAGATGAAACAAATCTTTCTTATCAGTTTAATTCCTACCCTGCCTTTCTTGACTTAATTTGCACTATTGGTCTACTTCGTACTATATCTGAGGTTGGTCCCTTCTATCTTCGACTTATCCAAGAACTAGTTGTTAATCTGCCTTCTGATTTTAATGATTTGAGTGCTGAGGAGTTCTACAAGGTGCATATCTGAGGCGTATGTTTTAATGTTTCTCCTGAATTACTTAATCAATTCCTAGGCATTTCACTATCGACTGACAATGCTGTTTCATACCCCACTCCTCAGCGCCTGACTGAAGAACTTGCTCAGGGAACAATACCTGTCTGACCAGTTGATGGACAACTTCCTGTTGCATCTTTAACATTCAACTATGCGATTCTCCATCAGATTGGTATCTCCAATTGGATTCCCTCTACTTATGCATCTACAATCGCTACTTCTCTAGATCACTTTGTCTATCTTATGGGCACCAGAGTCAAGGTGAATGTTGGAGAATTTATTTTTAATCACTTACTGTGACATGTTGATACGTTTGCAATCCATATACCCATATGCTTTCTAAGACTTCTAAGTGACTTTCTGTTATCCCAACAATCGGCTATTCTGACTCCGCTTGATGTTACTGGCACAGCTTTGCGCATTATTTCGTTGAGTATGCGTTTGTTTCAAGGCTCCCATATTCCAGATGTTGCTGCTGAATTTGACAATGCACCTGGACGGATTAAGTCTGCTGCTGCCATGCACTCTACTGTTGGTCAGTCGCTGGTCCTCTTTATCTTGTTAGCCAATCTCCTGTTACAAGCATTGATGGCAGAATCTCGTTCCCTCACTCGCCATATTAGTGAGCTCTTTGATAGGCGCACTATGTTGGATGCTATTTTATGCGACCTTCGACGTGTAGCTTTCGGACCTTCACCTTCTCCGCCAAAACATCAGGACTGA

mRNA sequence

ATGGCTTCTTCACCACCGAAAACAGCCACAACCACGAAGGGTAAACGCTACAAGGGTATTCCAACGAGACATCCTTTTAAGAAAATCCACCGGTTAGTGGTAGCAATTGATGCCGATCAGCACAGTCTGTATACAGGTCGTTTCTCTAACCCCATGTCTCCTGTTACTATAAAAAGGGAGGTTCCTTCTAGGGTGTCAGTTGAGACAGTGGTATTAAATTCTGATTCCTTTGATGGTACTAACAATATTGTTCTGTCTACACTCTTTCGTCGAAAGACTGGACATCGAACTGATCCGTCCTCTACTCCTCTCATCCGACTCAGGTTTTGCACTCTCCATCTCGATCTGCTTCACCTCCTAAGGATGTTTCCTCTCGACCTATGGACCATGGACCCTCTTGCACTAGAGGAAACCACGACTTCTACTAAGGATCCTGTGTCCTCTCCTGATAATCGAACATCCGAAACTCAGTCGACTGAAGGACATGGTGATTCCTCTATTTTGATGTCACCTCCCGAGCATGTTGGTTCCTCCTATAGACCCCGTCGTCCACCTGTCAAGGGCCAATGCGTAATTTCAACCAAGGCTGATCGTCGGAAGATACCTCCCAATGTATCCTCTGTGTCGATAGATGCTTTGCGCATTATTTCGTTGAGTATGCGTTTGTTTCAAGGCTCCCATATTCCAGATGTTGCTGCTGAATTTGACAATGCACCTGGACGGATTAAGTCTGCTGCTGCCATGCACTCTACTGTTGGTCAGTCGCTGGTCCTCTTTATCTTGTTAGCCAATCTCCTGTTACAAGCATTGATGGCAGAATCTCGTTCCCTCACTCGCCATATTAGTGAGCTCTTTGATAGGCGCACTATGTTGGATGCTATTTTATGCGACCTTCGACGTGTAGCTTTCGGACCTTCACCTTCTCCGCCAAAACATCAGGACTGA

Coding sequence (CDS)

ATGGCTTCTTCACCACCGAAAACAGCCACAACCACGAAGGGTAAACGCTACAAGGGTATTCCAACGAGACATCCTTTTAAGAAAATCCACCGGTTAGTGGTAGCAATTGATGCCGATCAGCACAGTCTGTATACAGGTCGTTTCTCTAACCCCATGTCTCCTGTTACTATAAAAAGGGAGGTTCCTTCTAGGGTGTCAGTTGAGACAGTGGTATTAAATTCTGATTCCTTTGATGGTACTAACAATATTGTTCTGTCTACACTCTTTCGTCGAAAGACTGGACATCGAACTGATCCGTCCTCTACTCCTCTCATCCGACTCAGGTTTTGCACTCTCCATCTCGATCTGCTTCACCTCCTAAGGATGTTTCCTCTCGACCTATGGACCATGGACCCTCTTGCACTAGAGGAAACCACGACTTCTACTAAGGATCCTGTGTCCTCTCCTGATAATCGAACATCCGAAACTCAGTCGACTGAAGGACATGGTGATTCCTCTATTTTGATGTCACCTCCCGAGCATGTTGGTTCCTCCTATAGACCCCGTCGTCCACCTGTCAAGGGCCAATGCGTAATTTCAACCAAGGCTGATCGTCGGAAGATACCTCCCAATGTATCCTCTGTGTCGATAGATGCTTTGCGCATTATTTCGTTGAGTATGCGTTTGTTTCAAGGCTCCCATATTCCAGATGTTGCTGCTGAATTTGACAATGCACCTGGACGGATTAAGTCTGCTGCTGCCATGCACTCTACTGTTGGTCAGTCGCTGGTCCTCTTTATCTTGTTAGCCAATCTCCTGTTACAAGCATTGATGGCAGAATCTCGTTCCCTCACTCGCCATATTAGTGAGCTCTTTGATAGGCGCACTATGTTGGATGCTATTTTATGCGACCTTCGACGTGTAGCTTTCGGACCTTCACCTTCTCCGCCAAAACATCAGGACTGA

Protein sequence

MASSPPKTATTTKGKRYKGIPTRHPFKKIHRLVVAIDADQHSLYTGRFSNPMSPVTIKREVPSRVSVETVVLNSDSFDGTNNIVLSTLFRRKTGHRTDPSSTPLIRLRFCTLHLDLLHLLRMFPLDLWTMDPLALEETTTSTKDPVSSPDNRTSETQSTEGHGDSSILMSPPEHVGSSYRPRRPPVKGQCVISTKADRRKIPPNVSSVSIDALRIISLSMRLFQGSHIPDVAAEFDNAPGRIKSAAAMHSTVGQSLVLFILLANLLLQALMAESRSLTRHISELFDRRTMLDAILCDLRRVAFGPSPSPPKHQD*
BLAST of MELO3C019484 vs. NCBI nr
Match: gi|659082052|ref|XP_008441642.1| (PREDICTED: uncharacterized protein LOC103485722 [Cucumis melo])

HSP 1 Score: 181.8 bits (460), Expect = 1.9e-42
Identity = 117/253 (46.25%), Postives = 145/253 (57.31%), Query Frame = 1

Query: 1   MASSPPKTATTTKGKRYKGIPTRHPFKKIHRLVVAIDADQHSL--------YTGRFSNPM 60
           MA SPPKT T++KGKRYKGIPT+HP+KKIHR V   +  QH          + G  SNP 
Sbjct: 162 MALSPPKTVTSSKGKRYKGIPTKHPYKKIHRSVPPTEEGQHCQVPIPVHCSHAGCSSNPG 221

Query: 61  SPVTIKREVPS------------------RVSVETVVLNSDSFDGTNNIVLSTLFRRKTG 120
           S +T+K+EVP                   RVS+ETVVL+SDS D  +N+VLSTL  RK+ 
Sbjct: 222 SLITVKKEVPEFSPPRTSHLSTSSSVPEPRVSIETVVLDSDSSDSKDNVVLSTLLHRKSS 281

Query: 121 HRTDPSSTPLIRLRFCTLHLDLLHLLRMFPLDLWTMDPLALEETTTSTKDPVSSPDNRTS 180
               PSS           + D             T +   LE+++TST+DP +S D RT 
Sbjct: 282 --AAPSSPHAFPQASLPTNEDDASDETDEDYVPGTEETTVLEDSSTSTEDPSASHDARTL 341

Query: 181 ETQSTEGHGDSSILMSPPEHVGSSYRPRRPPVKGQCVISTKADRRKIPPNVSSVSIDALR 228
           E +STEG  + SI MSPP +V SSY  RRPPV+GQ V STKA RRKIPPNV SV ID   
Sbjct: 342 EPRSTEGSSEFSIPMSPPGNVDSSYSLRRPPVRGQRVFSTKAGRRKIPPNVPSVPID--- 401

BLAST of MELO3C019484 vs. NCBI nr
Match: gi|659128057|ref|XP_008464024.1| (PREDICTED: uncharacterized protein LOC103502008 [Cucumis melo])

HSP 1 Score: 148.7 bits (374), Expect = 1.7e-32
Identity = 101/205 (49.27%), Postives = 115/205 (56.10%), Query Frame = 1

Query: 11  TTKGKRYKGIPTRHPFKKIHRLVVAIDADQHSLYTGRFSNPMSPVTIKREVPSRVSVETV 70
           TTKGK YKGI TRHPFKKI R V A DA QHSL                  P RVSVETV
Sbjct: 3   TTKGKCYKGIRTRHPFKKIRRSVAATDATQHSLLKN---------------PVRVSVETV 62

Query: 71  VLNSDSFDGTNNIVLSTLFRRKTGHRTDPSSTPLIRLRFCTLHLDLLHLLRMFPLDLW-- 130
           VL+ DS DG +N V S    R T H    ++         +L  D          D    
Sbjct: 63  VLDFDSSDGIDNDVPS----RTTDHGKSSATPSFPASPQVSLPTDDDEASDDIDEDYVPV 122

Query: 131 TMDPLALEETTTSTKDPVSSPDNRTSETQSTEGHGDSSILMSPPEHVGSSYRPRRPPVKG 190
           T +  ALEET TST+D VSSPDNRT E QST+  G+SSI MSP  HVGSS RP R  V+G
Sbjct: 123 TKETHALEETMTSTEDLVSSPDNRTPEPQSTKAPGESSISMSPLVHVGSSSRPHRQLVRG 182

Query: 191 QCVISTKADRRKIPPNVSSVSIDAL 214
           Q V+STK   RKIP N+  +SID +
Sbjct: 183 QRVVSTKTGNRKIPSNIPFMSIDGV 188

BLAST of MELO3C019484 vs. NCBI nr
Match: gi|659128057|ref|XP_008464024.1| (PREDICTED: uncharacterized protein LOC103502008 [Cucumis melo])

HSP 1 Score: 73.6 bits (179), Expect = 7.1e-10
Identity = 40/56 (71.43%), Postives = 44/56 (78.57%), Query Frame = 1

Query: 212 ALRIISLSMRLFQGSHIPDVAAEFDNAPGRIKSAAAMHSTVGQSLVLFILLANLLL 268
           A R I LSMRLFQGSHIP+VA EF+NAP    +AAAMHSTVGQ LVL + LAN LL
Sbjct: 364 APRNIPLSMRLFQGSHIPNVAVEFENAPRGTGAAAAMHSTVGQPLVLSVPLANRLL 419


HSP 2 Score: 117.5 bits (293), Expect = 4.3e-23
Identity = 84/219 (38.36%), Postives = 117/219 (53.42%), Query Frame = 1

Query: 7   KTATTTKGKRYKGIPTRHPFKKIHRLVVAIDADQHSLYTGRFSNPMSPVTIKREVPSRVS 66
           K+ T++KGKRYKGIPT+HP+KK+ + +                 P  P +  R  P RVS
Sbjct: 34  KSITSSKGKRYKGIPTKHPYKKVCKSI-----------------PSVPKSSSRPEP-RVS 93

Query: 67  VETVVLNSDSFDGTNNIVLSTLFRRKTGHRTDPSSTPLIRLRFCTLHLDLLHLLRMFPLD 126
           VETVVL+SDS +  +N++LSTL   +  H +  ++ P      C    D           
Sbjct: 94  VETVVLDSDSSESDDNVILSTLVTEQEAHASPKTAPP------CEADDDDDDSDDE-DYA 153

Query: 127 LWTMDPLALEETTTSTKDPVSSP-----DNRTSET-------QSTEGHGDSSILMSPPEH 186
             T +    E T+TST++  +SP     D+R++E        +STEG  +SS  +S   H
Sbjct: 154 PGTKEKTEAEATSTSTENQSASPEKDPYDHRSTEEPGESSIPRSTEGPSESSTPVSTLAH 213

Query: 187 VGSSYRPRRPPVKGQCVISTKADRRKIPPNVSSVSIDAL 214
           V SS   RRPP KGQ V+STK  R+K+PPNV SV ID +
Sbjct: 214 VASSSGFRRPPTKGQRVVSTKTGRQKVPPNVPSVPIDGV 227

BLAST of MELO3C019484 vs. NCBI nr
Match: gi|659082066|ref|XP_008441650.1| (PREDICTED: uncharacterized protein LOC103485731 [Cucumis melo])

HSP 1 Score: 116.7 bits (291), Expect = 7.3e-23
Identity = 62/98 (63.27%), Postives = 73/98 (74.49%), Query Frame = 1

Query: 212 ALRIISLSMRLFQGSHIPDVAAEFDNAPGRIKSAAAMHSTVGQSLVLFILLANLLLQALM 271
           A R+I LSMRLFQG+H PDVAAEFDNAPG   + AA    VG  + L + LAN LLQAL+
Sbjct: 418 APRVIPLSMRLFQGAHFPDVAAEFDNAPGGTSTPAASQPAVGHPVTLCVSLANRLLQALI 477

Query: 272 AESRSLTRHISELFDRRTMLDAILCDLRRVAFGPSPSP 310
           A+SR+LT  ISEL DRRT+LDAI+ DLRR A G +P P
Sbjct: 478 AKSRALTCQISELTDRRTVLDAIIRDLRRTASGTTPPP 515


HSP 2 Score: 114.4 bits (285), Expect = 3.6e-22
Identity = 59/101 (58.42%), Postives = 75/101 (74.26%), Query Frame = 1

Query: 212 ALRIISLSMRLFQGSHIPDVAAEFDNAPGRIKSAAAMHSTVGQSLVLFILLANLLLQALM 271
           A R+I L+MRLFQG+HIP+VA+EFDNA  +  + AA    VG +L L + LAN LLQAL+
Sbjct: 173 APRVIPLNMRLFQGAHIPNVASEFDNAASKTSTPAASQPAVGHALTLSVSLANRLLQALI 232

Query: 272 AESRSLTRHISELFDRRTMLDAILCDLRRVAFGPSPSPPKH 313
            ESR+LT  ISEL DRRT+LDA++ DL+R  FG +P PP H
Sbjct: 233 VESRALTHRISELSDRRTVLDAVIRDLQRATFGATP-PPSH 272

BLAST of MELO3C019484 vs. NCBI nr
Match: gi|659114605|ref|XP_008457140.1| (PREDICTED: uncharacterized protein LOC103496886 [Cucumis melo])

HSP 1 Score: 108.6 bits (270), Expect = 2.0e-20
Identity = 56/95 (58.95%), Postives = 67/95 (70.53%), Query Frame = 1

Query: 215 IISLSMRLFQGSHIPDVAAEFDNAPGRIKSAAAMHSTVGQSLVLFILLANLLLQALMAES 274
           +I LSMRLFQG+H  DVA EFDN PG   + A     VG  + L + LAN L QAL+AES
Sbjct: 470 VIPLSMRLFQGAHFLDVAVEFDNTPGETSTPAVSQPAVGHPVTLSVSLANRLPQALIAES 529

Query: 275 RSLTRHISELFDRRTMLDAILCDLRRVAFGPSPSP 310
           R+LTR ISEL DRRT+LD ++ DLRRVA G +P P
Sbjct: 530 RALTRQISELTDRRTVLDPVISDLRRVASGTTPPP 564

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|659082052|ref|XP_008441642.1|1.9e-4246.25PREDICTED: uncharacterized protein LOC103485722 [Cucumis melo][more]
gi|659128057|ref|XP_008464024.1|1.7e-3249.27PREDICTED: uncharacterized protein LOC103502008 [Cucumis melo][more]
gi|659128057|ref|XP_008464024.1|7.1e-1071.43PREDICTED: uncharacterized protein LOC103502008 [Cucumis melo][more]
gi|659082066|ref|XP_008441650.1|7.3e-2363.27PREDICTED: uncharacterized protein LOC103485731 [Cucumis melo][more]
gi|659114605|ref|XP_008457140.1|2.0e-2058.95PREDICTED: uncharacterized protein LOC103496886 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019484T1MELO3C019484T1mRNA